co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0009733: response to auxin	1.10E-06
7	GO:0061062: regulation of nematode larval development	2.11E-05
8	GO:0046620: regulation of organ growth	6.30E-05
9	GO:0009734: auxin-activated signaling pathway	9.27E-05
10	GO:0009686: gibberellin biosynthetic process	1.11E-04
11	GO:0009926: auxin polar transport	3.11E-04
12	GO:0010583: response to cyclopentenone	3.16E-04
13	GO:0048497: maintenance of floral organ identity	3.62E-04
14	GO:0051013: microtubule severing	7.03E-04
15	GO:0034757: negative regulation of iron ion transport	7.03E-04
16	GO:0045786: negative regulation of cell cycle	7.03E-04
17	GO:0010726: positive regulation of hydrogen peroxide metabolic process	7.03E-04
18	GO:0006438: valyl-tRNA aminoacylation	7.03E-04
19	GO:0046520: sphingoid biosynthetic process	7.03E-04
20	GO:0032958: inositol phosphate biosynthetic process	7.03E-04
21	GO:0010070: zygote asymmetric cell division	7.03E-04
22	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.54E-04
23	GO:0006351: transcription, DNA-templated	1.17E-03
24	GO:0007186: G-protein coupled receptor signaling pathway	1.28E-03
25	GO:0016567: protein ubiquitination	1.39E-03
26	GO:2000123: positive regulation of stomatal complex development	1.52E-03
27	GO:0043039: tRNA aminoacylation	1.52E-03
28	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.52E-03
29	GO:0010271: regulation of chlorophyll catabolic process	1.52E-03
30	GO:0001736: establishment of planar polarity	1.52E-03
31	GO:0009786: regulation of asymmetric cell division	1.52E-03
32	GO:0031648: protein destabilization	1.52E-03
33	GO:0000373: Group II intron splicing	1.54E-03
34	GO:0009416: response to light stimulus	1.99E-03
35	GO:0006782: protoporphyrinogen IX biosynthetic process	2.14E-03
36	GO:0048829: root cap development	2.14E-03
37	GO:0048575: short-day photoperiodism, flowering	2.50E-03
38	GO:0045910: negative regulation of DNA recombination	2.50E-03
39	GO:0090506: axillary shoot meristem initiation	2.50E-03
40	GO:0080117: secondary growth	2.50E-03
41	GO:0071398: cellular response to fatty acid	2.50E-03
42	GO:0006065: UDP-glucuronate biosynthetic process	2.50E-03
43	GO:0010371: regulation of gibberellin biosynthetic process	3.64E-03
44	GO:0006020: inositol metabolic process	3.64E-03
45	GO:0051513: regulation of monopolar cell growth	3.64E-03
46	GO:0034059: response to anoxia	3.64E-03
47	GO:0007276: gamete generation	3.64E-03
48	GO:0006424: glutamyl-tRNA aminoacylation	3.64E-03
49	GO:0010321: regulation of vegetative phase change	3.64E-03
50	GO:0009887: animal organ morphogenesis	3.65E-03
51	GO:0009825: multidimensional cell growth	4.10E-03
52	GO:0006863: purine nucleobase transport	4.57E-03
53	GO:2000038: regulation of stomatal complex development	4.92E-03
54	GO:0042991: transcription factor import into nucleus	4.92E-03
55	GO:0006021: inositol biosynthetic process	4.92E-03
56	GO:0009956: radial pattern formation	4.92E-03
57	GO:0009755: hormone-mediated signaling pathway	4.92E-03
58	GO:0009658: chloroplast organization	5.80E-03
59	GO:0010438: cellular response to sulfur starvation	6.33E-03
60	GO:0010375: stomatal complex patterning	6.33E-03
61	GO:0009696: salicylic acid metabolic process	6.33E-03
62	GO:0045487: gibberellin catabolic process	6.33E-03
63	GO:0009107: lipoate biosynthetic process	6.33E-03
64	GO:0030001: metal ion transport	7.09E-03
65	GO:0071215: cellular response to abscisic acid stimulus	7.40E-03
66	GO:0048366: leaf development	7.73E-03
67	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	7.86E-03
68	GO:0010358: leaf shaping	7.86E-03
69	GO:0016554: cytidine to uridine editing	7.86E-03
70	GO:0009913: epidermal cell differentiation	7.86E-03
71	GO:1902456: regulation of stomatal opening	7.86E-03
72	GO:0048831: regulation of shoot system development	7.86E-03
73	GO:0003006: developmental process involved in reproduction	7.86E-03
74	GO:0010942: positive regulation of cell death	7.86E-03
75	GO:0010091: trichome branching	8.06E-03
76	GO:0042127: regulation of cell proliferation	8.06E-03
77	GO:0006468: protein phosphorylation	8.40E-03
78	GO:0006355: regulation of transcription, DNA-templated	8.60E-03
79	GO:0010087: phloem or xylem histogenesis	9.46E-03
80	GO:0031930: mitochondria-nucleus signaling pathway	9.51E-03
81	GO:0048509: regulation of meristem development	9.51E-03
82	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	9.51E-03
83	GO:0040008: regulation of growth	9.68E-03
84	GO:0009741: response to brassinosteroid	1.02E-02
85	GO:0009958: positive gravitropism	1.02E-02
86	GO:0010305: leaf vascular tissue pattern formation	1.02E-02
87	GO:0071555: cell wall organization	1.05E-02
88	GO:0007050: cell cycle arrest	1.13E-02
89	GO:1900056: negative regulation of leaf senescence	1.13E-02
90	GO:0010098: suspensor development	1.13E-02
91	GO:0000082: G1/S transition of mitotic cell cycle	1.13E-02
92	GO:0010444: guard mother cell differentiation	1.13E-02
93	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.13E-02
94	GO:0048825: cotyledon development	1.18E-02
95	GO:0009736: cytokinin-activated signaling pathway	1.22E-02
96	GO:0009739: response to gibberellin	1.23E-02
97	GO:0071554: cell wall organization or biogenesis	1.27E-02
98	GO:0009819: drought recovery	1.32E-02
99	GO:0006402: mRNA catabolic process	1.32E-02
100	GO:0010439: regulation of glucosinolate biosynthetic process	1.32E-02
101	GO:0042255: ribosome assembly	1.32E-02
102	GO:0006353: DNA-templated transcription, termination	1.32E-02
103	GO:0009690: cytokinin metabolic process	1.32E-02
104	GO:0009704: de-etiolation	1.32E-02
105	GO:2000070: regulation of response to water deprivation	1.32E-02
106	GO:0010492: maintenance of shoot apical meristem identity	1.32E-02
107	GO:0000105: histidine biosynthetic process	1.32E-02
108	GO:0032502: developmental process	1.35E-02
109	GO:0010497: plasmodesmata-mediated intercellular transport	1.51E-02
110	GO:0032544: plastid translation	1.51E-02
111	GO:0019760: glucosinolate metabolic process	1.54E-02
112	GO:0048367: shoot system development	1.57E-02
113	GO:0051865: protein autoubiquitination	1.72E-02
114	GO:0048507: meristem development	1.72E-02
115	GO:0046916: cellular transition metal ion homeostasis	1.72E-02
116	GO:0048589: developmental growth	1.72E-02
117	GO:0009056: catabolic process	1.72E-02
118	GO:0009740: gibberellic acid mediated signaling pathway	1.77E-02
119	GO:0048364: root development	1.79E-02
120	GO:0009624: response to nematode	1.91E-02
121	GO:0006779: porphyrin-containing compound biosynthetic process	1.94E-02
122	GO:1900865: chloroplast RNA modification	1.94E-02
123	GO:0006298: mismatch repair	2.16E-02
124	GO:0016441: posttranscriptional gene silencing	2.16E-02
125	GO:0006949: syncytium formation	2.16E-02
126	GO:0010192: mucilage biosynthetic process	2.16E-02
127	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.16E-02
128	GO:0009641: shade avoidance	2.16E-02
129	GO:0015995: chlorophyll biosynthetic process	2.17E-02
130	GO:0048573: photoperiodism, flowering	2.17E-02
131	GO:0009682: induced systemic resistance	2.40E-02
132	GO:0008285: negative regulation of cell proliferation	2.40E-02
133	GO:0009750: response to fructose	2.40E-02
134	GO:0048765: root hair cell differentiation	2.40E-02
135	GO:0009817: defense response to fungus, incompatible interaction	2.41E-02
136	GO:0000160: phosphorelay signal transduction system	2.53E-02
137	GO:0010311: lateral root formation	2.53E-02
138	GO:0009832: plant-type cell wall biogenesis	2.53E-02
139	GO:0006790: sulfur compound metabolic process	2.64E-02
140	GO:0012501: programmed cell death	2.64E-02
141	GO:0005983: starch catabolic process	2.64E-02
142	GO:0010152: pollen maturation	2.64E-02
143	GO:0045037: protein import into chloroplast stroma	2.64E-02
144	GO:0010582: floral meristem determinacy	2.64E-02
145	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.64E-02
146	GO:0006811: ion transport	2.65E-02
147	GO:0010588: cotyledon vascular tissue pattern formation	2.90E-02
148	GO:0030048: actin filament-based movement	2.90E-02
149	GO:0010102: lateral root morphogenesis	2.90E-02
150	GO:0010628: positive regulation of gene expression	2.90E-02
151	GO:2000028: regulation of photoperiodism, flowering	2.90E-02
152	GO:0009867: jasmonic acid mediated signaling pathway	3.05E-02
153	GO:0010540: basipetal auxin transport	3.16E-02
154	GO:0006302: double-strand break repair	3.16E-02
155	GO:0048768: root hair cell tip growth	3.16E-02
156	GO:0048467: gynoecium development	3.16E-02
157	GO:0009933: meristem structural organization	3.16E-02
158	GO:0010207: photosystem II assembly	3.16E-02
159	GO:0010223: secondary shoot formation	3.16E-02
160	GO:0009793: embryo development ending in seed dormancy	3.25E-02
161	GO:0090351: seedling development	3.43E-02
162	GO:0046854: phosphatidylinositol phosphorylation	3.43E-02
163	GO:0006631: fatty acid metabolic process	3.63E-02
164	GO:0045892: negative regulation of transcription, DNA-templated	3.68E-02
165	GO:0006636: unsaturated fatty acid biosynthetic process	3.70E-02
166	GO:0009833: plant-type primary cell wall biogenesis	3.70E-02
167	GO:0009744: response to sucrose	3.93E-02
168	GO:0080147: root hair cell development	3.98E-02
169	GO:0051017: actin filament bundle assembly	3.98E-02
170	GO:0005992: trehalose biosynthetic process	3.98E-02
171	GO:0042546: cell wall biogenesis	4.09E-02
172	GO:0019953: sexual reproduction	4.27E-02
173	GO:0006418: tRNA aminoacylation for protein translation	4.27E-02
174	GO:0006874: cellular calcium ion homeostasis	4.27E-02
175	GO:0043622: cortical microtubule organization	4.27E-02
176	GO:0006470: protein dephosphorylation	4.47E-02
177	GO:0010431: seed maturation	4.57E-02
178	GO:0051321: meiotic cell cycle	4.57E-02
179	GO:0016114: terpenoid biosynthetic process	4.57E-02
180	GO:0003333: amino acid transmembrane transport	4.57E-02
181	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.87E-02
182	GO:0007005: mitochondrion organization	4.87E-02
183	GO:0009664: plant-type cell wall organization	4.92E-02
184	GO:0051301: cell division	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
5	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0010011: auxin binding	2.41E-04
8	GO:0010012: steroid 22-alpha hydroxylase activity	7.03E-04
9	GO:0000170: sphingosine hydroxylase activity	7.03E-04
10	GO:0000829: inositol heptakisphosphate kinase activity	7.03E-04
11	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	7.03E-04
12	GO:0005227: calcium activated cation channel activity	7.03E-04
13	GO:0000828: inositol hexakisphosphate kinase activity	7.03E-04
14	GO:0004818: glutamate-tRNA ligase activity	7.03E-04
15	GO:0008568: microtubule-severing ATPase activity	7.03E-04
16	GO:0004832: valine-tRNA ligase activity	7.03E-04
17	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	7.03E-04
18	GO:0010347: L-galactose-1-phosphate phosphatase activity	7.03E-04
19	GO:0004871: signal transducer activity	1.15E-03
20	GO:0010296: prenylcysteine methylesterase activity	1.52E-03
21	GO:0016415: octanoyltransferase activity	1.52E-03
22	GO:0052832: inositol monophosphate 3-phosphatase activity	1.52E-03
23	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.52E-03
24	GO:0004109: coproporphyrinogen oxidase activity	1.52E-03
25	GO:0008805: carbon-monoxide oxygenase activity	1.52E-03
26	GO:0042284: sphingolipid delta-4 desaturase activity	1.52E-03
27	GO:0008934: inositol monophosphate 1-phosphatase activity	1.52E-03
28	GO:0052833: inositol monophosphate 4-phosphatase activity	1.52E-03
29	GO:0019156: isoamylase activity	1.52E-03
30	GO:0009884: cytokinin receptor activity	1.52E-03
31	GO:0017022: myosin binding	1.52E-03
32	GO:0017118: lipoyltransferase activity	1.52E-03
33	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.52E-03
34	GO:0005034: osmosensor activity	2.50E-03
35	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.50E-03
36	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.50E-03
37	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.73E-03
38	GO:0045544: gibberellin 20-oxidase activity	3.64E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	3.64E-03
40	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.64E-03
41	GO:0080031: methyl salicylate esterase activity	3.64E-03
42	GO:0043565: sequence-specific DNA binding	3.90E-03
43	GO:0004722: protein serine/threonine phosphatase activity	4.24E-03
44	GO:0003779: actin binding	4.30E-03
45	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	4.92E-03
46	GO:0010328: auxin influx transmembrane transporter activity	4.92E-03
47	GO:0019199: transmembrane receptor protein kinase activity	4.92E-03
48	GO:0004930: G-protein coupled receptor activity	4.92E-03
49	GO:0005345: purine nucleobase transmembrane transporter activity	5.62E-03
50	GO:0008725: DNA-3-methyladenine glycosylase activity	6.33E-03
51	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	6.33E-03
52	GO:0004674: protein serine/threonine kinase activity	7.06E-03
53	GO:0030983: mismatched DNA binding	7.86E-03
54	GO:0080030: methyl indole-3-acetate esterase activity	7.86E-03
55	GO:0004709: MAP kinase kinase kinase activity	7.86E-03
56	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	7.86E-03
57	GO:0030332: cyclin binding	7.86E-03
58	GO:0004556: alpha-amylase activity	7.86E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.51E-03
60	GO:0016832: aldehyde-lyase activity	9.51E-03
61	GO:0019900: kinase binding	9.51E-03
62	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.02E-02
63	GO:0003724: RNA helicase activity	1.51E-02
64	GO:0046914: transition metal ion binding	1.51E-02
65	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.51E-02
66	GO:0016759: cellulose synthase activity	1.54E-02
67	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.72E-02
68	GO:0016413: O-acetyltransferase activity	1.74E-02
69	GO:0009055: electron carrier activity	1.88E-02
70	GO:0004673: protein histidine kinase activity	2.16E-02
71	GO:0004805: trehalose-phosphatase activity	2.16E-02
72	GO:0005096: GTPase activator activity	2.53E-02
73	GO:0000049: tRNA binding	2.64E-02
74	GO:0000155: phosphorelay sensor kinase activity	2.90E-02
75	GO:0003725: double-stranded RNA binding	2.90E-02
76	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.99E-02
77	GO:0003774: motor activity	3.16E-02
78	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.33E-02
79	GO:0003712: transcription cofactor activity	3.43E-02
80	GO:0005217: intracellular ligand-gated ion channel activity	3.43E-02
81	GO:0004970: ionotropic glutamate receptor activity	3.43E-02
82	GO:0004190: aspartic-type endopeptidase activity	3.43E-02
83	GO:0016301: kinase activity	3.95E-02
84	GO:0031418: L-ascorbic acid binding	3.98E-02
85	GO:0008134: transcription factor binding	3.98E-02
86	GO:0043621: protein self-association	4.25E-02
87	GO:0043424: protein histidine kinase binding	4.27E-02
88	GO:0015079: potassium ion transmembrane transporter activity	4.27E-02
89	GO:0008408: 3'-5' exonuclease activity	4.57E-02
90	GO:0010333: terpene synthase activity	4.57E-02
91	GO:0033612: receptor serine/threonine kinase binding	4.57E-02
92	GO:0003964: RNA-directed DNA polymerase activity	4.57E-02
93	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.87E-02
94	GO:0004842: ubiquitin-protein transferase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0000791: euchromatin	7.03E-04
4	GO:0009986: cell surface	8.51E-04
5	GO:0009569: chloroplast starch grain	1.52E-03
6	GO:0030870: Mre11 complex	1.52E-03
7	GO:0030139: endocytic vesicle	2.50E-03
8	GO:0009531: secondary cell wall	3.64E-03
9	GO:0032585: multivesicular body membrane	3.64E-03
10	GO:0000795: synaptonemal complex	6.33E-03
11	GO:0015629: actin cytoskeleton	7.40E-03
12	GO:0005886: plasma membrane	1.42E-02
13	GO:0010494: cytoplasmic stress granule	1.72E-02
14	GO:0016459: myosin complex	2.16E-02
15	GO:0009508: plastid chromosome	2.90E-02
16	GO:0030095: chloroplast photosystem II	3.16E-02
17	GO:0005875: microtubule associated complex	3.70E-02
18	GO:0090406: pollen tube	3.93E-02
19	GO:0009654: photosystem II oxygen evolving complex	4.27E-02
20	GO:0009532: plastid stroma	4.57E-02