co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0036172: thiamine salvage	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0009090: homoserine biosynthetic process	3.37E-04
8	GO:0043609: regulation of carbon utilization	3.37E-04
9	GO:0000066: mitochondrial ornithine transport	3.37E-04
10	GO:0050801: ion homeostasis	3.37E-04
11	GO:0034757: negative regulation of iron ion transport	3.37E-04
12	GO:0046620: regulation of organ growth	3.60E-04
13	GO:0000373: Group II intron splicing	5.29E-04
14	GO:0010271: regulation of chlorophyll catabolic process	7.34E-04
15	GO:0010582: floral meristem determinacy	9.59E-04
16	GO:0080117: secondary growth	1.19E-03
17	GO:0071398: cellular response to fatty acid	1.19E-03
18	GO:0030029: actin filament-based process	1.19E-03
19	GO:0010447: response to acidic pH	1.19E-03
20	GO:0006000: fructose metabolic process	1.19E-03
21	GO:0051017: actin filament bundle assembly	1.68E-03
22	GO:0005992: trehalose biosynthetic process	1.68E-03
23	GO:0009800: cinnamic acid biosynthetic process	1.71E-03
24	GO:2000904: regulation of starch metabolic process	1.71E-03
25	GO:0009067: aspartate family amino acid biosynthetic process	1.71E-03
26	GO:0051513: regulation of monopolar cell growth	1.71E-03
27	GO:0009102: biotin biosynthetic process	1.71E-03
28	GO:0051639: actin filament network formation	1.71E-03
29	GO:0010239: chloroplast mRNA processing	1.71E-03
30	GO:0044211: CTP salvage	1.71E-03
31	GO:0009451: RNA modification	1.96E-03
32	GO:0044206: UMP salvage	2.30E-03
33	GO:0006021: inositol biosynthetic process	2.30E-03
34	GO:0009755: hormone-mediated signaling pathway	2.30E-03
35	GO:0051764: actin crosslink formation	2.30E-03
36	GO:0009696: salicylic acid metabolic process	2.93E-03
37	GO:0080110: sporopollenin biosynthetic process	2.93E-03
38	GO:0016131: brassinosteroid metabolic process	2.93E-03
39	GO:0009229: thiamine diphosphate biosynthetic process	2.93E-03
40	GO:0009107: lipoate biosynthetic process	2.93E-03
41	GO:0010438: cellular response to sulfur starvation	2.93E-03
42	GO:0010158: abaxial cell fate specification	2.93E-03
43	GO:0006559: L-phenylalanine catabolic process	3.63E-03
44	GO:0006206: pyrimidine nucleobase metabolic process	3.63E-03
45	GO:0009228: thiamine biosynthetic process	3.63E-03
46	GO:0048831: regulation of shoot system development	3.63E-03
47	GO:0003006: developmental process involved in reproduction	3.63E-03
48	GO:0048827: phyllome development	3.63E-03
49	GO:0016554: cytidine to uridine editing	3.63E-03
50	GO:0009658: chloroplast organization	3.68E-03
51	GO:0031930: mitochondria-nucleus signaling pathway	4.37E-03
52	GO:0048509: regulation of meristem development	4.37E-03
53	GO:0009088: threonine biosynthetic process	4.37E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.37E-03
55	GO:2000067: regulation of root morphogenesis	4.37E-03
56	GO:0009639: response to red or far red light	4.99E-03
57	GO:0010098: suspensor development	5.15E-03
58	GO:0010050: vegetative phase change	5.15E-03
59	GO:0009819: drought recovery	5.99E-03
60	GO:0070413: trehalose metabolism in response to stress	5.99E-03
61	GO:0010439: regulation of glucosinolate biosynthetic process	5.99E-03
62	GO:0030091: protein repair	5.99E-03
63	GO:0009850: auxin metabolic process	5.99E-03
64	GO:2000070: regulation of response to water deprivation	5.99E-03
65	GO:0000105: histidine biosynthetic process	5.99E-03
66	GO:0007186: G-protein coupled receptor signaling pathway	6.87E-03
67	GO:0009657: plastid organization	6.87E-03
68	GO:0032544: plastid translation	6.87E-03
69	GO:0006002: fructose 6-phosphate metabolic process	6.87E-03
70	GO:0071482: cellular response to light stimulus	6.87E-03
71	GO:0009827: plant-type cell wall modification	6.87E-03
72	GO:0048507: meristem development	7.79E-03
73	GO:0030244: cellulose biosynthetic process	7.79E-03
74	GO:0006098: pentose-phosphate shunt	7.79E-03
75	GO:0000160: phosphorelay signal transduction system	8.19E-03
76	GO:0006499: N-terminal protein myristoylation	8.59E-03
77	GO:0040008: regulation of growth	8.70E-03
78	GO:0009086: methionine biosynthetic process	8.75E-03
79	GO:1900865: chloroplast RNA modification	8.75E-03
80	GO:0016571: histone methylation	8.75E-03
81	GO:0016573: histone acetylation	8.75E-03
82	GO:0010018: far-red light signaling pathway	8.75E-03
83	GO:0009733: response to auxin	9.13E-03
84	GO:0006535: cysteine biosynthetic process from serine	9.76E-03
85	GO:0010192: mucilage biosynthetic process	9.76E-03
86	GO:0009682: induced systemic resistance	1.08E-02
87	GO:0006415: translational termination	1.08E-02
88	GO:0009089: lysine biosynthetic process via diaminopimelate	1.08E-02
89	GO:0045037: protein import into chloroplast stroma	1.19E-02
90	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.19E-02
91	GO:0006790: sulfur compound metabolic process	1.19E-02
92	GO:0009926: auxin polar transport	1.28E-02
93	GO:0010229: inflorescence development	1.30E-02
94	GO:0006094: gluconeogenesis	1.30E-02
95	GO:0010020: chloroplast fission	1.42E-02
96	GO:0010540: basipetal auxin transport	1.42E-02
97	GO:0009266: response to temperature stimulus	1.42E-02
98	GO:0048467: gynoecium development	1.42E-02
99	GO:0009636: response to toxic substance	1.44E-02
100	GO:0010039: response to iron ion	1.54E-02
101	GO:0046854: phosphatidylinositol phosphorylation	1.54E-02
102	GO:0009734: auxin-activated signaling pathway	1.55E-02
103	GO:0042753: positive regulation of circadian rhythm	1.66E-02
104	GO:0006863: purine nucleobase transport	1.66E-02
105	GO:0009833: plant-type primary cell wall biogenesis	1.66E-02
106	GO:0009736: cytokinin-activated signaling pathway	1.73E-02
107	GO:0030150: protein import into mitochondrial matrix	1.79E-02
108	GO:0006338: chromatin remodeling	1.79E-02
109	GO:0006289: nucleotide-excision repair	1.79E-02
110	GO:0019344: cysteine biosynthetic process	1.79E-02
111	GO:0048316: seed development	2.11E-02
112	GO:0016226: iron-sulfur cluster assembly	2.19E-02
113	GO:0009416: response to light stimulus	2.19E-02
114	GO:0009693: ethylene biosynthetic process	2.33E-02
115	GO:0071215: cellular response to abscisic acid stimulus	2.33E-02
116	GO:0009686: gibberellin biosynthetic process	2.33E-02
117	GO:0009625: response to insect	2.33E-02
118	GO:0006284: base-excision repair	2.47E-02
119	GO:0010584: pollen exine formation	2.47E-02
120	GO:0070417: cellular response to cold	2.62E-02
121	GO:0016117: carotenoid biosynthetic process	2.62E-02
122	GO:0010087: phloem or xylem histogenesis	2.77E-02
123	GO:0045489: pectin biosynthetic process	2.92E-02
124	GO:0009958: positive gravitropism	2.92E-02
125	GO:0010182: sugar mediated signaling pathway	2.92E-02
126	GO:0048868: pollen tube development	2.92E-02
127	GO:0009741: response to brassinosteroid	2.92E-02
128	GO:0010268: brassinosteroid homeostasis	2.92E-02
129	GO:0048544: recognition of pollen	3.07E-02
130	GO:0048825: cotyledon development	3.23E-02
131	GO:0055072: iron ion homeostasis	3.23E-02
132	GO:0009058: biosynthetic process	3.25E-02
133	GO:0055114: oxidation-reduction process	3.38E-02
134	GO:0010583: response to cyclopentenone	3.55E-02
135	GO:0019761: glucosinolate biosynthetic process	3.55E-02
136	GO:0007264: small GTPase mediated signal transduction	3.55E-02
137	GO:0009790: embryo development	3.59E-02
138	GO:0009793: embryo development ending in seed dormancy	3.59E-02
139	GO:0006464: cellular protein modification process	3.88E-02
140	GO:0009911: positive regulation of flower development	4.40E-02
141	GO:0001666: response to hypoxia	4.40E-02
142	GO:0010029: regulation of seed germination	4.58E-02
143	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.58E-02
144	GO:0009739: response to gibberellin	4.74E-02
145	GO:0009627: systemic acquired resistance	4.76E-02
146	GO:0010411: xyloglucan metabolic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
3	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
4	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
5	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
6	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
7	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
8	GO:0008805: carbon-monoxide oxygenase activity	5.13E-06
9	GO:0005290: L-histidine transmembrane transporter activity	3.37E-04
10	GO:0008395: steroid hydroxylase activity	3.37E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.37E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.37E-04
13	GO:0005227: calcium activated cation channel activity	3.37E-04
14	GO:0004805: trehalose-phosphatase activity	7.29E-04
15	GO:0008934: inositol monophosphate 1-phosphatase activity	7.34E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	7.34E-04
17	GO:0000064: L-ornithine transmembrane transporter activity	7.34E-04
18	GO:0004412: homoserine dehydrogenase activity	7.34E-04
19	GO:0050736: O-malonyltransferase activity	7.34E-04
20	GO:0009884: cytokinin receptor activity	7.34E-04
21	GO:0050017: L-3-cyanoalanine synthase activity	7.34E-04
22	GO:0017118: lipoyltransferase activity	7.34E-04
23	GO:0016415: octanoyltransferase activity	7.34E-04
24	GO:0004047: aminomethyltransferase activity	7.34E-04
25	GO:0052832: inositol monophosphate 3-phosphatase activity	7.34E-04
26	GO:0045548: phenylalanine ammonia-lyase activity	1.19E-03
27	GO:0004148: dihydrolipoyl dehydrogenase activity	1.19E-03
28	GO:0005034: osmosensor activity	1.19E-03
29	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.19E-03
30	GO:0015181: arginine transmembrane transporter activity	1.71E-03
31	GO:0017172: cysteine dioxygenase activity	1.71E-03
32	GO:0080031: methyl salicylate esterase activity	1.71E-03
33	GO:0015189: L-lysine transmembrane transporter activity	1.71E-03
34	GO:0004072: aspartate kinase activity	1.71E-03
35	GO:0070628: proteasome binding	2.30E-03
36	GO:0004845: uracil phosphoribosyltransferase activity	2.30E-03
37	GO:0004519: endonuclease activity	2.73E-03
38	GO:0005471: ATP:ADP antiporter activity	2.93E-03
39	GO:0008725: DNA-3-methyladenine glycosylase activity	2.93E-03
40	GO:0000293: ferric-chelate reductase activity	3.63E-03
41	GO:0031593: polyubiquitin binding	3.63E-03
42	GO:2001070: starch binding	3.63E-03
43	GO:0080030: methyl indole-3-acetate esterase activity	3.63E-03
44	GO:0004332: fructose-bisphosphate aldolase activity	3.63E-03
45	GO:0004709: MAP kinase kinase kinase activity	3.63E-03
46	GO:0019901: protein kinase binding	3.85E-03
47	GO:0004849: uridine kinase activity	4.37E-03
48	GO:0019900: kinase binding	4.37E-03
49	GO:0004124: cysteine synthase activity	4.37E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.37E-03
51	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.37E-03
52	GO:0051015: actin filament binding	4.69E-03
53	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.79E-03
54	GO:0003747: translation release factor activity	7.79E-03
55	GO:0004673: protein histidine kinase activity	9.76E-03
56	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.08E-02
57	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.08E-02
58	GO:0015266: protein channel activity	1.30E-02
59	GO:0000155: phosphorelay sensor kinase activity	1.30E-02
60	GO:0009982: pseudouridine synthase activity	1.30E-02
61	GO:0043621: protein self-association	1.38E-02
62	GO:0005525: GTP binding	1.53E-02
63	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.66E-02
64	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.66E-02
65	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.66E-02
66	GO:0008134: transcription factor binding	1.79E-02
67	GO:0031418: L-ascorbic acid binding	1.79E-02
68	GO:0004857: enzyme inhibitor activity	1.79E-02
69	GO:0043130: ubiquitin binding	1.79E-02
70	GO:0003723: RNA binding	1.89E-02
71	GO:0043424: protein histidine kinase binding	1.92E-02
72	GO:0005345: purine nucleobase transmembrane transporter activity	1.92E-02
73	GO:0003964: RNA-directed DNA polymerase activity	2.05E-02
74	GO:0030570: pectate lyase activity	2.33E-02
75	GO:0016760: cellulose synthase (UDP-forming) activity	2.33E-02
76	GO:0004871: signal transducer activity	2.81E-02
77	GO:0010181: FMN binding	3.07E-02
78	GO:0050662: coenzyme binding	3.07E-02
79	GO:0019843: rRNA binding	3.08E-02
80	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.39E-02
81	GO:0030170: pyridoxal phosphate binding	3.42E-02
82	GO:0003924: GTPase activity	3.44E-02
83	GO:0016491: oxidoreductase activity	3.45E-02
84	GO:0000156: phosphorelay response regulator activity	3.72E-02
85	GO:0016791: phosphatase activity	3.88E-02
86	GO:0016759: cellulose synthase activity	3.88E-02
87	GO:0003684: damaged DNA binding	3.88E-02
88	GO:0005200: structural constituent of cytoskeleton	4.05E-02
89	GO:0008483: transaminase activity	4.05E-02
90	GO:0016597: amino acid binding	4.23E-02
91	GO:0016413: O-acetyltransferase activity	4.23E-02
92	GO:0051213: dioxygenase activity	4.40E-02
93	GO:0004721: phosphoprotein phosphatase activity	4.94E-02
94	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0009513: etioplast	7.34E-04
5	GO:0009707: chloroplast outer membrane	1.08E-03
6	GO:0009509: chromoplast	1.19E-03
7	GO:0009507: chloroplast	1.35E-03
8	GO:0032432: actin filament bundle	1.71E-03
9	GO:0031305: integral component of mitochondrial inner membrane	5.99E-03
10	GO:0048226: Casparian strip	5.99E-03
11	GO:0009501: amyloplast	5.99E-03
12	GO:0005884: actin filament	1.08E-02
13	GO:0016602: CCAAT-binding factor complex	1.30E-02
14	GO:0030095: chloroplast photosystem II	1.42E-02
15	GO:0005856: cytoskeleton	1.44E-02
16	GO:0009654: photosystem II oxygen evolving complex	1.92E-02
17	GO:0015629: actin cytoskeleton	2.33E-02
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.47E-02
19	GO:0005770: late endosome	2.92E-02
20	GO:0031965: nuclear membrane	3.23E-02
21	GO:0019898: extrinsic component of membrane	3.23E-02