co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
2	GO:0006438: valyl-tRNA aminoacylation	2.88E-05
3	GO:0006426: glycyl-tRNA aminoacylation	2.88E-05
4	GO:1901529: positive regulation of anion channel activity	7.28E-05
5	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.27E-04
6	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.27E-04
7	GO:0009647: skotomorphogenesis	1.89E-04
8	GO:0042991: transcription factor import into nucleus	2.57E-04
9	GO:0006808: regulation of nitrogen utilization	2.57E-04
10	GO:0048497: maintenance of floral organ identity	3.30E-04
11	GO:0007094: mitotic spindle assembly checkpoint	3.30E-04
12	GO:0009640: photomorphogenesis	4.87E-04
13	GO:0045995: regulation of embryonic development	5.68E-04
14	GO:0009736: cytokinin-activated signaling pathway	6.49E-04
15	GO:0009642: response to light intensity	6.55E-04
16	GO:0010332: response to gamma radiation	8.35E-04
17	GO:0009835: fruit ripening	8.35E-04
18	GO:0007346: regulation of mitotic cell cycle	9.29E-04
19	GO:0005982: starch metabolic process	9.29E-04
20	GO:0006949: syncytium formation	1.03E-03
21	GO:0051301: cell division	1.15E-03
22	GO:0012501: programmed cell death	1.23E-03
23	GO:0005983: starch catabolic process	1.23E-03
24	GO:2000012: regulation of auxin polar transport	1.34E-03
25	GO:0010020: chloroplast fission	1.45E-03
26	GO:0007034: vacuolar transport	1.45E-03
27	GO:0019953: sexual reproduction	1.92E-03
28	GO:0006418: tRNA aminoacylation for protein translation	1.92E-03
29	GO:0048278: vesicle docking	2.04E-03
30	GO:0009826: unidimensional cell growth	2.26E-03
31	GO:0009693: ethylene biosynthetic process	2.30E-03
32	GO:0010091: trichome branching	2.43E-03
33	GO:0007049: cell cycle	2.61E-03
34	GO:0009741: response to brassinosteroid	2.84E-03
35	GO:0061025: membrane fusion	2.99E-03
36	GO:0048825: cotyledon development	3.13E-03
37	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.28E-03
38	GO:0010583: response to cyclopentenone	3.43E-03
39	GO:0071281: cellular response to iron ion	3.58E-03
40	GO:0030163: protein catabolic process	3.58E-03
41	GO:0009828: plant-type cell wall loosening	3.73E-03
42	GO:0006906: vesicle fusion	4.54E-03
43	GO:0015995: chlorophyll biosynthetic process	4.71E-03
44	GO:0048573: photoperiodism, flowering	4.71E-03
45	GO:0000160: phosphorelay signal transduction system	5.22E-03
46	GO:0030001: metal ion transport	6.50E-03
47	GO:0006887: exocytosis	6.69E-03
48	GO:0009793: embryo development ending in seed dormancy	7.19E-03
49	GO:0006355: regulation of transcription, DNA-templated	7.56E-03
50	GO:0009664: plant-type cell wall organization	8.29E-03
51	GO:0009740: gibberellic acid mediated signaling pathway	1.07E-02
52	GO:0051726: regulation of cell cycle	1.16E-02
53	GO:0009742: brassinosteroid mediated signaling pathway	1.16E-02
54	GO:0009058: biosynthetic process	1.36E-02
55	GO:0006633: fatty acid biosynthetic process	1.54E-02
56	GO:0040008: regulation of growth	1.59E-02
57	GO:0010468: regulation of gene expression	1.86E-02
58	GO:0005975: carbohydrate metabolic process	2.32E-02
59	GO:0006351: transcription, DNA-templated	2.37E-02
60	GO:0009723: response to ethylene	2.48E-02
61	GO:0048366: leaf development	2.52E-02
62	GO:0016192: vesicle-mediated transport	2.71E-02
63	GO:0046777: protein autophosphorylation	2.74E-02
64	GO:0015979: photosynthesis	2.87E-02
65	GO:0006886: intracellular protein transport	3.04E-02
66	GO:0016042: lipid catabolic process	3.38E-02
67	GO:0048364: root development	3.55E-02
68	GO:0016310: phosphorylation	3.74E-02
69	GO:0009873: ethylene-activated signaling pathway	4.13E-02
70	GO:0006508: proteolysis	4.67E-02
71	GO:0009735: response to cytokinin	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
3	GO:0009374: biotin binding	2.88E-05
4	GO:0004832: valine-tRNA ligase activity	2.88E-05
5	GO:0004820: glycine-tRNA ligase activity	2.88E-05
6	GO:0016630: protochlorophyllide reductase activity	7.28E-05
7	GO:0019200: carbohydrate kinase activity	7.28E-05
8	GO:0017150: tRNA dihydrouridine synthase activity	1.27E-04
9	GO:0003989: acetyl-CoA carboxylase activity	3.30E-04
10	GO:2001070: starch binding	4.06E-04
11	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.55E-04
12	GO:0005515: protein binding	7.14E-04
13	GO:0004860: protein kinase inhibitor activity	1.13E-03
14	GO:0004190: aspartic-type endopeptidase activity	1.56E-03
15	GO:0042802: identical protein binding	1.93E-03
16	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.04E-03
17	GO:0004812: aminoacyl-tRNA ligase activity	2.57E-03
18	GO:0003824: catalytic activity	2.80E-03
19	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.84E-03
20	GO:0016853: isomerase activity	2.99E-03
21	GO:0000156: phosphorelay response regulator activity	3.58E-03
22	GO:0000149: SNARE binding	6.31E-03
23	GO:0005484: SNAP receptor activity	7.08E-03
24	GO:0043621: protein self-association	7.48E-03
25	GO:0005198: structural molecule activity	7.68E-03
26	GO:0016298: lipase activity	8.92E-03
27	GO:0004650: polygalacturonase activity	1.05E-02
28	GO:0030170: pyridoxal phosphate binding	1.41E-02
29	GO:0046983: protein dimerization activity	2.04E-02
30	GO:0050660: flavin adenine dinucleotide binding	2.48E-02
31	GO:0008233: peptidase activity	2.58E-02
32	GO:0052689: carboxylic ester hydrolase activity	2.80E-02
33	GO:0003924: GTPase activity	3.45E-02
34	GO:0008289: lipid binding	4.36E-02
35	GO:0016887: ATPase activity	4.71E-02
36	GO:0005524: ATP binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.28E-05
2	GO:0009317: acetyl-CoA carboxylase complex	1.27E-04
3	GO:0042646: plastid nucleoid	1.89E-04
4	GO:0005828: kinetochore microtubule	2.57E-04
5	GO:0000776: kinetochore	3.30E-04
6	GO:0009570: chloroplast stroma	3.51E-04
7	GO:0000777: condensed chromosome kinetochore	4.86E-04
8	GO:0000815: ESCRT III complex	4.86E-04
9	GO:0010369: chromocenter	4.86E-04
10	GO:0042644: chloroplast nucleoid	8.35E-04
11	GO:0005876: spindle microtubule	9.29E-04
12	GO:0090404: pollen tube tip	1.13E-03
13	GO:0030659: cytoplasmic vesicle membrane	1.45E-03
14	GO:0009504: cell plate	3.13E-03
15	GO:0031201: SNARE complex	6.69E-03
16	GO:0009534: chloroplast thylakoid	9.07E-03
17	GO:0005635: nuclear envelope	9.14E-03
18	GO:0012505: endomembrane system	1.09E-02
19	GO:0009524: phragmoplast	1.36E-02
20	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.39E-02
21	GO:0009507: chloroplast	3.98E-02