GO Enrichment Analysis of Co-expressed Genes with
AT4G28050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 4 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 5 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 4.31E-05 |
| 6 | GO:0006096: glycolytic process | 9.18E-05 |
| 7 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 1.84E-04 |
| 8 | GO:0009226: nucleotide-sugar biosynthetic process | 2.70E-04 |
| 9 | GO:2001141: regulation of RNA biosynthetic process | 2.70E-04 |
| 10 | GO:0031122: cytoplasmic microtubule organization | 3.64E-04 |
| 11 | GO:0006109: regulation of carbohydrate metabolic process | 3.64E-04 |
| 12 | GO:0010027: thylakoid membrane organization | 3.84E-04 |
| 13 | GO:0045038: protein import into chloroplast thylakoid membrane | 4.63E-04 |
| 14 | GO:0016123: xanthophyll biosynthetic process | 4.63E-04 |
| 15 | GO:0006655: phosphatidylglycerol biosynthetic process | 5.67E-04 |
| 16 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 5.67E-04 |
| 17 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 5.67E-04 |
| 18 | GO:0006555: methionine metabolic process | 5.67E-04 |
| 19 | GO:0010189: vitamin E biosynthetic process | 6.76E-04 |
| 20 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 7.90E-04 |
| 21 | GO:0006605: protein targeting | 9.08E-04 |
| 22 | GO:0010492: maintenance of shoot apical meristem identity | 9.08E-04 |
| 23 | GO:0071482: cellular response to light stimulus | 1.03E-03 |
| 24 | GO:0010206: photosystem II repair | 1.16E-03 |
| 25 | GO:0000373: Group II intron splicing | 1.16E-03 |
| 26 | GO:0048507: meristem development | 1.16E-03 |
| 27 | GO:0035999: tetrahydrofolate interconversion | 1.29E-03 |
| 28 | GO:0009086: methionine biosynthetic process | 1.29E-03 |
| 29 | GO:0043069: negative regulation of programmed cell death | 1.43E-03 |
| 30 | GO:0019538: protein metabolic process | 1.43E-03 |
| 31 | GO:0043085: positive regulation of catalytic activity | 1.57E-03 |
| 32 | GO:0006352: DNA-templated transcription, initiation | 1.57E-03 |
| 33 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.57E-03 |
| 34 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.72E-03 |
| 35 | GO:0006006: glucose metabolic process | 1.87E-03 |
| 36 | GO:0010207: photosystem II assembly | 2.03E-03 |
| 37 | GO:0019253: reductive pentose-phosphate cycle | 2.03E-03 |
| 38 | GO:0008299: isoprenoid biosynthetic process | 2.70E-03 |
| 39 | GO:0010431: seed maturation | 2.88E-03 |
| 40 | GO:0006730: one-carbon metabolic process | 3.06E-03 |
| 41 | GO:0009306: protein secretion | 3.43E-03 |
| 42 | GO:0019722: calcium-mediated signaling | 3.43E-03 |
| 43 | GO:0009561: megagametogenesis | 3.43E-03 |
| 44 | GO:0016117: carotenoid biosynthetic process | 3.63E-03 |
| 45 | GO:0006662: glycerol ether metabolic process | 4.02E-03 |
| 46 | GO:0048868: pollen tube development | 4.02E-03 |
| 47 | GO:0045489: pectin biosynthetic process | 4.02E-03 |
| 48 | GO:0008654: phospholipid biosynthetic process | 4.43E-03 |
| 49 | GO:0007267: cell-cell signaling | 5.52E-03 |
| 50 | GO:0016126: sterol biosynthetic process | 5.98E-03 |
| 51 | GO:0016311: dephosphorylation | 6.94E-03 |
| 52 | GO:0055114: oxidation-reduction process | 7.39E-03 |
| 53 | GO:0006499: N-terminal protein myristoylation | 7.69E-03 |
| 54 | GO:0009637: response to blue light | 8.47E-03 |
| 55 | GO:0034599: cellular response to oxidative stress | 8.74E-03 |
| 56 | GO:0006631: fatty acid metabolic process | 9.56E-03 |
| 57 | GO:0010114: response to red light | 1.01E-02 |
| 58 | GO:0009744: response to sucrose | 1.01E-02 |
| 59 | GO:0042546: cell wall biogenesis | 1.04E-02 |
| 60 | GO:0006855: drug transmembrane transport | 1.13E-02 |
| 61 | GO:0043086: negative regulation of catalytic activity | 1.40E-02 |
| 62 | GO:0006633: fatty acid biosynthetic process | 2.21E-02 |
| 63 | GO:0006470: protein dephosphorylation | 2.60E-02 |
| 64 | GO:0009658: chloroplast organization | 3.22E-02 |
| 65 | GO:0009409: response to cold | 3.46E-02 |
| 66 | GO:0046686: response to cadmium ion | 3.97E-02 |
| 67 | GO:0045454: cell redox homeostasis | 4.27E-02 |
| 68 | GO:0006629: lipid metabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 4 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 6 | GO:0008568: microtubule-severing ATPase activity | 4.31E-05 |
| 7 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 4.31E-05 |
| 8 | GO:0080132: fatty acid alpha-hydroxylase activity | 4.31E-05 |
| 9 | GO:0004802: transketolase activity | 1.07E-04 |
| 10 | GO:0010291: carotene beta-ring hydroxylase activity | 1.07E-04 |
| 11 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.07E-04 |
| 12 | GO:0048531: beta-1,3-galactosyltransferase activity | 1.07E-04 |
| 13 | GO:0070402: NADPH binding | 1.84E-04 |
| 14 | GO:0000254: C-4 methylsterol oxidase activity | 2.70E-04 |
| 15 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 3.64E-04 |
| 16 | GO:0001053: plastid sigma factor activity | 3.64E-04 |
| 17 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 3.64E-04 |
| 18 | GO:0016987: sigma factor activity | 3.64E-04 |
| 19 | GO:0004462: lactoylglutathione lyase activity | 5.67E-04 |
| 20 | GO:0004605: phosphatidate cytidylyltransferase activity | 5.67E-04 |
| 21 | GO:0004017: adenylate kinase activity | 6.76E-04 |
| 22 | GO:0008312: 7S RNA binding | 9.08E-04 |
| 23 | GO:0030955: potassium ion binding | 1.29E-03 |
| 24 | GO:0004743: pyruvate kinase activity | 1.29E-03 |
| 25 | GO:0016874: ligase activity | 1.40E-03 |
| 26 | GO:0008047: enzyme activator activity | 1.43E-03 |
| 27 | GO:0031072: heat shock protein binding | 1.87E-03 |
| 28 | GO:0004857: enzyme inhibitor activity | 2.52E-03 |
| 29 | GO:0005528: FK506 binding | 2.52E-03 |
| 30 | GO:0047134: protein-disulfide reductase activity | 3.63E-03 |
| 31 | GO:0004791: thioredoxin-disulfide reductase activity | 4.23E-03 |
| 32 | GO:0016853: isomerase activity | 4.23E-03 |
| 33 | GO:0005506: iron ion binding | 4.70E-03 |
| 34 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 5.07E-03 |
| 35 | GO:0004721: phosphoprotein phosphatase activity | 6.69E-03 |
| 36 | GO:0008236: serine-type peptidase activity | 6.94E-03 |
| 37 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.19E-03 |
| 38 | GO:0015238: drug transmembrane transporter activity | 7.43E-03 |
| 39 | GO:0030145: manganese ion binding | 7.95E-03 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.13E-02 |
| 41 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.25E-02 |
| 42 | GO:0051082: unfolded protein binding | 1.60E-02 |
| 43 | GO:0015035: protein disulfide oxidoreductase activity | 1.64E-02 |
| 44 | GO:0016746: transferase activity, transferring acyl groups | 1.64E-02 |
| 45 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.91E-02 |
| 46 | GO:0016829: lyase activity | 1.99E-02 |
| 47 | GO:0004252: serine-type endopeptidase activity | 2.02E-02 |
| 48 | GO:0015297: antiporter activity | 2.29E-02 |
| 49 | GO:0003824: catalytic activity | 2.81E-02 |
| 50 | GO:0000287: magnesium ion binding | 3.18E-02 |
| 51 | GO:0016491: oxidoreductase activity | 3.36E-02 |
| 52 | GO:0003729: mRNA binding | 3.80E-02 |
| 53 | GO:0004871: signal transducer activity | 4.41E-02 |
| 54 | GO:0004722: protein serine/threonine phosphatase activity | 4.56E-02 |
| 55 | GO:0003924: GTPase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.39E-14 |
| 2 | GO:0009570: chloroplast stroma | 5.19E-08 |
| 3 | GO:0031969: chloroplast membrane | 2.68E-06 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.23E-05 |
| 5 | GO:0009579: thylakoid | 4.29E-05 |
| 6 | GO:0009941: chloroplast envelope | 1.05E-04 |
| 7 | GO:0080085: signal recognition particle, chloroplast targeting | 1.07E-04 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.66E-04 |
| 9 | GO:0010319: stromule | 3.42E-04 |
| 10 | GO:0031977: thylakoid lumen | 7.37E-04 |
| 11 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.03E-03 |
| 12 | GO:0000311: plastid large ribosomal subunit | 1.72E-03 |
| 13 | GO:0030529: intracellular ribonucleoprotein complex | 5.98E-03 |
| 14 | GO:0015934: large ribosomal subunit | 7.95E-03 |
| 15 | GO:0009534: chloroplast thylakoid | 1.52E-02 |
| 16 | GO:0010287: plastoglobule | 1.81E-02 |
| 17 | GO:0048046: apoplast | 2.46E-02 |
| 18 | GO:0005789: endoplasmic reticulum membrane | 3.90E-02 |