Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
2GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
3GO:0048227: plasma membrane to endosome transport0.00E+00
4GO:0006721: terpenoid metabolic process0.00E+00
5GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
6GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
7GO:0001881: receptor recycling0.00E+00
8GO:0016487: farnesol metabolic process2.53E-05
9GO:0015671: oxygen transport2.53E-05
10GO:1900424: regulation of defense response to bacterium2.53E-05
11GO:0006452: translational frameshifting6.44E-05
12GO:0009866: induced systemic resistance, ethylene mediated signaling pathway6.44E-05
13GO:0080026: response to indolebutyric acid6.44E-05
14GO:0006101: citrate metabolic process6.44E-05
15GO:0045905: positive regulation of translational termination6.44E-05
16GO:0045901: positive regulation of translational elongation6.44E-05
17GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.13E-04
18GO:0008333: endosome to lysosome transport1.13E-04
19GO:0007264: small GTPase mediated signal transduction1.39E-04
20GO:0080024: indolebutyric acid metabolic process1.69E-04
21GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.04E-04
22GO:1902183: regulation of shoot apical meristem development2.95E-04
23GO:0006097: glyoxylate cycle2.95E-04
24GO:0002238: response to molecule of fungal origin3.65E-04
25GO:1900150: regulation of defense response to fungus5.89E-04
26GO:0006102: isocitrate metabolic process5.89E-04
27GO:2000031: regulation of salicylic acid mediated signaling pathway6.69E-04
28GO:0009620: response to fungus7.13E-04
29GO:0015780: nucleotide-sugar transport7.52E-04
30GO:0030042: actin filament depolymerization8.38E-04
31GO:2000652: regulation of secondary cell wall biogenesis1.01E-03
32GO:0010102: lateral root morphogenesis1.20E-03
33GO:0006511: ubiquitin-dependent protein catabolic process1.22E-03
34GO:0007034: vacuolar transport1.30E-03
35GO:0090351: seedling development1.40E-03
36GO:0000162: tryptophan biosynthetic process1.50E-03
37GO:0006863: purine nucleobase transport1.50E-03
38GO:0019748: secondary metabolic process1.95E-03
39GO:0009411: response to UV2.06E-03
40GO:0010584: pollen exine formation2.18E-03
41GO:0042147: retrograde transport, endosome to Golgi2.30E-03
42GO:0006623: protein targeting to vacuole2.80E-03
43GO:0002229: defense response to oomycetes2.94E-03
44GO:0046686: response to cadmium ion3.53E-03
45GO:0009751: response to salicylic acid3.56E-03
46GO:0001666: response to hypoxia3.77E-03
47GO:0009627: systemic acquired resistance4.06E-03
48GO:0006950: response to stress4.21E-03
49GO:0009817: defense response to fungus, incompatible interaction4.52E-03
50GO:0008219: cell death4.52E-03
51GO:0048767: root hair elongation4.67E-03
52GO:0006099: tricarboxylic acid cycle5.47E-03
53GO:0006839: mitochondrial transport5.81E-03
54GO:0006631: fatty acid metabolic process5.98E-03
55GO:0008643: carbohydrate transport6.67E-03
56GO:0031347: regulation of defense response7.22E-03
57GO:0000165: MAPK cascade7.22E-03
58GO:0009809: lignin biosynthetic process7.78E-03
59GO:0051603: proteolysis involved in cellular protein catabolic process7.97E-03
60GO:0006508: proteolysis8.34E-03
61GO:0042744: hydrogen peroxide catabolic process1.28E-02
62GO:0006979: response to oxidative stress1.30E-02
63GO:0006413: translational initiation1.39E-02
64GO:0009733: response to auxin1.45E-02
65GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.58E-02
66GO:0009739: response to gibberellin1.58E-02
67GO:0015031: protein transport1.65E-02
68GO:0009617: response to bacterium1.66E-02
69GO:0055114: oxidation-reduction process1.71E-02
70GO:0006810: transport1.90E-02
71GO:0009723: response to ethylene2.21E-02
72GO:0046777: protein autophosphorylation2.44E-02
73GO:0045892: negative regulation of transcription, DNA-templated2.67E-02
74GO:0009737: response to abscisic acid2.76E-02
75GO:0016042: lipid catabolic process3.01E-02
76GO:0009753: response to jasmonic acid3.23E-02
77GO:0009873: ethylene-activated signaling pathway3.68E-02
78GO:0006357: regulation of transcription from RNA polymerase II promoter3.75E-02
79GO:0009651: response to salt stress4.34E-02
80GO:0009738: abscisic acid-activated signaling pathway4.51E-02
RankGO TermAdjusted P value
1GO:0047886: farnesol dehydrogenase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0005093: Rab GDP-dissociation inhibitor activity1.81E-07
4GO:0005344: oxygen transporter activity2.53E-05
5GO:0004048: anthranilate phosphoribosyltransferase activity2.53E-05
6GO:0004298: threonine-type endopeptidase activity5.82E-05
7GO:0003994: aconitate hydratase activity6.44E-05
8GO:0008233: peptidase activity2.41E-04
9GO:0005096: GTPase activator activity2.67E-04
10GO:0004709: MAP kinase kinase kinase activity3.65E-04
11GO:0004556: alpha-amylase activity3.65E-04
12GO:0005338: nucleotide-sugar transmembrane transporter activity5.11E-04
13GO:0043022: ribosome binding5.89E-04
14GO:0015114: phosphate ion transmembrane transporter activity1.20E-03
15GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.20E-03
16GO:0005345: purine nucleobase transmembrane transporter activity1.72E-03
17GO:0050662: coenzyme binding2.68E-03
18GO:0016491: oxidoreductase activity2.85E-03
19GO:0003746: translation elongation factor activity5.31E-03
20GO:0004712: protein serine/threonine/tyrosine kinase activity5.64E-03
21GO:0051539: 4 iron, 4 sulfur cluster binding5.81E-03
22GO:0004185: serine-type carboxypeptidase activity6.32E-03
23GO:0016298: lipase activity7.97E-03
24GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups8.93E-03
25GO:0019825: oxygen binding9.07E-03
26GO:0003779: actin binding9.74E-03
27GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.19E-02
28GO:0004252: serine-type endopeptidase activity1.25E-02
29GO:0005351: sugar:proton symporter activity1.44E-02
30GO:0003743: translation initiation factor activity1.63E-02
31GO:0000287: magnesium ion binding1.97E-02
32GO:0004601: peroxidase activity1.99E-02
33GO:0020037: heme binding2.04E-02
34GO:0004497: monooxygenase activity2.32E-02
35GO:0052689: carboxylic ester hydrolase activity2.50E-02
36GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.64E-02
37GO:0004722: protein serine/threonine phosphatase activity2.82E-02
38GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.85E-02
39GO:0005524: ATP binding3.62E-02
RankGO TermAdjusted P value
1GO:0012510: trans-Golgi network transport vesicle membrane2.53E-05
2GO:0019774: proteasome core complex, beta-subunit complex2.53E-05
3GO:0005774: vacuolar membrane5.40E-05
4GO:0005839: proteasome core complex5.82E-05
5GO:0030904: retromer complex3.65E-04
6GO:0005771: multivesicular body3.65E-04
7GO:0000502: proteasome complex5.54E-04
8GO:0031090: organelle membrane7.52E-04
9GO:0005769: early endosome1.50E-03
10GO:0015629: actin cytoskeleton2.06E-03
11GO:0005829: cytosol2.11E-03
12GO:0005783: endoplasmic reticulum5.70E-03
13GO:0031902: late endosome membrane5.98E-03
14GO:0005618: cell wall1.15E-02
15GO:0005615: extracellular space1.58E-02
16GO:0005773: vacuole1.67E-02
17GO:0005743: mitochondrial inner membrane2.91E-02
18GO:0043231: intracellular membrane-bounded organelle3.29E-02
19GO:0048046: apoplast4.69E-02
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Gene type



Gene DE type