Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G27030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016118: carotenoid catabolic process0.00E+00
2GO:0009661: chromoplast organization0.00E+00
3GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
4GO:1905157: positive regulation of photosynthesis0.00E+00
5GO:0015843: methylammonium transport0.00E+00
6GO:1902171: regulation of tocopherol cyclase activity0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0033494: ferulate metabolic process0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I3.57E-08
12GO:0015995: chlorophyll biosynthetic process7.45E-07
13GO:0015979: photosynthesis2.77E-06
14GO:0010207: photosystem II assembly5.40E-06
15GO:0032544: plastid translation2.57E-05
16GO:0090391: granum assembly2.69E-05
17GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.86E-05
18GO:0015994: chlorophyll metabolic process1.03E-04
19GO:0010143: cutin biosynthetic process1.37E-04
20GO:0042549: photosystem II stabilization2.27E-04
21GO:0010190: cytochrome b6f complex assembly2.27E-04
22GO:0009768: photosynthesis, light harvesting in photosystem I2.53E-04
23GO:1901259: chloroplast rRNA processing3.06E-04
24GO:0010196: nonphotochemical quenching3.95E-04
25GO:0015671: oxygen transport4.18E-04
26GO:0043953: protein transport by the Tat complex4.18E-04
27GO:0071277: cellular response to calcium ion4.18E-04
28GO:0065002: intracellular protein transmembrane transport4.18E-04
29GO:0080093: regulation of photorespiration4.18E-04
30GO:0031998: regulation of fatty acid beta-oxidation4.18E-04
31GO:0010028: xanthophyll cycle4.18E-04
32GO:0034337: RNA folding4.18E-04
33GO:0000476: maturation of 4.5S rRNA4.18E-04
34GO:0000967: rRNA 5'-end processing4.18E-04
35GO:0046467: membrane lipid biosynthetic process4.18E-04
36GO:0005980: glycogen catabolic process4.18E-04
37GO:0055114: oxidation-reduction process4.38E-04
38GO:0006810: transport4.92E-04
39GO:0050821: protein stabilization4.94E-04
40GO:0010114: response to red light4.98E-04
41GO:0009657: plastid organization6.03E-04
42GO:0019252: starch biosynthetic process6.66E-04
43GO:0006098: pentose-phosphate shunt7.22E-04
44GO:0005982: starch metabolic process8.52E-04
45GO:0060151: peroxisome localization9.05E-04
46GO:0006898: receptor-mediated endocytosis9.05E-04
47GO:0034755: iron ion transmembrane transport9.05E-04
48GO:0071457: cellular response to ozone9.05E-04
49GO:1904143: positive regulation of carotenoid biosynthetic process9.05E-04
50GO:0016122: xanthophyll metabolic process9.05E-04
51GO:0016121: carotene catabolic process9.05E-04
52GO:0034470: ncRNA processing9.05E-04
53GO:0051645: Golgi localization9.05E-04
54GO:0080029: cellular response to boron-containing substance levels9.05E-04
55GO:0016124: xanthophyll catabolic process9.05E-04
56GO:0032259: methylation1.02E-03
57GO:0010027: thylakoid membrane organization1.15E-03
58GO:0009658: chloroplast organization1.43E-03
59GO:0090436: leaf pavement cell development1.47E-03
60GO:0051646: mitochondrion localization1.47E-03
61GO:0005977: glycogen metabolic process1.47E-03
62GO:0006094: gluconeogenesis1.48E-03
63GO:0030048: actin filament-based movement1.48E-03
64GO:0018298: protein-chromophore linkage1.61E-03
65GO:0010218: response to far red light1.83E-03
66GO:0010025: wax biosynthetic process2.09E-03
67GO:0046713: borate transport2.13E-03
68GO:1902358: sulfate transmembrane transport2.13E-03
69GO:0006020: inositol metabolic process2.13E-03
70GO:0071484: cellular response to light intensity2.13E-03
71GO:0009152: purine ribonucleotide biosynthetic process2.13E-03
72GO:0046653: tetrahydrofolate metabolic process2.13E-03
73GO:0009052: pentose-phosphate shunt, non-oxidative branch2.13E-03
74GO:0015696: ammonium transport2.13E-03
75GO:0009637: response to blue light2.19E-03
76GO:0034599: cellular response to oxidative stress2.31E-03
77GO:0006631: fatty acid metabolic process2.72E-03
78GO:0071483: cellular response to blue light2.86E-03
79GO:0010021: amylopectin biosynthetic process2.86E-03
80GO:0071486: cellular response to high light intensity2.86E-03
81GO:0009765: photosynthesis, light harvesting2.86E-03
82GO:0045727: positive regulation of translation2.86E-03
83GO:0072488: ammonium transmembrane transport2.86E-03
84GO:0006021: inositol biosynthetic process2.86E-03
85GO:0019748: secondary metabolic process3.07E-03
86GO:0016120: carotene biosynthetic process3.66E-03
87GO:0006564: L-serine biosynthetic process3.66E-03
88GO:0009904: chloroplast accumulation movement3.66E-03
89GO:0006656: phosphatidylcholine biosynthetic process3.66E-03
90GO:0000278: mitotic cell cycle3.66E-03
91GO:0006097: glyoxylate cycle3.66E-03
92GO:0006465: signal peptide processing3.66E-03
93GO:0071493: cellular response to UV-B3.66E-03
94GO:0042631: cellular response to water deprivation4.27E-03
95GO:0009228: thiamine biosynthetic process4.52E-03
96GO:0009643: photosynthetic acclimation4.52E-03
97GO:0046855: inositol phosphate dephosphorylation4.52E-03
98GO:0010304: PSII associated light-harvesting complex II catabolic process4.52E-03
99GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.52E-03
100GO:1902456: regulation of stomatal opening4.52E-03
101GO:0009903: chloroplast avoidance movement5.46E-03
102GO:0010189: vitamin E biosynthetic process5.46E-03
103GO:0009854: oxidative photosynthetic carbon pathway5.46E-03
104GO:0071333: cellular response to glucose stimulus5.46E-03
105GO:0009955: adaxial/abaxial pattern specification5.46E-03
106GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity5.46E-03
107GO:0006096: glycolytic process5.48E-03
108GO:0032502: developmental process6.08E-03
109GO:0008272: sulfate transport6.45E-03
110GO:0009769: photosynthesis, light harvesting in photosystem II6.45E-03
111GO:0009395: phospholipid catabolic process6.45E-03
112GO:1900056: negative regulation of leaf senescence6.45E-03
113GO:1900057: positive regulation of leaf senescence6.45E-03
114GO:0009645: response to low light intensity stimulus6.45E-03
115GO:0009704: de-etiolation7.50E-03
116GO:0042255: ribosome assembly7.50E-03
117GO:0006353: DNA-templated transcription, termination7.50E-03
118GO:0070413: trehalose metabolism in response to stress7.50E-03
119GO:0016559: peroxisome fission7.50E-03
120GO:0019827: stem cell population maintenance7.50E-03
121GO:0009642: response to light intensity7.50E-03
122GO:0071482: cellular response to light stimulus8.61E-03
123GO:0015996: chlorophyll catabolic process8.61E-03
124GO:0019430: removal of superoxide radicals8.61E-03
125GO:0006783: heme biosynthetic process9.78E-03
126GO:0009821: alkaloid biosynthetic process9.78E-03
127GO:0090333: regulation of stomatal closure9.78E-03
128GO:0019432: triglyceride biosynthetic process9.78E-03
129GO:0006779: porphyrin-containing compound biosynthetic process1.10E-02
130GO:0007346: regulation of mitotic cell cycle1.10E-02
131GO:0010380: regulation of chlorophyll biosynthetic process1.10E-02
132GO:0005975: carbohydrate metabolic process1.17E-02
133GO:0009641: shade avoidance1.23E-02
134GO:0006535: cysteine biosynthetic process from serine1.23E-02
135GO:0006782: protoporphyrinogen IX biosynthetic process1.23E-02
136GO:0006879: cellular iron ion homeostasis1.36E-02
137GO:0000272: polysaccharide catabolic process1.36E-02
138GO:0006415: translational termination1.36E-02
139GO:0018119: peptidyl-cysteine S-nitrosylation1.36E-02
140GO:0072593: reactive oxygen species metabolic process1.36E-02
141GO:0043085: positive regulation of catalytic activity1.36E-02
142GO:0009853: photorespiration1.37E-02
143GO:0016024: CDP-diacylglycerol biosynthetic process1.50E-02
144GO:0006790: sulfur compound metabolic process1.50E-02
145GO:0006108: malate metabolic process1.64E-02
146GO:0006006: glucose metabolic process1.64E-02
147GO:0009725: response to hormone1.64E-02
148GO:0009767: photosynthetic electron transport chain1.64E-02
149GO:0007015: actin filament organization1.79E-02
150GO:0019253: reductive pentose-phosphate cycle1.79E-02
151GO:0010223: secondary shoot formation1.79E-02
152GO:0009266: response to temperature stimulus1.79E-02
153GO:0048467: gynoecium development1.79E-02
154GO:0010020: chloroplast fission1.79E-02
155GO:0046854: phosphatidylinositol phosphorylation1.94E-02
156GO:0006636: unsaturated fatty acid biosynthetic process2.09E-02
157GO:0042023: DNA endoreduplication2.09E-02
158GO:0009833: plant-type primary cell wall biogenesis2.09E-02
159GO:0019762: glucosinolate catabolic process2.09E-02
160GO:0005992: trehalose biosynthetic process2.25E-02
161GO:0019344: cysteine biosynthetic process2.25E-02
162GO:0006364: rRNA processing2.39E-02
163GO:0016998: cell wall macromolecule catabolic process2.59E-02
164GO:0019915: lipid storage2.59E-02
165GO:0009269: response to desiccation2.59E-02
166GO:0016114: terpenoid biosynthetic process2.59E-02
167GO:0035428: hexose transmembrane transport2.76E-02
168GO:0016226: iron-sulfur cluster assembly2.76E-02
169GO:0071215: cellular response to abscisic acid stimulus2.94E-02
170GO:0009735: response to cytokinin3.10E-02
171GO:0009306: protein secretion3.11E-02
172GO:0016117: carotenoid biosynthetic process3.30E-02
173GO:0042335: cuticle development3.49E-02
174GO:0000413: protein peptidyl-prolyl isomerization3.49E-02
175GO:0010154: fruit development3.68E-02
176GO:0006662: glycerol ether metabolic process3.68E-02
177GO:0046323: glucose import3.68E-02
178GO:0009741: response to brassinosteroid3.68E-02
179GO:0006520: cellular amino acid metabolic process3.68E-02
180GO:0071472: cellular response to salt stress3.68E-02
181GO:0009791: post-embryonic development4.07E-02
182GO:0045893: positive regulation of transcription, DNA-templated4.31E-02
183GO:0009058: biosynthetic process4.48E-02
184GO:0009630: gravitropism4.48E-02
185GO:0010090: trichome morphogenesis4.68E-02
186GO:1901657: glycosyl compound metabolic process4.68E-02
187GO:0009567: double fertilization forming a zygote and endosperm4.89E-02
RankGO TermAdjusted P value
1GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
2GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
3GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
4GO:0008465: glycerate dehydrogenase activity0.00E+00
5GO:0046408: chlorophyll synthetase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
8GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
9GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
10GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
11GO:0045550: geranylgeranyl reductase activity0.00E+00
12GO:0046422: violaxanthin de-epoxidase activity0.00E+00
13GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
14GO:0009011: starch synthase activity1.04E-06
15GO:0004373: glycogen (starch) synthase activity2.69E-05
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.03E-04
17GO:0031409: pigment binding1.90E-04
18GO:0004332: fructose-bisphosphate aldolase activity2.27E-04
19GO:0034256: chlorophyll(ide) b reductase activity4.18E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.18E-04
21GO:0015168: glycerol transmembrane transporter activity4.18E-04
22GO:0031957: very long-chain fatty acid-CoA ligase activity4.18E-04
23GO:0045486: naringenin 3-dioxygenase activity4.18E-04
24GO:0005344: oxygen transporter activity4.18E-04
25GO:0035671: enone reductase activity4.18E-04
26GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.18E-04
27GO:0008184: glycogen phosphorylase activity4.18E-04
28GO:0004645: phosphorylase activity4.18E-04
29GO:0000234: phosphoethanolamine N-methyltransferase activity9.05E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity9.05E-04
31GO:0050017: L-3-cyanoalanine synthase activity9.05E-04
32GO:0008883: glutamyl-tRNA reductase activity9.05E-04
33GO:0047746: chlorophyllase activity9.05E-04
34GO:0042389: omega-3 fatty acid desaturase activity9.05E-04
35GO:0010297: heteropolysaccharide binding9.05E-04
36GO:0009977: proton motive force dependent protein transmembrane transporter activity9.05E-04
37GO:0004617: phosphoglycerate dehydrogenase activity9.05E-04
38GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity9.05E-04
39GO:0052832: inositol monophosphate 3-phosphatase activity9.05E-04
40GO:0033201: alpha-1,4-glucan synthase activity9.05E-04
41GO:0018708: thiol S-methyltransferase activity9.05E-04
42GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity9.05E-04
43GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.05E-04
44GO:0019172: glyoxalase III activity9.05E-04
45GO:0019156: isoamylase activity9.05E-04
46GO:0008934: inositol monophosphate 1-phosphatase activity9.05E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity9.05E-04
48GO:0042802: identical protein binding1.01E-03
49GO:0047372: acylglycerol lipase activity1.14E-03
50GO:0016168: chlorophyll binding1.24E-03
51GO:0008168: methyltransferase activity1.34E-03
52GO:0004751: ribose-5-phosphate isomerase activity1.47E-03
53GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.47E-03
54GO:0008864: formyltetrahydrofolate deformylase activity1.47E-03
55GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.47E-03
56GO:0050734: hydroxycinnamoyltransferase activity1.47E-03
57GO:0004565: beta-galactosidase activity1.48E-03
58GO:0003774: motor activity1.67E-03
59GO:0019843: rRNA binding1.89E-03
60GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.13E-03
61GO:0016851: magnesium chelatase activity2.13E-03
62GO:0046715: borate transmembrane transporter activity2.13E-03
63GO:0016149: translation release factor activity, codon specific2.13E-03
64GO:0022890: inorganic cation transmembrane transporter activity2.13E-03
65GO:0015204: urea transmembrane transporter activity2.86E-03
66GO:0003727: single-stranded RNA binding3.64E-03
67GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.66E-03
68GO:0051287: NAD binding3.86E-03
69GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.52E-03
70GO:0004784: superoxide dismutase activity4.52E-03
71GO:0016615: malate dehydrogenase activity4.52E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.52E-03
73GO:0008519: ammonium transmembrane transporter activity4.52E-03
74GO:2001070: starch binding4.52E-03
75GO:0004556: alpha-amylase activity4.52E-03
76GO:0004462: lactoylglutathione lyase activity4.52E-03
77GO:0030060: L-malate dehydrogenase activity5.46E-03
78GO:0004124: cysteine synthase activity5.46E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.46E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.46E-03
81GO:0102391: decanoate--CoA ligase activity5.46E-03
82GO:0048038: quinone binding5.69E-03
83GO:0004467: long-chain fatty acid-CoA ligase activity6.45E-03
84GO:0016791: phosphatase activity6.90E-03
85GO:0005337: nucleoside transmembrane transporter activity7.50E-03
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.61E-03
87GO:0008271: secondary active sulfate transmembrane transporter activity8.61E-03
88GO:0016491: oxidoreductase activity8.61E-03
89GO:0003747: translation release factor activity9.78E-03
90GO:0016844: strictosidine synthase activity1.10E-02
91GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.10E-02
92GO:0005381: iron ion transmembrane transporter activity1.10E-02
93GO:0008047: enzyme activator activity1.23E-02
94GO:0015386: potassium:proton antiporter activity1.36E-02
95GO:0003993: acid phosphatase activity1.43E-02
96GO:0015116: sulfate transmembrane transporter activity1.50E-02
97GO:0050661: NADP binding1.56E-02
98GO:0031072: heat shock protein binding1.64E-02
99GO:0003725: double-stranded RNA binding1.64E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity1.64E-02
101GO:0004185: serine-type carboxypeptidase activity1.77E-02
102GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.79E-02
103GO:0008266: poly(U) RNA binding1.79E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding1.92E-02
105GO:0051536: iron-sulfur cluster binding2.25E-02
106GO:0031418: L-ascorbic acid binding2.25E-02
107GO:0043130: ubiquitin binding2.25E-02
108GO:0016787: hydrolase activity2.40E-02
109GO:0015079: potassium ion transmembrane transporter activity2.42E-02
110GO:0016788: hydrolase activity, acting on ester bonds2.48E-02
111GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.92E-02
112GO:0016760: cellulose synthase (UDP-forming) activity2.94E-02
113GO:0022891: substrate-specific transmembrane transporter activity2.94E-02
114GO:0047134: protein-disulfide reductase activity3.30E-02
115GO:0004791: thioredoxin-disulfide reductase activity3.87E-02
116GO:0016853: isomerase activity3.87E-02
117GO:0005355: glucose transmembrane transporter activity3.87E-02
118GO:0015299: solute:proton antiporter activity3.87E-02
119GO:0050662: coenzyme binding3.87E-02
120GO:0004872: receptor activity4.07E-02
121GO:0019901: protein kinase binding4.07E-02
122GO:0016762: xyloglucan:xyloglucosyl transferase activity4.27E-02
123GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.68E-02
124GO:0000156: phosphorelay response regulator activity4.68E-02
125GO:0030170: pyridoxal phosphate binding4.71E-02
126GO:0016759: cellulose synthase activity4.89E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast1.71E-36
4GO:0009535: chloroplast thylakoid membrane2.63E-22
5GO:0009534: chloroplast thylakoid1.50E-21
6GO:0009941: chloroplast envelope2.40E-12
7GO:0009570: chloroplast stroma2.67E-09
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.96E-09
9GO:0009543: chloroplast thylakoid lumen2.32E-08
10GO:0009579: thylakoid5.30E-08
11GO:0010287: plastoglobule3.12E-07
12GO:0031969: chloroplast membrane1.61E-06
13GO:0031977: thylakoid lumen3.67E-06
14GO:0033281: TAT protein transport complex2.69E-05
15GO:0009522: photosystem I5.47E-05
16GO:0030076: light-harvesting complex1.62E-04
17GO:0009654: photosystem II oxygen evolving complex2.53E-04
18GO:0009515: granal stacked thylakoid4.18E-04
19GO:0005787: signal peptidase complex4.18E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]4.18E-04
21GO:0031361: integral component of thylakoid membrane4.18E-04
22GO:0009523: photosystem II6.66E-04
23GO:0019898: extrinsic component of membrane6.66E-04
24GO:0043036: starch grain9.05E-04
25GO:0000427: plastid-encoded plastid RNA polymerase complex9.05E-04
26GO:0009569: chloroplast starch grain9.05E-04
27GO:0016459: myosin complex9.91E-04
28GO:0048046: apoplast1.01E-03
29GO:0010007: magnesium chelatase complex1.47E-03
30GO:0030095: chloroplast photosystem II1.67E-03
31GO:0042651: thylakoid membrane2.55E-03
32GO:0009517: PSII associated light-harvesting complex II2.86E-03
33GO:0005773: vacuole3.24E-03
34GO:0010319: stromule7.34E-03
35GO:0009501: amyloplast7.50E-03
36GO:0031982: vesicle7.50E-03
37GO:0000307: cyclin-dependent protein kinase holoenzyme complex8.61E-03
38GO:0005763: mitochondrial small ribosomal subunit9.78E-03
39GO:0008180: COP9 signalosome9.78E-03
40GO:0019005: SCF ubiquitin ligase complex1.08E-02
41GO:0005777: peroxisome1.44E-02
42GO:0032040: small-subunit processome1.50E-02
43GO:0009508: plastid chromosome1.64E-02
44GO:0043234: protein complex2.09E-02
45GO:0015935: small ribosomal subunit2.59E-02
46GO:0005840: ribosome4.04E-02
47GO:0005623: cell4.36E-02
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Gene type



Gene DE type