Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0030155: regulation of cell adhesion0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
6GO:0009715: chalcone biosynthetic process0.00E+00
7GO:1902326: positive regulation of chlorophyll biosynthetic process0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
13GO:0018023: peptidyl-lysine trimethylation0.00E+00
14GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
15GO:0015979: photosynthesis2.02E-09
16GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.78E-07
17GO:0009773: photosynthetic electron transport in photosystem I2.33E-06
18GO:0010190: cytochrome b6f complex assembly4.66E-06
19GO:1901259: chloroplast rRNA processing8.00E-06
20GO:0071482: cellular response to light stimulus2.69E-05
21GO:0032544: plastid translation2.69E-05
22GO:2001141: regulation of RNA biosynthetic process6.06E-05
23GO:0010114: response to red light6.56E-05
24GO:0009765: photosynthesis, light harvesting1.06E-04
25GO:0009767: photosynthetic electron transport chain1.19E-04
26GO:0010027: thylakoid membrane organization1.48E-04
27GO:0006810: transport1.67E-04
28GO:0018298: protein-chromophore linkage2.35E-04
29GO:0034337: RNA folding4.26E-04
30GO:0000476: maturation of 4.5S rRNA4.26E-04
31GO:0009443: pyridoxal 5'-phosphate salvage4.26E-04
32GO:0000967: rRNA 5'-end processing4.26E-04
33GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.26E-04
34GO:0051775: response to redox state4.26E-04
35GO:0000481: maturation of 5S rRNA4.26E-04
36GO:0006659: phosphatidylserine biosynthetic process4.26E-04
37GO:0042371: vitamin K biosynthetic process4.26E-04
38GO:0071461: cellular response to redox state4.26E-04
39GO:0009657: plastid organization6.20E-04
40GO:0034470: ncRNA processing9.21E-04
41GO:0009629: response to gravity9.21E-04
42GO:0080005: photosystem stoichiometry adjustment9.21E-04
43GO:0018026: peptidyl-lysine monomethylation9.21E-04
44GO:0034755: iron ion transmembrane transport9.21E-04
45GO:0071457: cellular response to ozone9.21E-04
46GO:1904143: positive regulation of carotenoid biosynthetic process9.21E-04
47GO:0055114: oxidation-reduction process9.89E-04
48GO:0006949: syncytium formation1.02E-03
49GO:0019684: photosynthesis, light reaction1.17E-03
50GO:0043085: positive regulation of catalytic activity1.17E-03
51GO:0006352: DNA-templated transcription, initiation1.17E-03
52GO:0016024: CDP-diacylglycerol biosynthetic process1.34E-03
53GO:0015995: chlorophyll biosynthetic process1.47E-03
54GO:0005977: glycogen metabolic process1.50E-03
55GO:0048281: inflorescence morphogenesis1.50E-03
56GO:0006954: inflammatory response1.50E-03
57GO:0090391: granum assembly1.50E-03
58GO:0010207: photosystem II assembly1.72E-03
59GO:0006166: purine ribonucleoside salvage2.17E-03
60GO:0071484: cellular response to light intensity2.17E-03
61GO:0051085: chaperone mediated protein folding requiring cofactor2.17E-03
62GO:0009152: purine ribonucleotide biosynthetic process2.17E-03
63GO:0046653: tetrahydrofolate metabolic process2.17E-03
64GO:0006107: oxaloacetate metabolic process2.17E-03
65GO:0009052: pentose-phosphate shunt, non-oxidative branch2.17E-03
66GO:0010731: protein glutathionylation2.17E-03
67GO:0010148: transpiration2.17E-03
68GO:0006168: adenine salvage2.17E-03
69GO:0016556: mRNA modification2.17E-03
70GO:0006986: response to unfolded protein2.17E-03
71GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.17E-03
72GO:0009768: photosynthesis, light harvesting in photosystem I2.63E-03
73GO:0071486: cellular response to high light intensity2.91E-03
74GO:0019464: glycine decarboxylation via glycine cleavage system2.91E-03
75GO:0010107: potassium ion import2.91E-03
76GO:0006109: regulation of carbohydrate metabolic process2.91E-03
77GO:0015994: chlorophyll metabolic process2.91E-03
78GO:0006546: glycine catabolic process2.91E-03
79GO:0006021: inositol biosynthetic process2.91E-03
80GO:0006734: NADH metabolic process2.91E-03
81GO:0010021: amylopectin biosynthetic process2.91E-03
82GO:0009107: lipoate biosynthetic process3.73E-03
83GO:0044209: AMP salvage3.73E-03
84GO:0006465: signal peptide processing3.73E-03
85GO:0071493: cellular response to UV-B3.73E-03
86GO:0098719: sodium ion import across plasma membrane3.73E-03
87GO:0006564: L-serine biosynthetic process3.73E-03
88GO:0010236: plastoquinone biosynthetic process3.73E-03
89GO:0009306: protein secretion3.75E-03
90GO:0009664: plant-type cell wall organization4.19E-03
91GO:0006751: glutathione catabolic process4.61E-03
92GO:0042549: photosystem II stabilization4.61E-03
93GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.61E-03
94GO:0006655: phosphatidylglycerol biosynthetic process4.61E-03
95GO:0032973: amino acid export4.61E-03
96GO:0000741: karyogamy4.61E-03
97GO:0009228: thiamine biosynthetic process4.61E-03
98GO:0050665: hydrogen peroxide biosynthetic process4.61E-03
99GO:0009791: post-embryonic development5.47E-03
100GO:0019252: starch biosynthetic process5.47E-03
101GO:0009955: adaxial/abaxial pattern specification5.57E-03
102GO:0010189: vitamin E biosynthetic process5.57E-03
103GO:0009854: oxidative photosynthetic carbon pathway5.57E-03
104GO:0010019: chloroplast-nucleus signaling pathway5.57E-03
105GO:0032502: developmental process6.26E-03
106GO:0009772: photosynthetic electron transport in photosystem II6.58E-03
107GO:0043090: amino acid import6.58E-03
108GO:0070370: cellular heat acclimation6.58E-03
109GO:0009645: response to low light intensity stimulus6.58E-03
110GO:0009769: photosynthesis, light harvesting in photosystem II6.58E-03
111GO:0010103: stomatal complex morphogenesis6.58E-03
112GO:0009828: plant-type cell wall loosening7.11E-03
113GO:0052543: callose deposition in cell wall7.65E-03
114GO:0007155: cell adhesion7.65E-03
115GO:0048564: photosystem I assembly7.65E-03
116GO:0009690: cytokinin metabolic process7.65E-03
117GO:0006605: protein targeting7.65E-03
118GO:0010078: maintenance of root meristem identity7.65E-03
119GO:0032508: DNA duplex unwinding7.65E-03
120GO:0031540: regulation of anthocyanin biosynthetic process7.65E-03
121GO:0055075: potassium ion homeostasis7.65E-03
122GO:0017004: cytochrome complex assembly8.79E-03
123GO:0019430: removal of superoxide radicals8.79E-03
124GO:0001558: regulation of cell growth8.79E-03
125GO:0010204: defense response signaling pathway, resistance gene-independent8.79E-03
126GO:0043562: cellular response to nitrogen levels8.79E-03
127GO:0009627: systemic acquired resistance9.49E-03
128GO:0009409: response to cold9.73E-03
129GO:0009821: alkaloid biosynthetic process9.98E-03
130GO:0080144: amino acid homeostasis9.98E-03
131GO:0090333: regulation of stomatal closure9.98E-03
132GO:0046916: cellular transition metal ion homeostasis9.98E-03
133GO:0051453: regulation of intracellular pH1.12E-02
134GO:0005982: starch metabolic process1.12E-02
135GO:0006779: porphyrin-containing compound biosynthetic process1.12E-02
136GO:0009813: flavonoid biosynthetic process1.17E-02
137GO:0010218: response to far red light1.23E-02
138GO:0006782: protoporphyrinogen IX biosynthetic process1.25E-02
139GO:0009684: indoleacetic acid biosynthetic process1.39E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.39E-02
141GO:0006879: cellular iron ion homeostasis1.39E-02
142GO:0006415: translational termination1.39E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.39E-02
144GO:0009637: response to blue light1.41E-02
145GO:0009853: photorespiration1.41E-02
146GO:0030001: metal ion transport1.61E-02
147GO:0010588: cotyledon vascular tissue pattern formation1.67E-02
148GO:0006108: malate metabolic process1.67E-02
149GO:0048467: gynoecium development1.82E-02
150GO:0010143: cutin biosynthetic process1.82E-02
151GO:0019853: L-ascorbic acid biosynthetic process1.98E-02
152GO:0009944: polarity specification of adaxial/abaxial axis2.30E-02
153GO:0051302: regulation of cell division2.47E-02
154GO:0006418: tRNA aminoacylation for protein translation2.47E-02
155GO:0007017: microtubule-based process2.47E-02
156GO:0009658: chloroplast organization2.51E-02
157GO:0051603: proteolysis involved in cellular protein catabolic process2.55E-02
158GO:0019915: lipid storage2.64E-02
159GO:0061077: chaperone-mediated protein folding2.64E-02
160GO:0009269: response to desiccation2.64E-02
161GO:0019748: secondary metabolic process2.82E-02
162GO:0030245: cellulose catabolic process2.82E-02
163GO:0016226: iron-sulfur cluster assembly2.82E-02
164GO:0006730: one-carbon metabolic process2.82E-02
165GO:0043086: negative regulation of catalytic activity2.91E-02
166GO:0006012: galactose metabolic process3.00E-02
167GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.00E-02
168GO:0009686: gibberellin biosynthetic process3.00E-02
169GO:0001944: vasculature development3.00E-02
170GO:0048367: shoot system development3.01E-02
171GO:0005975: carbohydrate metabolic process3.18E-02
172GO:0009561: megagametogenesis3.18E-02
173GO:0009735: response to cytokinin3.23E-02
174GO:0080167: response to karrikin3.29E-02
175GO:0016117: carotenoid biosynthetic process3.37E-02
176GO:0080022: primary root development3.56E-02
177GO:0010087: phloem or xylem histogenesis3.56E-02
178GO:0009742: brassinosteroid mediated signaling pathway3.71E-02
179GO:0009741: response to brassinosteroid3.75E-02
180GO:0010268: brassinosteroid homeostasis3.75E-02
181GO:0009958: positive gravitropism3.75E-02
182GO:0006885: regulation of pH3.75E-02
183GO:0071472: cellular response to salt stress3.75E-02
184GO:0006662: glycerol ether metabolic process3.75E-02
185GO:0010197: polar nucleus fusion3.75E-02
186GO:0006814: sodium ion transport3.95E-02
187GO:0009646: response to absence of light3.95E-02
188GO:0015986: ATP synthesis coupled proton transport3.95E-02
189GO:0009851: auxin biosynthetic process4.15E-02
190GO:0048825: cotyledon development4.15E-02
191GO:0008654: phospholipid biosynthetic process4.15E-02
192GO:0016132: brassinosteroid biosynthetic process4.36E-02
193GO:0071554: cell wall organization or biogenesis4.36E-02
194GO:0006869: lipid transport4.59E-02
195GO:0009058: biosynthetic process4.61E-02
196GO:1901657: glycosyl compound metabolic process4.78E-02
197GO:0016125: sterol metabolic process4.99E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0016210: naringenin-chalcone synthase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.09E-06
11GO:0019899: enzyme binding1.27E-05
12GO:0019843: rRNA binding5.84E-05
13GO:0048038: quinone binding7.54E-05
14GO:0001053: plastid sigma factor activity1.06E-04
15GO:0016987: sigma factor activity1.06E-04
16GO:0043495: protein anchor1.06E-04
17GO:0016168: chlorophyll binding1.64E-04
18GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.15E-04
19GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.26E-04
20GO:0046906: tetrapyrrole binding4.26E-04
21GO:0051777: ent-kaurenoate oxidase activity4.26E-04
22GO:0004856: xylulokinase activity4.26E-04
23GO:0009374: biotin binding4.26E-04
24GO:0005080: protein kinase C binding4.26E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.26E-04
26GO:0008746: NAD(P)+ transhydrogenase activity4.26E-04
27GO:0004328: formamidase activity4.26E-04
28GO:0005509: calcium ion binding4.54E-04
29GO:0004033: aldo-keto reductase (NADP) activity5.08E-04
30GO:0047746: chlorophyllase activity9.21E-04
31GO:0003839: gamma-glutamylcyclotransferase activity9.21E-04
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.21E-04
33GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.21E-04
34GO:0004617: phosphoglycerate dehydrogenase activity9.21E-04
35GO:0004047: aminomethyltransferase activity9.21E-04
36GO:0033201: alpha-1,4-glucan synthase activity9.21E-04
37GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.21E-04
38GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.21E-04
39GO:0019156: isoamylase activity9.21E-04
40GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.21E-04
41GO:0004512: inositol-3-phosphate synthase activity9.21E-04
42GO:0008864: formyltetrahydrofolate deformylase activity1.50E-03
43GO:0004373: glycogen (starch) synthase activity1.50E-03
44GO:0016992: lipoate synthase activity1.50E-03
45GO:0002161: aminoacyl-tRNA editing activity1.50E-03
46GO:0004751: ribose-5-phosphate isomerase activity1.50E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.50E-03
48GO:0070402: NADPH binding1.50E-03
49GO:0031072: heat shock protein binding1.52E-03
50GO:0031409: pigment binding2.14E-03
51GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.17E-03
52GO:0001872: (1->3)-beta-D-glucan binding2.17E-03
53GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.17E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity2.17E-03
55GO:0003999: adenine phosphoribosyltransferase activity2.17E-03
56GO:0016149: translation release factor activity, codon specific2.17E-03
57GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.17E-03
58GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.17E-03
59GO:0016851: magnesium chelatase activity2.17E-03
60GO:0005528: FK506 binding2.38E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity2.91E-03
62GO:0045430: chalcone isomerase activity2.91E-03
63GO:0009011: starch synthase activity2.91E-03
64GO:0019199: transmembrane receptor protein kinase activity2.91E-03
65GO:0042277: peptide binding2.91E-03
66GO:0008891: glycolate oxidase activity2.91E-03
67GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.91E-03
68GO:0016279: protein-lysine N-methyltransferase activity2.91E-03
69GO:0004185: serine-type carboxypeptidase activity3.13E-03
70GO:0016491: oxidoreductase activity3.30E-03
71GO:0022891: substrate-specific transmembrane transporter activity3.45E-03
72GO:0003989: acetyl-CoA carboxylase activity3.73E-03
73GO:0016846: carbon-sulfur lyase activity3.73E-03
74GO:0016773: phosphotransferase activity, alcohol group as acceptor3.73E-03
75GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.82E-03
76GO:0004556: alpha-amylase activity4.61E-03
77GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.61E-03
78GO:0004784: superoxide dismutase activity4.61E-03
79GO:0015081: sodium ion transmembrane transporter activity4.61E-03
80GO:0016615: malate dehydrogenase activity4.61E-03
81GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.61E-03
82GO:0030060: L-malate dehydrogenase activity5.57E-03
83GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.57E-03
84GO:0016788: hydrolase activity, acting on ester bonds6.49E-03
85GO:0051082: unfolded protein binding7.20E-03
86GO:0008135: translation factor activity, RNA binding8.79E-03
87GO:0046914: transition metal ion binding8.79E-03
88GO:0003747: translation release factor activity9.98E-03
89GO:0016844: strictosidine synthase activity1.12E-02
90GO:0005381: iron ion transmembrane transporter activity1.12E-02
91GO:0008047: enzyme activator activity1.25E-02
92GO:0047372: acylglycerol lipase activity1.39E-02
93GO:0015386: potassium:proton antiporter activity1.39E-02
94GO:0003746: translation elongation factor activity1.41E-02
95GO:0008378: galactosyltransferase activity1.53E-02
96GO:0000049: tRNA binding1.53E-02
97GO:0003725: double-stranded RNA binding1.67E-02
98GO:0004022: alcohol dehydrogenase (NAD) activity1.67E-02
99GO:0009055: electron carrier activity1.75E-02
100GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.82E-02
101GO:0008266: poly(U) RNA binding1.82E-02
102GO:0051537: 2 iron, 2 sulfur cluster binding1.97E-02
103GO:0003735: structural constituent of ribosome2.18E-02
104GO:0051536: iron-sulfur cluster binding2.30E-02
105GO:0004857: enzyme inhibitor activity2.30E-02
106GO:0008168: methyltransferase activity2.40E-02
107GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.46E-02
108GO:0051087: chaperone binding2.47E-02
109GO:0030570: pectate lyase activity3.00E-02
110GO:0008810: cellulase activity3.00E-02
111GO:0003727: single-stranded RNA binding3.18E-02
112GO:0004812: aminoacyl-tRNA ligase activity3.37E-02
113GO:0047134: protein-disulfide reductase activity3.37E-02
114GO:0016746: transferase activity, transferring acyl groups3.61E-02
115GO:0052689: carboxylic ester hydrolase activity3.72E-02
116GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.75E-02
117GO:0004791: thioredoxin-disulfide reductase activity3.95E-02
118GO:0010181: FMN binding3.95E-02
119GO:0003824: catalytic activity4.57E-02
120GO:0003723: RNA binding4.60E-02
121GO:0015385: sodium:proton antiporter activity4.78E-02
122GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.78E-02
123GO:0016791: phosphatase activity4.99E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009507: chloroplast1.76E-48
3GO:0009535: chloroplast thylakoid membrane1.84E-31
4GO:0009570: chloroplast stroma3.19E-19
5GO:0009579: thylakoid6.00E-19
6GO:0009543: chloroplast thylakoid lumen3.93E-18
7GO:0009941: chloroplast envelope8.29E-15
8GO:0009654: photosystem II oxygen evolving complex2.09E-12
9GO:0019898: extrinsic component of membrane6.61E-11
10GO:0009534: chloroplast thylakoid6.69E-11
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.24E-11
12GO:0031977: thylakoid lumen3.10E-10
13GO:0030095: chloroplast photosystem II5.75E-06
14GO:0009523: photosystem II6.61E-05
15GO:0042651: thylakoid membrane2.63E-04
16GO:0009547: plastid ribosome4.26E-04
17GO:0005787: signal peptidase complex4.26E-04
18GO:0009522: photosystem I6.32E-04
19GO:0005840: ribosome6.39E-04
20GO:0010319: stromule1.03E-03
21GO:0033281: TAT protein transport complex1.50E-03
22GO:0010007: magnesium chelatase complex1.50E-03
23GO:0009317: acetyl-CoA carboxylase complex1.50E-03
24GO:0010287: plastoglobule1.82E-03
25GO:0030076: light-harvesting complex1.92E-03
26GO:0042646: plastid nucleoid2.17E-03
27GO:0005960: glycine cleavage complex2.17E-03
28GO:0048046: apoplast2.71E-03
29GO:0009517: PSII associated light-harvesting complex II2.91E-03
30GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.61E-03
31GO:0009295: nucleoid7.55E-03
32GO:0009501: amyloplast7.65E-03
33GO:0009536: plastid7.87E-03
34GO:0031969: chloroplast membrane8.75E-03
35GO:0005763: mitochondrial small ribosomal subunit9.98E-03
36GO:0042644: chloroplast nucleoid9.98E-03
37GO:0045298: tubulin complex9.98E-03
38GO:0000311: plastid large ribosomal subunit1.53E-02
39GO:0032040: small-subunit processome1.53E-02
40GO:0009508: plastid chromosome1.67E-02
41GO:0046658: anchored component of plasma membrane2.07E-02
42GO:0016020: membrane3.37E-02
43GO:0005618: cell wall4.07E-02
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Gene type



Gene DE type