co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
5	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
6	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
7	GO:0010398: xylogalacturonan metabolic process	0.00E+00
8	GO:0006099: tricarboxylic acid cycle	3.34E-05
9	GO:0006102: isocitrate metabolic process	1.25E-04
10	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.67E-04
11	GO:0042964: thioredoxin reduction	1.67E-04
12	GO:0006680: glucosylceramide catabolic process	1.67E-04
13	GO:0071422: succinate transmembrane transport	3.78E-04
14	GO:0046939: nucleotide phosphorylation	3.78E-04
15	GO:0009805: coumarin biosynthetic process	3.78E-04
16	GO:0080026: response to indolebutyric acid	3.78E-04
17	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.78E-04
18	GO:0051252: regulation of RNA metabolic process	3.78E-04
19	GO:0015709: thiosulfate transport	3.78E-04
20	GO:0031204: posttranslational protein targeting to membrane, translocation	3.78E-04
21	GO:0006517: protein deglycosylation	6.19E-04
22	GO:0010476: gibberellin mediated signaling pathway	6.19E-04
23	GO:0010325: raffinose family oligosaccharide biosynthetic process	6.19E-04
24	GO:0010272: response to silver ion	6.19E-04
25	GO:0006556: S-adenosylmethionine biosynthetic process	6.19E-04
26	GO:0009062: fatty acid catabolic process	6.19E-04
27	GO:0061158: 3'-UTR-mediated mRNA destabilization	6.19E-04
28	GO:0072661: protein targeting to plasma membrane	6.19E-04
29	GO:0046686: response to cadmium ion	6.52E-04
30	GO:0016998: cell wall macromolecule catabolic process	7.70E-04
31	GO:0070301: cellular response to hydrogen peroxide	8.83E-04
32	GO:0015729: oxaloacetate transport	8.83E-04
33	GO:0080024: indolebutyric acid metabolic process	8.83E-04
34	GO:0000187: activation of MAPK activity	8.83E-04
35	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.17E-03
36	GO:1902584: positive regulation of response to water deprivation	1.17E-03
37	GO:1901002: positive regulation of response to salt stress	1.17E-03
38	GO:0010188: response to microbial phytotoxin	1.17E-03
39	GO:0016192: vesicle-mediated transport	1.17E-03
40	GO:0045927: positive regulation of growth	1.48E-03
41	GO:0071423: malate transmembrane transport	1.48E-03
42	GO:0098719: sodium ion import across plasma membrane	1.48E-03
43	GO:0046283: anthocyanin-containing compound metabolic process	1.48E-03
44	GO:0006564: L-serine biosynthetic process	1.48E-03
45	GO:0006555: methionine metabolic process	1.83E-03
46	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.83E-03
47	GO:0060918: auxin transport	1.83E-03
48	GO:0009228: thiamine biosynthetic process	1.83E-03
49	GO:0035435: phosphate ion transmembrane transport	1.83E-03
50	GO:0009972: cytidine deamination	1.83E-03
51	GO:0051607: defense response to virus	2.06E-03
52	GO:0019509: L-methionine salvage from methylthioadenosine	2.19E-03
53	GO:0034389: lipid particle organization	2.19E-03
54	GO:0009082: branched-chain amino acid biosynthetic process	2.19E-03
55	GO:0009099: valine biosynthetic process	2.19E-03
56	GO:0080113: regulation of seed growth	2.19E-03
57	GO:0048444: floral organ morphogenesis	2.19E-03
58	GO:0080186: developmental vegetative growth	2.58E-03
59	GO:0071669: plant-type cell wall organization or biogenesis	2.58E-03
60	GO:0008272: sulfate transport	2.58E-03
61	GO:0050829: defense response to Gram-negative bacterium	2.58E-03
62	GO:0050832: defense response to fungus	2.67E-03
63	GO:0009819: drought recovery	2.99E-03
64	GO:0006491: N-glycan processing	2.99E-03
65	GO:0009407: toxin catabolic process	3.12E-03
66	GO:0009699: phenylpropanoid biosynthetic process	3.41E-03
67	GO:0006002: fructose 6-phosphate metabolic process	3.41E-03
68	GO:0019430: removal of superoxide radicals	3.41E-03
69	GO:0009097: isoleucine biosynthetic process	3.41E-03
70	GO:0042742: defense response to bacterium	3.70E-03
71	GO:0009056: catabolic process	3.86E-03
72	GO:0009098: leucine biosynthetic process	4.33E-03
73	GO:0051453: regulation of intracellular pH	4.33E-03
74	GO:0006032: chitin catabolic process	4.81E-03
75	GO:0009688: abscisic acid biosynthetic process	4.81E-03
76	GO:0043069: negative regulation of programmed cell death	4.81E-03
77	GO:0000272: polysaccharide catabolic process	5.32E-03
78	GO:0031347: regulation of defense response	5.58E-03
79	GO:0015031: protein transport	5.63E-03
80	GO:0006790: sulfur compound metabolic process	5.84E-03
81	GO:0071365: cellular response to auxin stimulus	5.84E-03
82	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	6.38E-03
83	GO:0006807: nitrogen compound metabolic process	6.38E-03
84	GO:0045454: cell redox homeostasis	7.29E-03
85	GO:0010053: root epidermal cell differentiation	7.50E-03
86	GO:0007030: Golgi organization	7.50E-03
87	GO:0046854: phosphatidylinositol phosphorylation	7.50E-03
88	GO:0009620: response to fungus	8.07E-03
89	GO:0000162: tryptophan biosynthetic process	8.10E-03
90	GO:0034976: response to endoplasmic reticulum stress	8.10E-03
91	GO:0006874: cellular calcium ion homeostasis	9.33E-03
92	GO:0010073: meristem maintenance	9.33E-03
93	GO:0009751: response to salicylic acid	9.34E-03
94	GO:0019915: lipid storage	9.97E-03
95	GO:0019748: secondary metabolic process	1.06E-02
96	GO:0009814: defense response, incompatible interaction	1.06E-02
97	GO:0006730: one-carbon metabolic process	1.06E-02
98	GO:0030433: ubiquitin-dependent ERAD pathway	1.06E-02
99	GO:0009693: ethylene biosynthetic process	1.13E-02
100	GO:0009306: protein secretion	1.20E-02
101	GO:0010051: xylem and phloem pattern formation	1.34E-02
102	GO:0006979: response to oxidative stress	1.38E-02
103	GO:0045489: pectin biosynthetic process	1.41E-02
104	GO:0006662: glycerol ether metabolic process	1.41E-02
105	GO:0048544: recognition of pollen	1.49E-02
106	GO:0006814: sodium ion transport	1.49E-02
107	GO:0006623: protein targeting to vacuole	1.56E-02
108	GO:0009851: auxin biosynthetic process	1.56E-02
109	GO:0010193: response to ozone	1.64E-02
110	GO:0000302: response to reactive oxygen species	1.64E-02
111	GO:0006635: fatty acid beta-oxidation	1.64E-02
112	GO:0009739: response to gibberellin	1.72E-02
113	GO:1901657: glycosyl compound metabolic process	1.80E-02
114	GO:0071281: cellular response to iron ion	1.80E-02
115	GO:0019760: glucosinolate metabolic process	1.88E-02
116	GO:0006464: cellular protein modification process	1.88E-02
117	GO:0071805: potassium ion transmembrane transport	1.96E-02
118	GO:0055114: oxidation-reduction process	2.12E-02
119	GO:0009615: response to virus	2.13E-02
120	GO:0009627: systemic acquired resistance	2.30E-02
121	GO:0006906: vesicle fusion	2.30E-02
122	GO:0006974: cellular response to DNA damage stimulus	2.30E-02
123	GO:0006888: ER to Golgi vesicle-mediated transport	2.39E-02
124	GO:0016049: cell growth	2.48E-02
125	GO:0009817: defense response to fungus, incompatible interaction	2.57E-02
126	GO:0048767: root hair elongation	2.67E-02
127	GO:0006499: N-terminal protein myristoylation	2.76E-02
128	GO:0009631: cold acclimation	2.85E-02
129	GO:0010043: response to zinc ion	2.85E-02
130	GO:0045087: innate immune response	3.05E-02
131	GO:0034599: cellular response to oxidative stress	3.14E-02
132	GO:0006839: mitochondrial transport	3.34E-02
133	GO:0006887: exocytosis	3.44E-02
134	GO:0042542: response to hydrogen peroxide	3.55E-02
135	GO:0006886: intracellular protein transport	3.64E-02
136	GO:0051707: response to other organism	3.65E-02
137	GO:0000209: protein polyubiquitination	3.75E-02
138	GO:0009636: response to toxic substance	3.96E-02
139	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.18E-02
140	GO:0000165: MAPK cascade	4.18E-02
141	GO:0009846: pollen germination	4.29E-02
142	GO:0009664: plant-type cell wall organization	4.29E-02
143	GO:0006629: lipid metabolic process	4.34E-02
144	GO:0006417: regulation of translation	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0047844: deoxycytidine deaminase activity	0.00E+00
3	GO:0016504: peptidase activator activity	0.00E+00
4	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
5	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.16E-05
6	GO:0008320: protein transmembrane transporter activity	9.72E-05
7	GO:2001227: quercitrin binding	1.67E-04
8	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.67E-04
9	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.67E-04
10	GO:0048037: cofactor binding	1.67E-04
11	GO:0004348: glucosylceramidase activity	1.67E-04
12	GO:2001147: camalexin binding	1.67E-04
13	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.67E-04
14	GO:0004649: poly(ADP-ribose) glycohydrolase activity	1.67E-04
15	GO:0010297: heteropolysaccharide binding	3.78E-04
16	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	3.78E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	3.78E-04
18	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.78E-04
19	GO:0008428: ribonuclease inhibitor activity	3.78E-04
20	GO:1990585: hydroxyproline O-arabinosyltransferase activity	3.78E-04
21	GO:0015117: thiosulfate transmembrane transporter activity	3.78E-04
22	GO:0019172: glyoxalase III activity	3.78E-04
23	GO:1901677: phosphate transmembrane transporter activity	3.78E-04
24	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	3.78E-04
25	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.78E-04
26	GO:0052739: phosphatidylserine 1-acylhydrolase activity	3.78E-04
27	GO:0010331: gibberellin binding	3.78E-04
28	GO:0004478: methionine adenosyltransferase activity	6.19E-04
29	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.19E-04
30	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.19E-04
31	GO:0015141: succinate transmembrane transporter activity	6.19E-04
32	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.19E-04
33	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.19E-04
34	GO:0017077: oxidative phosphorylation uncoupler activity	8.83E-04
35	GO:0052655: L-valine transaminase activity	8.83E-04
36	GO:0019201: nucleotide kinase activity	8.83E-04
37	GO:0015131: oxaloacetate transmembrane transporter activity	8.83E-04
38	GO:0052656: L-isoleucine transaminase activity	8.83E-04
39	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.83E-04
40	GO:0052654: L-leucine transaminase activity	8.83E-04
41	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.17E-03
42	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.17E-03
43	GO:0004084: branched-chain-amino-acid transaminase activity	1.17E-03
44	GO:0070628: proteasome binding	1.17E-03
45	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.17E-03
46	GO:0004031: aldehyde oxidase activity	1.17E-03
47	GO:0050302: indole-3-acetaldehyde oxidase activity	1.17E-03
48	GO:0004791: thioredoxin-disulfide reductase activity	1.33E-03
49	GO:0008374: O-acyltransferase activity	1.48E-03
50	GO:0008948: oxaloacetate decarboxylase activity	1.48E-03
51	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.83E-03
52	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.83E-03
53	GO:0035252: UDP-xylosyltransferase activity	1.83E-03
54	GO:0004126: cytidine deaminase activity	2.19E-03
55	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.19E-03
56	GO:0004017: adenylate kinase activity	2.19E-03
57	GO:0004602: glutathione peroxidase activity	2.19E-03
58	GO:0003872: 6-phosphofructokinase activity	2.58E-03
59	GO:0015140: malate transmembrane transporter activity	2.58E-03
60	GO:0043295: glutathione binding	2.58E-03
61	GO:0004708: MAP kinase kinase activity	2.99E-03
62	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.41E-03
63	GO:0004364: glutathione transferase activity	4.43E-03
64	GO:0004568: chitinase activity	4.81E-03
65	GO:0015386: potassium:proton antiporter activity	5.32E-03
66	GO:0015116: sulfate transmembrane transporter activity	5.84E-03
67	GO:0031625: ubiquitin protein ligase binding	6.87E-03
68	GO:0031624: ubiquitin conjugating enzyme binding	6.93E-03
69	GO:0008061: chitin binding	7.50E-03
70	GO:0005217: intracellular ligand-gated ion channel activity	7.50E-03
71	GO:0004970: ionotropic glutamate receptor activity	7.50E-03
72	GO:0005507: copper ion binding	8.02E-03
73	GO:0015035: protein disulfide oxidoreductase activity	9.10E-03
74	GO:0003756: protein disulfide isomerase activity	1.20E-02
75	GO:0003727: single-stranded RNA binding	1.20E-02
76	GO:0047134: protein-disulfide reductase activity	1.27E-02
77	GO:0001085: RNA polymerase II transcription factor binding	1.41E-02
78	GO:0005199: structural constituent of cell wall	1.41E-02
79	GO:0010181: FMN binding	1.49E-02
80	GO:0003824: catalytic activity	1.57E-02
81	GO:0016887: ATPase activity	1.66E-02
82	GO:0004518: nuclease activity	1.72E-02
83	GO:0015385: sodium:proton antiporter activity	1.80E-02
84	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.80E-02
85	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.96E-02
86	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.96E-02
87	GO:0016597: amino acid binding	2.04E-02
88	GO:0051213: dioxygenase activity	2.13E-02
89	GO:0102483: scopolin beta-glucosidase activity	2.39E-02
90	GO:0004806: triglyceride lipase activity	2.39E-02
91	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.39E-02
92	GO:0003729: mRNA binding	2.47E-02
93	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.57E-02
94	GO:0043531: ADP binding	2.61E-02
95	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.85E-02
96	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.85E-02
97	GO:0005524: ATP binding	2.89E-02
98	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.05E-02
99	GO:0003746: translation elongation factor activity	3.05E-02
100	GO:0061630: ubiquitin protein ligase activity	3.10E-02
101	GO:0003993: acid phosphatase activity	3.14E-02
102	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.24E-02
103	GO:0008422: beta-glucosidase activity	3.24E-02
104	GO:0000149: SNARE binding	3.24E-02
105	GO:0046872: metal ion binding	3.39E-02
106	GO:0005484: SNAP receptor activity	3.65E-02
107	GO:0051537: 2 iron, 2 sulfur cluster binding	3.86E-02
108	GO:0051287: NAD binding	4.18E-02
109	GO:0016301: kinase activity	4.57E-02
110	GO:0045330: aspartyl esterase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005783: endoplasmic reticulum	1.97E-05
4	GO:0005794: Golgi apparatus	1.10E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	1.67E-04
6	GO:0031901: early endosome membrane	1.91E-04
7	GO:0005886: plasma membrane	3.05E-04
8	GO:0030134: ER to Golgi transport vesicle	3.78E-04
9	GO:0009530: primary cell wall	6.19E-04
10	GO:0005829: cytosol	1.05E-03
11	GO:0005945: 6-phosphofructokinase complex	1.48E-03
12	GO:0032580: Golgi cisterna membrane	1.83E-03
13	GO:0009506: plasmodesma	1.97E-03
14	GO:0030173: integral component of Golgi membrane	2.19E-03
15	GO:0005801: cis-Golgi network	2.19E-03
16	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.58E-03
17	GO:0005768: endosome	3.07E-03
18	GO:0005773: vacuole	3.35E-03
19	GO:0005811: lipid particle	3.41E-03
20	GO:0031090: organelle membrane	3.86E-03
21	GO:0030665: clathrin-coated vesicle membrane	4.33E-03
22	GO:0017119: Golgi transport complex	4.81E-03
23	GO:0005737: cytoplasm	7.46E-03
24	GO:0005789: endoplasmic reticulum membrane	7.75E-03
25	GO:0005839: proteasome core complex	9.97E-03
26	GO:0005774: vacuolar membrane	1.11E-02
27	GO:0019898: extrinsic component of membrane	1.56E-02
28	GO:0009504: cell plate	1.56E-02
29	GO:0016592: mediator complex	1.72E-02
30	GO:0071944: cell periphery	1.80E-02
31	GO:0009505: plant-type cell wall	1.92E-02
32	GO:0016021: integral component of membrane	1.94E-02
33	GO:0005788: endoplasmic reticulum lumen	2.22E-02
34	GO:0005667: transcription factor complex	2.30E-02
35	GO:0000151: ubiquitin ligase complex	2.57E-02
36	GO:0031201: SNARE complex	3.44E-02
37	GO:0031902: late endosome membrane	3.44E-02
38	GO:0005802: trans-Golgi network	3.55E-02
39	GO:0005618: cell wall	3.91E-02
40	GO:0016020: membrane	4.80E-02