co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28025

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042820: vitamin B6 catabolic process	0.00E+00
2	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
3	GO:0008298: intracellular mRNA localization	0.00E+00
4	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
5	GO:0043488: regulation of mRNA stability	0.00E+00
6	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0017038: protein import	0.00E+00
11	GO:0005977: glycogen metabolic process	4.89E-06
12	GO:0010021: amylopectin biosynthetic process	2.11E-05
13	GO:0019252: starch biosynthetic process	1.09E-04
14	GO:0009658: chloroplast organization	1.15E-04
15	GO:0006659: phosphatidylserine biosynthetic process	1.64E-04
16	GO:0070574: cadmium ion transmembrane transport	1.64E-04
17	GO:0051247: positive regulation of protein metabolic process	1.64E-04
18	GO:2000905: negative regulation of starch metabolic process	1.64E-04
19	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.64E-04
20	GO:0000476: maturation of 4.5S rRNA	1.64E-04
21	GO:0009443: pyridoxal 5'-phosphate salvage	1.64E-04
22	GO:0000967: rRNA 5'-end processing	1.64E-04
23	GO:0018026: peptidyl-lysine monomethylation	3.73E-04
24	GO:1900033: negative regulation of trichome patterning	3.73E-04
25	GO:1904143: positive regulation of carotenoid biosynthetic process	3.73E-04
26	GO:0010024: phytochromobilin biosynthetic process	3.73E-04
27	GO:0034470: ncRNA processing	3.73E-04
28	GO:0006760: folic acid-containing compound metabolic process	6.11E-04
29	GO:0006788: heme oxidation	6.11E-04
30	GO:0048586: regulation of long-day photoperiodism, flowering	6.11E-04
31	GO:0006954: inflammatory response	6.11E-04
32	GO:0006168: adenine salvage	8.73E-04
33	GO:0090308: regulation of methylation-dependent chromatin silencing	8.73E-04
34	GO:0006166: purine ribonucleoside salvage	8.73E-04
35	GO:0051016: barbed-end actin filament capping	8.73E-04
36	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.73E-04
37	GO:0006021: inositol biosynthetic process	1.16E-03
38	GO:0048629: trichome patterning	1.16E-03
39	GO:0010109: regulation of photosynthesis	1.16E-03
40	GO:0009765: photosynthesis, light harvesting	1.16E-03
41	GO:2000306: positive regulation of photomorphogenesis	1.16E-03
42	GO:0046656: folic acid biosynthetic process	1.16E-03
43	GO:0009646: response to absence of light	1.30E-03
44	GO:0008654: phospholipid biosynthetic process	1.40E-03
45	GO:0044209: AMP salvage	1.47E-03
46	GO:0080110: sporopollenin biosynthetic process	1.47E-03
47	GO:0032502: developmental process	1.59E-03
48	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.80E-03
49	GO:0000741: karyogamy	1.80E-03
50	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.80E-03
51	GO:0048280: vesicle fusion with Golgi apparatus	2.17E-03
52	GO:0046654: tetrahydrofolate biosynthetic process	2.17E-03
53	GO:0010189: vitamin E biosynthetic process	2.17E-03
54	GO:0009955: adaxial/abaxial pattern specification	2.17E-03
55	GO:1901259: chloroplast rRNA processing	2.17E-03
56	GO:1900056: negative regulation of leaf senescence	2.55E-03
57	GO:0051693: actin filament capping	2.55E-03
58	GO:0018298: protein-chromophore linkage	2.78E-03
59	GO:0009690: cytokinin metabolic process	2.95E-03
60	GO:0006605: protein targeting	2.95E-03
61	GO:0010078: maintenance of root meristem identity	2.95E-03
62	GO:0006875: cellular metal ion homeostasis	2.95E-03
63	GO:0043562: cellular response to nitrogen levels	3.37E-03
64	GO:0071482: cellular response to light stimulus	3.37E-03
65	GO:0046685: response to arsenic-containing substance	3.81E-03
66	GO:0009821: alkaloid biosynthetic process	3.81E-03
67	GO:0009638: phototropism	4.27E-03
68	GO:0010380: regulation of chlorophyll biosynthetic process	4.27E-03
69	GO:0006896: Golgi to vacuole transport	4.75E-03
70	GO:0010216: maintenance of DNA methylation	5.25E-03
71	GO:0009684: indoleacetic acid biosynthetic process	5.25E-03
72	GO:0009773: photosynthetic electron transport in photosystem I	5.25E-03
73	GO:0006415: translational termination	5.25E-03
74	GO:0019684: photosynthesis, light reaction	5.25E-03
75	GO:0009089: lysine biosynthetic process via diaminopimelate	5.25E-03
76	GO:0030036: actin cytoskeleton organization	6.30E-03
77	GO:0010588: cotyledon vascular tissue pattern formation	6.30E-03
78	GO:0055085: transmembrane transport	6.56E-03
79	GO:0015979: photosynthesis	6.70E-03
80	GO:0007015: actin filament organization	6.85E-03
81	GO:0048467: gynoecium development	6.85E-03
82	GO:0019853: L-ascorbic acid biosynthetic process	7.41E-03
83	GO:0080147: root hair cell development	8.59E-03
84	GO:0019915: lipid storage	9.84E-03
85	GO:0006730: one-carbon metabolic process	1.05E-02
86	GO:0006012: galactose metabolic process	1.11E-02
87	GO:0009306: protein secretion	1.18E-02
88	GO:0010584: pollen exine formation	1.18E-02
89	GO:0042147: retrograde transport, endosome to Golgi	1.25E-02
90	GO:0080022: primary root development	1.32E-02
91	GO:0010087: phloem or xylem histogenesis	1.32E-02
92	GO:0006662: glycerol ether metabolic process	1.39E-02
93	GO:0010197: polar nucleus fusion	1.39E-02
94	GO:0009741: response to brassinosteroid	1.39E-02
95	GO:0009958: positive gravitropism	1.39E-02
96	GO:0055072: iron ion homeostasis	1.54E-02
97	GO:0009851: auxin biosynthetic process	1.54E-02
98	GO:0006623: protein targeting to vacuole	1.54E-02
99	GO:0009791: post-embryonic development	1.54E-02
100	GO:0048825: cotyledon development	1.54E-02
101	GO:0006891: intra-Golgi vesicle-mediated transport	1.62E-02
102	GO:0010090: trichome morphogenesis	1.77E-02
103	GO:0009416: response to light stimulus	1.92E-02
104	GO:0010027: thylakoid membrane organization	2.10E-02
105	GO:0009607: response to biotic stimulus	2.19E-02
106	GO:0010029: regulation of seed germination	2.19E-02
107	GO:0006888: ER to Golgi vesicle-mediated transport	2.36E-02
108	GO:0016311: dephosphorylation	2.45E-02
109	GO:0048366: leaf development	2.75E-02
110	GO:0009910: negative regulation of flower development	2.82E-02
111	GO:0048527: lateral root development	2.82E-02
112	GO:0016051: carbohydrate biosynthetic process	3.01E-02
113	GO:0034599: cellular response to oxidative stress	3.10E-02
114	GO:0006839: mitochondrial transport	3.30E-02
115	GO:0030001: metal ion transport	3.30E-02
116	GO:0045454: cell redox homeostasis	3.46E-02
117	GO:0051707: response to other organism	3.60E-02
118	GO:0008283: cell proliferation	3.60E-02
119	GO:0008643: carbohydrate transport	3.81E-02
120	GO:0006855: drug transmembrane transport	4.02E-02
121	GO:0055114: oxidation-reduction process	4.09E-02
122	GO:0009585: red, far-red light phototransduction	4.45E-02
123	GO:0006857: oligopeptide transport	4.67E-02
124	GO:0009909: regulation of flower development	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
4	GO:0019156: isoamylase activity	1.32E-06
5	GO:0043495: protein anchor	2.11E-05
6	GO:0004556: alpha-amylase activity	5.10E-05
7	GO:0019899: enzyme binding	9.52E-05
8	GO:0004033: aldo-keto reductase (NADP) activity	1.23E-04
9	GO:0005080: protein kinase C binding	1.64E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.64E-04
11	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.73E-04
12	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.73E-04
13	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	3.73E-04
14	GO:0102083: 7,8-dihydromonapterin aldolase activity	3.73E-04
15	GO:0004512: inositol-3-phosphate synthase activity	3.73E-04
16	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	3.73E-04
17	GO:0004150: dihydroneopterin aldolase activity	3.73E-04
18	GO:0004751: ribose-5-phosphate isomerase activity	6.11E-04
19	GO:0070402: NADPH binding	6.11E-04
20	GO:0015462: ATPase-coupled protein transmembrane transporter activity	6.11E-04
21	GO:0003913: DNA photolyase activity	6.11E-04
22	GO:0004148: dihydrolipoyl dehydrogenase activity	6.11E-04
23	GO:0005528: FK506 binding	6.27E-04
24	GO:0003999: adenine phosphoribosyltransferase activity	8.73E-04
25	GO:0015086: cadmium ion transmembrane transporter activity	8.73E-04
26	GO:0022891: substrate-specific transmembrane transporter activity	8.97E-04
27	GO:0004392: heme oxygenase (decyclizing) activity	1.16E-03
28	GO:0016279: protein-lysine N-methyltransferase activity	1.16E-03
29	GO:0080032: methyl jasmonate esterase activity	1.16E-03
30	GO:0009011: starch synthase activity	1.16E-03
31	GO:0016846: carbon-sulfur lyase activity	1.47E-03
32	GO:0004462: lactoylglutathione lyase activity	1.80E-03
33	GO:0008200: ion channel inhibitor activity	1.80E-03
34	GO:0004605: phosphatidate cytidylyltransferase activity	1.80E-03
35	GO:0080030: methyl indole-3-acetate esterase activity	1.80E-03
36	GO:0003730: mRNA 3'-UTR binding	2.17E-03
37	GO:0008195: phosphatidate phosphatase activity	2.17E-03
38	GO:0016168: chlorophyll binding	2.26E-03
39	GO:0015103: inorganic anion transmembrane transporter activity	2.55E-03
40	GO:0003993: acid phosphatase activity	3.68E-03
41	GO:0003747: translation release factor activity	3.81E-03
42	GO:0003824: catalytic activity	4.22E-03
43	GO:0016844: strictosidine synthase activity	4.27E-03
44	GO:0015020: glucuronosyltransferase activity	4.75E-03
45	GO:0035091: phosphatidylinositol binding	4.90E-03
46	GO:0008559: xenobiotic-transporting ATPase activity	5.25E-03
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.28E-03
48	GO:0004022: alcohol dehydrogenase (NAD) activity	6.30E-03
49	GO:0003725: double-stranded RNA binding	6.30E-03
50	GO:0008514: organic anion transmembrane transporter activity	1.18E-02
51	GO:0047134: protein-disulfide reductase activity	1.25E-02
52	GO:0008565: protein transporter activity	1.30E-02
53	GO:0003713: transcription coactivator activity	1.39E-02
54	GO:0046873: metal ion transmembrane transporter activity	1.39E-02
55	GO:0004791: thioredoxin-disulfide reductase activity	1.47E-02
56	GO:0050662: coenzyme binding	1.47E-02
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.77E-02
58	GO:0016759: cellulose synthase activity	1.86E-02
59	GO:0042802: identical protein binding	1.92E-02
60	GO:0008375: acetylglucosaminyltransferase activity	2.27E-02
61	GO:0004721: phosphoprotein phosphatase activity	2.36E-02
62	GO:0016788: hydrolase activity, acting on ester bonds	2.38E-02
63	GO:0008270: zinc ion binding	2.56E-02
64	GO:0015238: drug transmembrane transporter activity	2.63E-02
65	GO:0000149: SNARE binding	3.20E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.20E-02
67	GO:0005484: SNAP receptor activity	3.60E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	6.51E-10
3	GO:0009570: chloroplast stroma	2.20E-04
4	GO:0008290: F-actin capping protein complex	3.73E-04
5	GO:0033281: TAT protein transport complex	6.11E-04
6	GO:0042651: thylakoid membrane	6.90E-04
7	GO:0009535: chloroplast thylakoid membrane	1.38E-03
8	GO:0009523: photosystem II	1.40E-03
9	GO:0009543: chloroplast thylakoid lumen	1.65E-03
10	GO:0012507: ER to Golgi transport vesicle membrane	2.95E-03
11	GO:0005720: nuclear heterochromatin	3.81E-03
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.81E-03
13	GO:0031977: thylakoid lumen	4.18E-03
14	GO:0031969: chloroplast membrane	5.66E-03
15	GO:0016021: integral component of membrane	1.76E-02
16	GO:0000325: plant-type vacuole	2.82E-02
17	GO:0031902: late endosome membrane	3.40E-02
18	GO:0031201: SNARE complex	3.40E-02
19	GO:0016020: membrane	4.57E-02