co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27595

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0009733: response to auxin	2.47E-07
8	GO:0009734: auxin-activated signaling pathway	1.32E-05
9	GO:0006351: transcription, DNA-templated	2.06E-05
10	GO:0046620: regulation of organ growth	2.84E-05
11	GO:0009686: gibberellin biosynthetic process	4.31E-05
12	GO:0009926: auxin polar transport	1.12E-04
13	GO:0010583: response to cyclopentenone	1.34E-04
14	GO:0048497: maintenance of floral organ identity	2.15E-04
15	GO:0032958: inositol phosphate biosynthetic process	5.03E-04
16	GO:0010070: zygote asymmetric cell division	5.03E-04
17	GO:0051013: microtubule severing	5.03E-04
18	GO:0034757: negative regulation of iron ion transport	5.03E-04
19	GO:0045786: negative regulation of cell cycle	5.03E-04
20	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.03E-04
21	GO:0006355: regulation of transcription, DNA-templated	5.23E-04
22	GO:0007186: G-protein coupled receptor signaling pathway	7.90E-04
23	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.55E-04
24	GO:0061062: regulation of nematode larval development	1.08E-03
25	GO:0010271: regulation of chlorophyll catabolic process	1.08E-03
26	GO:0001736: establishment of planar polarity	1.08E-03
27	GO:0009786: regulation of asymmetric cell division	1.08E-03
28	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.08E-03
29	GO:0048829: root cap development	1.29E-03
30	GO:0080117: secondary growth	1.77E-03
31	GO:0006518: peptide metabolic process	1.77E-03
32	GO:0071398: cellular response to fatty acid	1.77E-03
33	GO:0048575: short-day photoperiodism, flowering	1.77E-03
34	GO:0090506: axillary shoot meristem initiation	1.77E-03
35	GO:0034090: maintenance of meiotic sister chromatid cohesion	1.77E-03
36	GO:0009887: animal organ morphogenesis	2.20E-03
37	GO:0009825: multidimensional cell growth	2.47E-03
38	GO:0010321: regulation of vegetative phase change	2.57E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	2.57E-03
40	GO:0006020: inositol metabolic process	2.57E-03
41	GO:0007276: gamete generation	2.57E-03
42	GO:0006863: purine nucleobase transport	2.75E-03
43	GO:0042991: transcription factor import into nucleus	3.46E-03
44	GO:0006021: inositol biosynthetic process	3.46E-03
45	GO:0009956: radial pattern formation	3.46E-03
46	GO:0009755: hormone-mediated signaling pathway	3.46E-03
47	GO:0048629: trichome patterning	3.46E-03
48	GO:0040008: regulation of growth	4.43E-03
49	GO:0071215: cellular response to abscisic acid stimulus	4.43E-03
50	GO:0045487: gibberellin catabolic process	4.44E-03
51	GO:0009107: lipoate biosynthetic process	4.44E-03
52	GO:0010438: cellular response to sulfur starvation	4.44E-03
53	GO:0010091: trichome branching	4.82E-03
54	GO:0042127: regulation of cell proliferation	4.82E-03
55	GO:0045892: negative regulation of transcription, DNA-templated	4.86E-03
56	GO:0009913: epidermal cell differentiation	5.50E-03
57	GO:1902456: regulation of stomatal opening	5.50E-03
58	GO:0048831: regulation of shoot system development	5.50E-03
59	GO:0003006: developmental process involved in reproduction	5.50E-03
60	GO:0010942: positive regulation of cell death	5.50E-03
61	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	5.50E-03
62	GO:0010358: leaf shaping	5.50E-03
63	GO:0016554: cytidine to uridine editing	5.50E-03
64	GO:0009739: response to gibberellin	5.65E-03
65	GO:0009416: response to light stimulus	6.02E-03
66	GO:0009958: positive gravitropism	6.10E-03
67	GO:0009741: response to brassinosteroid	6.10E-03
68	GO:0009736: cytokinin-activated signaling pathway	6.33E-03
69	GO:0031930: mitochondria-nucleus signaling pathway	6.63E-03
70	GO:0048509: regulation of meristem development	6.63E-03
71	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	6.63E-03
72	GO:0048825: cotyledon development	7.04E-03
73	GO:0071554: cell wall organization or biogenesis	7.54E-03
74	GO:0000082: G1/S transition of mitotic cell cycle	7.85E-03
75	GO:0010444: guard mother cell differentiation	7.85E-03
76	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	7.85E-03
77	GO:0007050: cell cycle arrest	7.85E-03
78	GO:0016567: protein ubiquitination	7.99E-03
79	GO:0071555: cell wall organization	8.76E-03
80	GO:0042255: ribosome assembly	9.14E-03
81	GO:0006402: mRNA catabolic process	9.14E-03
82	GO:0006353: DNA-templated transcription, termination	9.14E-03
83	GO:0010439: regulation of glucosinolate biosynthetic process	9.14E-03
84	GO:0009704: de-etiolation	9.14E-03
85	GO:2000070: regulation of response to water deprivation	9.14E-03
86	GO:0010492: maintenance of shoot apical meristem identity	9.14E-03
87	GO:0000105: histidine biosynthetic process	9.14E-03
88	GO:0009819: drought recovery	9.14E-03
89	GO:0009567: double fertilization forming a zygote and endosperm	9.16E-03
90	GO:0009740: gibberellic acid mediated signaling pathway	9.20E-03
91	GO:0032544: plastid translation	1.05E-02
92	GO:0006468: protein phosphorylation	1.15E-02
93	GO:0048507: meristem development	1.19E-02
94	GO:0000373: Group II intron splicing	1.19E-02
95	GO:0048589: developmental growth	1.19E-02
96	GO:0009056: catabolic process	1.19E-02
97	GO:0048366: leaf development	1.19E-02
98	GO:0048573: photoperiodism, flowering	1.29E-02
99	GO:1900865: chloroplast RNA modification	1.34E-02
100	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.50E-02
101	GO:0009641: shade avoidance	1.50E-02
102	GO:0006949: syncytium formation	1.50E-02
103	GO:0010192: mucilage biosynthetic process	1.50E-02
104	GO:0010629: negative regulation of gene expression	1.50E-02
105	GO:0006782: protoporphyrinogen IX biosynthetic process	1.50E-02
106	GO:0010311: lateral root formation	1.51E-02
107	GO:0009832: plant-type cell wall biogenesis	1.51E-02
108	GO:0000160: phosphorelay signal transduction system	1.51E-02
109	GO:0006811: ion transport	1.58E-02
110	GO:0048765: root hair cell differentiation	1.66E-02
111	GO:0009682: induced systemic resistance	1.66E-02
112	GO:0008285: negative regulation of cell proliferation	1.66E-02
113	GO:0006865: amino acid transport	1.74E-02
114	GO:0009867: jasmonic acid mediated signaling pathway	1.82E-02
115	GO:0045037: protein import into chloroplast stroma	1.83E-02
116	GO:0010582: floral meristem determinacy	1.83E-02
117	GO:0010152: pollen maturation	1.83E-02
118	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.83E-02
119	GO:0006790: sulfur compound metabolic process	1.83E-02
120	GO:0012501: programmed cell death	1.83E-02
121	GO:0005983: starch catabolic process	1.83E-02
122	GO:0010102: lateral root morphogenesis	2.01E-02
123	GO:0010628: positive regulation of gene expression	2.01E-02
124	GO:2000028: regulation of photoperiodism, flowering	2.01E-02
125	GO:0051301: cell division	2.13E-02
126	GO:0009933: meristem structural organization	2.18E-02
127	GO:0010207: photosystem II assembly	2.18E-02
128	GO:0010223: secondary shoot formation	2.18E-02
129	GO:0010540: basipetal auxin transport	2.18E-02
130	GO:0006302: double-strand break repair	2.18E-02
131	GO:0048768: root hair cell tip growth	2.18E-02
132	GO:0048467: gynoecium development	2.18E-02
133	GO:0090351: seedling development	2.37E-02
134	GO:0046854: phosphatidylinositol phosphorylation	2.37E-02
135	GO:0042546: cell wall biogenesis	2.45E-02
136	GO:0048364: root development	2.45E-02
137	GO:0009833: plant-type primary cell wall biogenesis	2.56E-02
138	GO:0009636: response to toxic substance	2.64E-02
139	GO:0009664: plant-type cell wall organization	2.95E-02
140	GO:0019953: sexual reproduction	2.96E-02
141	GO:0006874: cellular calcium ion homeostasis	2.96E-02
142	GO:0043622: cortical microtubule organization	2.96E-02
143	GO:0051321: meiotic cell cycle	3.16E-02
144	GO:0016114: terpenoid biosynthetic process	3.16E-02
145	GO:0003333: amino acid transmembrane transport	3.16E-02
146	GO:0010431: seed maturation	3.16E-02
147	GO:0009826: unidimensional cell growth	3.29E-02
148	GO:0009658: chloroplast organization	3.45E-02
149	GO:0009909: regulation of flower development	3.51E-02
150	GO:0010082: regulation of root meristem growth	3.59E-02
151	GO:0001944: vasculature development	3.59E-02
152	GO:0009625: response to insect	3.59E-02
153	GO:0009693: ethylene biosynthetic process	3.59E-02
154	GO:0048443: stamen development	3.81E-02
155	GO:0006284: base-excision repair	3.81E-02
156	GO:0070417: cellular response to cold	4.04E-02
157	GO:0000271: polysaccharide biosynthetic process	4.27E-02
158	GO:0000413: protein peptidyl-prolyl isomerization	4.27E-02
159	GO:0010087: phloem or xylem histogenesis	4.27E-02
160	GO:0010118: stomatal movement	4.27E-02
161	GO:0000226: microtubule cytoskeleton organization	4.27E-02
162	GO:0010305: leaf vascular tissue pattern formation	4.50E-02
163	GO:0010182: sugar mediated signaling pathway	4.50E-02
164	GO:0010268: brassinosteroid homeostasis	4.50E-02
165	GO:0009624: response to nematode	4.50E-02
166	GO:0045489: pectin biosynthetic process	4.50E-02
167	GO:0009908: flower development	4.58E-02
168	GO:0007018: microtubule-based movement	4.73E-02
169	GO:0051726: regulation of cell cycle	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
5	GO:0009899: ent-kaurene synthase activity	0.00E+00
6	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
7	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.32E-05
8	GO:0010011: auxin binding	1.40E-04
9	GO:0008568: microtubule-severing ATPase activity	5.03E-04
10	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	5.03E-04
11	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.03E-04
12	GO:0010012: steroid 22-alpha hydroxylase activity	5.03E-04
13	GO:0000829: inositol heptakisphosphate kinase activity	5.03E-04
14	GO:0005227: calcium activated cation channel activity	5.03E-04
15	GO:0000828: inositol hexakisphosphate kinase activity	5.03E-04
16	GO:0043565: sequence-specific DNA binding	6.05E-04
17	GO:0050736: O-malonyltransferase activity	1.08E-03
18	GO:0009884: cytokinin receptor activity	1.08E-03
19	GO:0019156: isoamylase activity	1.08E-03
20	GO:0017022: myosin binding	1.08E-03
21	GO:0017118: lipoyltransferase activity	1.08E-03
22	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.08E-03
23	GO:0010296: prenylcysteine methylesterase activity	1.08E-03
24	GO:0016415: octanoyltransferase activity	1.08E-03
25	GO:0052832: inositol monophosphate 3-phosphatase activity	1.08E-03
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.08E-03
27	GO:0004109: coproporphyrinogen oxidase activity	1.08E-03
28	GO:0008805: carbon-monoxide oxygenase activity	1.08E-03
29	GO:0008934: inositol monophosphate 1-phosphatase activity	1.08E-03
30	GO:0052833: inositol monophosphate 4-phosphatase activity	1.08E-03
31	GO:0004871: signal transducer activity	1.40E-03
32	GO:0005034: osmosensor activity	1.77E-03
33	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.77E-03
34	GO:0045544: gibberellin 20-oxidase activity	2.57E-03
35	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.57E-03
36	GO:0005345: purine nucleobase transmembrane transporter activity	3.37E-03
37	GO:0004930: G-protein coupled receptor activity	3.46E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.46E-03
39	GO:0010328: auxin influx transmembrane transporter activity	3.46E-03
40	GO:0019199: transmembrane receptor protein kinase activity	3.46E-03
41	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.44E-03
42	GO:0008725: DNA-3-methyladenine glycosylase activity	4.44E-03
43	GO:0030332: cyclin binding	5.50E-03
44	GO:0004556: alpha-amylase activity	5.50E-03
45	GO:0004709: MAP kinase kinase kinase activity	5.50E-03
46	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	5.50E-03
47	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	6.10E-03
48	GO:0019900: kinase binding	6.63E-03
49	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.63E-03
50	GO:0016832: aldehyde-lyase activity	6.63E-03
51	GO:0003677: DNA binding	7.10E-03
52	GO:0016759: cellulose synthase activity	9.16E-03
53	GO:0016413: O-acetyltransferase activity	1.03E-02
54	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.19E-02
55	GO:0004674: protein serine/threonine kinase activity	1.33E-02
56	GO:0004673: protein histidine kinase activity	1.50E-02
57	GO:0004222: metalloendopeptidase activity	1.58E-02
58	GO:0042803: protein homodimerization activity	1.81E-02
59	GO:0003725: double-stranded RNA binding	2.01E-02
60	GO:0000155: phosphorelay sensor kinase activity	2.01E-02
61	GO:0008061: chitin binding	2.37E-02
62	GO:0005217: intracellular ligand-gated ion channel activity	2.37E-02
63	GO:0003712: transcription cofactor activity	2.37E-02
64	GO:0004970: ionotropic glutamate receptor activity	2.37E-02
65	GO:0004190: aspartic-type endopeptidase activity	2.37E-02
66	GO:0009055: electron carrier activity	2.56E-02
67	GO:0042802: identical protein binding	2.70E-02
68	GO:0008134: transcription factor binding	2.76E-02
69	GO:0031418: L-ascorbic acid binding	2.76E-02
70	GO:0005515: protein binding	2.78E-02
71	GO:0043424: protein histidine kinase binding	2.96E-02
72	GO:0033612: receptor serine/threonine kinase binding	3.16E-02
73	GO:0003964: RNA-directed DNA polymerase activity	3.16E-02
74	GO:0008408: 3'-5' exonuclease activity	3.16E-02
75	GO:0010333: terpene synthase activity	3.16E-02
76	GO:0003690: double-stranded DNA binding	3.28E-02
77	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.38E-02
78	GO:0015171: amino acid transmembrane transporter activity	3.51E-02
79	GO:0016760: cellulose synthase (UDP-forming) activity	3.59E-02
80	GO:0016301: kinase activity	3.59E-02
81	GO:0003727: single-stranded RNA binding	3.81E-02
82	GO:0003779: actin binding	4.37E-02
83	GO:0005199: structural constituent of cell wall	4.50E-02
84	GO:0015035: protein disulfide oxidoreductase activity	4.63E-02
85	GO:0016853: isomerase activity	4.73E-02
86	GO:0004672: protein kinase activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0000791: euchromatin	5.03E-04
4	GO:0009986: cell surface	5.20E-04
5	GO:0030870: Mre11 complex	1.08E-03
6	GO:0009569: chloroplast starch grain	1.08E-03
7	GO:0030139: endocytic vesicle	1.77E-03
8	GO:0009531: secondary cell wall	2.57E-03
9	GO:0032585: multivesicular body membrane	2.57E-03
10	GO:0000795: synaptonemal complex	4.44E-03
11	GO:0005886: plasma membrane	1.83E-02
12	GO:0030095: chloroplast photosystem II	2.18E-02
13	GO:0090406: pollen tube	2.35E-02
14	GO:0009654: photosystem II oxygen evolving complex	2.96E-02
15	GO:0009532: plastid stroma	3.16E-02
16	GO:0005634: nucleus	3.49E-02
17	GO:0005871: kinesin complex	4.04E-02
18	GO:0005874: microtubule	4.30E-02
19	GO:0019898: extrinsic component of membrane	4.97E-02
20	GO:0009504: cell plate	4.97E-02