co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G26670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
8	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
9	GO:0046620: regulation of organ growth	4.31E-07
10	GO:0010020: chloroplast fission	8.76E-06
11	GO:0009733: response to auxin	3.25E-05
12	GO:0046739: transport of virus in multicellular host	7.62E-05
13	GO:0009658: chloroplast organization	1.06E-04
14	GO:0040008: regulation of growth	1.84E-04
15	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.02E-04
16	GO:0016123: xanthophyll biosynthetic process	2.04E-04
17	GO:0015995: chlorophyll biosynthetic process	2.76E-04
18	GO:0042793: transcription from plastid promoter	2.88E-04
19	GO:0016554: cytidine to uridine editing	2.88E-04
20	GO:0030488: tRNA methylation	3.85E-04
21	GO:0070509: calcium ion import	4.87E-04
22	GO:0005980: glycogen catabolic process	4.87E-04
23	GO:0006438: valyl-tRNA aminoacylation	4.87E-04
24	GO:0010442: guard cell morphogenesis	4.87E-04
25	GO:0010063: positive regulation of trichoblast fate specification	4.87E-04
26	GO:0010480: microsporocyte differentiation	4.87E-04
27	GO:0042759: long-chain fatty acid biosynthetic process	4.87E-04
28	GO:1902458: positive regulation of stomatal opening	4.87E-04
29	GO:0015904: tetracycline transport	4.87E-04
30	GO:0048363: mucilage pectin metabolic process	4.87E-04
31	GO:0000025: maltose catabolic process	4.87E-04
32	GO:0048437: floral organ development	4.95E-04
33	GO:0009926: auxin polar transport	7.07E-04
34	GO:0010305: leaf vascular tissue pattern formation	7.40E-04
35	GO:0010497: plasmodesmata-mediated intercellular transport	7.51E-04
36	GO:0009734: auxin-activated signaling pathway	1.01E-03
37	GO:0006423: cysteinyl-tRNA aminoacylation	1.05E-03
38	GO:0018026: peptidyl-lysine monomethylation	1.05E-03
39	GO:0071668: plant-type cell wall assembly	1.05E-03
40	GO:0009786: regulation of asymmetric cell division	1.05E-03
41	GO:0031648: protein destabilization	1.05E-03
42	GO:0001682: tRNA 5'-leader removal	1.05E-03
43	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.05E-03
44	GO:2000123: positive regulation of stomatal complex development	1.05E-03
45	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.05E-03
46	GO:0052541: plant-type cell wall cellulose metabolic process	1.05E-03
47	GO:0048255: mRNA stabilization	1.05E-03
48	GO:1900865: chloroplast RNA modification	1.06E-03
49	GO:0006779: porphyrin-containing compound biosynthetic process	1.06E-03
50	GO:0009098: leucine biosynthetic process	1.06E-03
51	GO:0006782: protoporphyrinogen IX biosynthetic process	1.23E-03
52	GO:0009641: shade avoidance	1.23E-03
53	GO:0010027: thylakoid membrane organization	1.54E-03
54	GO:0005983: starch catabolic process	1.63E-03
55	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.71E-03
56	GO:0051604: protein maturation	1.71E-03
57	GO:0045910: negative regulation of DNA recombination	1.71E-03
58	GO:0070588: calcium ion transmembrane transport	2.34E-03
59	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.48E-03
60	GO:0016556: mRNA modification	2.48E-03
61	GO:0043572: plastid fission	2.48E-03
62	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.48E-03
63	GO:0010071: root meristem specification	2.48E-03
64	GO:0051513: regulation of monopolar cell growth	2.48E-03
65	GO:0007231: osmosensory signaling pathway	2.48E-03
66	GO:0009102: biotin biosynthetic process	2.48E-03
67	GO:0010239: chloroplast mRNA processing	2.48E-03
68	GO:0009793: embryo development ending in seed dormancy	3.31E-03
69	GO:2000038: regulation of stomatal complex development	3.34E-03
70	GO:0010109: regulation of photosynthesis	3.34E-03
71	GO:0009765: photosynthesis, light harvesting	3.34E-03
72	GO:0033500: carbohydrate homeostasis	3.34E-03
73	GO:0016120: carotene biosynthetic process	4.28E-03
74	GO:0045038: protein import into chloroplast thylakoid membrane	4.28E-03
75	GO:0048497: maintenance of floral organ identity	4.28E-03
76	GO:0010375: stomatal complex patterning	4.28E-03
77	GO:0000304: response to singlet oxygen	4.28E-03
78	GO:0080110: sporopollenin biosynthetic process	4.28E-03
79	GO:0009451: RNA modification	4.55E-03
80	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.30E-03
81	GO:0010405: arabinogalactan protein metabolic process	5.30E-03
82	GO:0009913: epidermal cell differentiation	5.30E-03
83	GO:1902456: regulation of stomatal opening	5.30E-03
84	GO:0008033: tRNA processing	5.37E-03
85	GO:0016042: lipid catabolic process	5.93E-03
86	GO:0042026: protein refolding	6.40E-03
87	GO:0009082: branched-chain amino acid biosynthetic process	6.40E-03
88	GO:0006458: 'de novo' protein folding	6.40E-03
89	GO:0017148: negative regulation of translation	6.40E-03
90	GO:1901259: chloroplast rRNA processing	6.40E-03
91	GO:0009099: valine biosynthetic process	6.40E-03
92	GO:0080086: stamen filament development	6.40E-03
93	GO:0009648: photoperiodism	6.40E-03
94	GO:0071333: cellular response to glucose stimulus	6.40E-03
95	GO:0042372: phylloquinone biosynthetic process	6.40E-03
96	GO:0010098: suspensor development	7.57E-03
97	GO:0010444: guard mother cell differentiation	7.57E-03
98	GO:0048528: post-embryonic root development	7.57E-03
99	GO:0032502: developmental process	7.65E-03
100	GO:0006353: DNA-templated transcription, termination	8.81E-03
101	GO:0006605: protein targeting	8.81E-03
102	GO:2000070: regulation of response to water deprivation	8.81E-03
103	GO:0000105: histidine biosynthetic process	8.81E-03
104	GO:0009231: riboflavin biosynthetic process	8.81E-03
105	GO:0001522: pseudouridine synthesis	8.81E-03
106	GO:0009742: brassinosteroid mediated signaling pathway	1.00E-02
107	GO:0007186: G-protein coupled receptor signaling pathway	1.01E-02
108	GO:0009657: plastid organization	1.01E-02
109	GO:0009097: isoleucine biosynthetic process	1.01E-02
110	GO:0006526: arginine biosynthetic process	1.01E-02
111	GO:0015996: chlorophyll catabolic process	1.01E-02
112	GO:0046916: cellular transition metal ion homeostasis	1.15E-02
113	GO:0048507: meristem development	1.15E-02
114	GO:0000373: Group II intron splicing	1.15E-02
115	GO:0000902: cell morphogenesis	1.15E-02
116	GO:0009835: fruit ripening	1.15E-02
117	GO:0051865: protein autoubiquitination	1.15E-02
118	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.29E-02
119	GO:0043067: regulation of programmed cell death	1.29E-02
120	GO:0000160: phosphorelay signal transduction system	1.43E-02
121	GO:0048829: root cap development	1.45E-02
122	GO:0006298: mismatch repair	1.45E-02
123	GO:0010629: negative regulation of gene expression	1.45E-02
124	GO:0009073: aromatic amino acid family biosynthetic process	1.60E-02
125	GO:0018119: peptidyl-cysteine S-nitrosylation	1.60E-02
126	GO:0048229: gametophyte development	1.60E-02
127	GO:0006816: calcium ion transport	1.60E-02
128	GO:0045892: negative regulation of transcription, DNA-templated	1.60E-02
129	GO:0006508: proteolysis	1.65E-02
130	GO:0045087: innate immune response	1.73E-02
131	GO:0045037: protein import into chloroplast stroma	1.76E-02
132	GO:0030048: actin filament-based movement	1.93E-02
133	GO:0009691: cytokinin biosynthetic process	1.93E-02
134	GO:0006006: glucose metabolic process	1.93E-02
135	GO:0050826: response to freezing	1.93E-02
136	GO:0010075: regulation of meristem growth	1.93E-02
137	GO:0009725: response to hormone	1.93E-02
138	GO:0010588: cotyledon vascular tissue pattern formation	1.93E-02
139	GO:0030001: metal ion transport	1.97E-02
140	GO:0006468: protein phosphorylation	1.99E-02
141	GO:0006631: fatty acid metabolic process	2.06E-02
142	GO:0010207: photosystem II assembly	2.11E-02
143	GO:0009266: response to temperature stimulus	2.11E-02
144	GO:0009934: regulation of meristem structural organization	2.11E-02
145	GO:0007166: cell surface receptor signaling pathway	2.21E-02
146	GO:0010030: positive regulation of seed germination	2.28E-02
147	GO:0010025: wax biosynthetic process	2.47E-02
148	GO:0006071: glycerol metabolic process	2.47E-02
149	GO:0000162: tryptophan biosynthetic process	2.47E-02
150	GO:0051017: actin filament bundle assembly	2.66E-02
151	GO:0010026: trichome differentiation	2.85E-02
152	GO:0006418: tRNA aminoacylation for protein translation	2.85E-02
153	GO:0009736: cytokinin-activated signaling pathway	3.01E-02
154	GO:0031408: oxylipin biosynthetic process	3.05E-02
155	GO:0048511: rhythmic process	3.05E-02
156	GO:0061077: chaperone-mediated protein folding	3.05E-02
157	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.25E-02
158	GO:0030245: cellulose catabolic process	3.25E-02
159	GO:0009693: ethylene biosynthetic process	3.46E-02
160	GO:0010082: regulation of root meristem growth	3.46E-02
161	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.46E-02
162	GO:0048316: seed development	3.67E-02
163	GO:0042127: regulation of cell proliferation	3.67E-02
164	GO:0048367: shoot system development	3.67E-02
165	GO:0010584: pollen exine formation	3.67E-02
166	GO:0016117: carotenoid biosynthetic process	3.89E-02
167	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.89E-02
168	GO:0048366: leaf development	3.95E-02
169	GO:0000271: polysaccharide biosynthetic process	4.11E-02
170	GO:0080022: primary root development	4.11E-02
171	GO:0034220: ion transmembrane transport	4.11E-02
172	GO:0000413: protein peptidyl-prolyl isomerization	4.11E-02
173	GO:0010087: phloem or xylem histogenesis	4.11E-02
174	GO:0010118: stomatal movement	4.11E-02
175	GO:0048653: anther development	4.11E-02
176	GO:0042631: cellular response to water deprivation	4.11E-02
177	GO:0045489: pectin biosynthetic process	4.33E-02
178	GO:0006520: cellular amino acid metabolic process	4.33E-02
179	GO:0006662: glycerol ether metabolic process	4.33E-02
180	GO:0010197: polar nucleus fusion	4.33E-02
181	GO:0010182: sugar mediated signaling pathway	4.33E-02
182	GO:0009958: positive gravitropism	4.33E-02
183	GO:0048544: recognition of pollen	4.56E-02
184	GO:0007018: microtubule-based movement	4.56E-02
185	GO:0042752: regulation of circadian rhythm	4.56E-02
186	GO:0009646: response to absence of light	4.56E-02
187	GO:0048825: cotyledon development	4.80E-02
188	GO:0009416: response to light stimulus	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0071633: dihydroceramidase activity	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	7.62E-05
8	GO:0004519: endonuclease activity	1.37E-04
9	GO:0004176: ATP-dependent peptidase activity	3.90E-04
10	GO:0003723: RNA binding	4.79E-04
11	GO:0004134: 4-alpha-glucanotransferase activity	4.87E-04
12	GO:0050308: sugar-phosphatase activity	4.87E-04
13	GO:0004645: phosphorylase activity	4.87E-04
14	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	4.87E-04
15	GO:0019203: carbohydrate phosphatase activity	4.87E-04
16	GO:0052381: tRNA dimethylallyltransferase activity	4.87E-04
17	GO:0004832: valine-tRNA ligase activity	4.87E-04
18	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.87E-04
19	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.87E-04
20	GO:0050139: nicotinate-N-glucosyltransferase activity	4.87E-04
21	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.87E-04
22	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.87E-04
23	GO:0008184: glycogen phosphorylase activity	4.87E-04
24	GO:0043621: protein self-association	7.97E-04
25	GO:0005524: ATP binding	1.02E-03
26	GO:0008493: tetracycline transporter activity	1.05E-03
27	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.05E-03
28	GO:0003852: 2-isopropylmalate synthase activity	1.05E-03
29	GO:0004817: cysteine-tRNA ligase activity	1.05E-03
30	GO:0008237: metallopeptidase activity	1.32E-03
31	GO:0016805: dipeptidase activity	1.71E-03
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.71E-03
33	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.71E-03
34	GO:0004180: carboxypeptidase activity	1.71E-03
35	GO:0070330: aromatase activity	1.71E-03
36	GO:0005504: fatty acid binding	1.71E-03
37	GO:0005262: calcium channel activity	1.85E-03
38	GO:0008266: poly(U) RNA binding	2.09E-03
39	GO:0016851: magnesium chelatase activity	2.48E-03
40	GO:0052656: L-isoleucine transaminase activity	2.48E-03
41	GO:0043023: ribosomal large subunit binding	2.48E-03
42	GO:0052654: L-leucine transaminase activity	2.48E-03
43	GO:0052655: L-valine transaminase activity	2.48E-03
44	GO:0003746: translation elongation factor activity	2.92E-03
45	GO:0004084: branched-chain-amino-acid transaminase activity	3.34E-03
46	GO:0019199: transmembrane receptor protein kinase activity	3.34E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	3.34E-03
48	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.34E-03
49	GO:0045430: chalcone isomerase activity	3.34E-03
50	GO:0018685: alkane 1-monooxygenase activity	4.28E-03
51	GO:0003727: single-stranded RNA binding	4.58E-03
52	GO:0016208: AMP binding	5.30E-03
53	GO:2001070: starch binding	5.30E-03
54	GO:0030983: mismatched DNA binding	5.30E-03
55	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.30E-03
56	GO:0004526: ribonuclease P activity	5.30E-03
57	GO:0016832: aldehyde-lyase activity	6.40E-03
58	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	6.40E-03
59	GO:0051920: peroxiredoxin activity	6.40E-03
60	GO:0000156: phosphorelay response regulator activity	8.17E-03
61	GO:0016209: antioxidant activity	8.81E-03
62	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	8.81E-03
63	GO:0008173: RNA methyltransferase activity	1.01E-02
64	GO:0046914: transition metal ion binding	1.01E-02
65	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.15E-02
66	GO:0004674: protein serine/threonine kinase activity	1.15E-02
67	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.15E-02
68	GO:0030247: polysaccharide binding	1.23E-02
69	GO:0016887: ATPase activity	1.34E-02
70	GO:0052689: carboxylic ester hydrolase activity	1.38E-02
71	GO:0030170: pyridoxal phosphate binding	1.42E-02
72	GO:0004222: metalloendopeptidase activity	1.50E-02
73	GO:0044183: protein binding involved in protein folding	1.60E-02
74	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.71E-02
75	GO:0003697: single-stranded DNA binding	1.73E-02
76	GO:0009982: pseudouridine synthase activity	1.93E-02
77	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.11E-02
78	GO:0003774: motor activity	2.11E-02
79	GO:0003712: transcription cofactor activity	2.28E-02
80	GO:0008146: sulfotransferase activity	2.28E-02
81	GO:0009055: electron carrier activity	2.37E-02
82	GO:0035091: phosphatidylinositol binding	2.42E-02
83	GO:0005198: structural molecule activity	2.51E-02
84	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.61E-02
85	GO:0051536: iron-sulfur cluster binding	2.66E-02
86	GO:0005528: FK506 binding	2.66E-02
87	GO:0043424: protein histidine kinase binding	2.85E-02
88	GO:0033612: receptor serine/threonine kinase binding	3.05E-02
89	GO:0016298: lipase activity	3.12E-02
90	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.25E-02
91	GO:0016788: hydrolase activity, acting on ester bonds	3.31E-02
92	GO:0003777: microtubule motor activity	3.33E-02
93	GO:0008810: cellulase activity	3.46E-02
94	GO:0047134: protein-disulfide reductase activity	3.89E-02
95	GO:0004812: aminoacyl-tRNA ligase activity	3.89E-02
96	GO:0004650: polygalacturonase activity	3.91E-02
97	GO:0001085: RNA polymerase II transcription factor binding	4.33E-02
98	GO:0015035: protein disulfide oxidoreductase activity	4.40E-02
99	GO:0008026: ATP-dependent helicase activity	4.53E-02
100	GO:0050662: coenzyme binding	4.56E-02
101	GO:0004791: thioredoxin-disulfide reductase activity	4.56E-02
102	GO:0019901: protein kinase binding	4.80E-02
103	GO:0004872: receptor activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.59E-20
2	GO:0009570: chloroplast stroma	8.92E-13
3	GO:0009941: chloroplast envelope	1.07E-09
4	GO:0009534: chloroplast thylakoid	1.59E-06
5	GO:0046658: anchored component of plasma membrane	6.86E-05
6	GO:0009508: plastid chromosome	1.59E-04
7	GO:0009295: nucleoid	1.71E-04
8	GO:0031357: integral component of chloroplast inner membrane	1.05E-03
9	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.05E-03
10	GO:0031225: anchored component of membrane	1.48E-03
11	GO:0030139: endocytic vesicle	1.71E-03
12	GO:0009528: plastid inner membrane	1.71E-03
13	GO:0010007: magnesium chelatase complex	1.71E-03
14	GO:0032585: multivesicular body membrane	2.48E-03
15	GO:0005886: plasma membrane	2.55E-03
16	GO:0031969: chloroplast membrane	3.14E-03
17	GO:0009526: plastid envelope	3.34E-03
18	GO:0009527: plastid outer membrane	3.34E-03
19	GO:0009532: plastid stroma	3.52E-03
20	GO:0015629: actin cytoskeleton	4.21E-03
21	GO:0055035: plastid thylakoid membrane	4.28E-03
22	GO:0009536: plastid	4.50E-03
23	GO:0009535: chloroplast thylakoid membrane	7.54E-03
24	GO:0042807: central vacuole	7.57E-03
25	GO:0009986: cell surface	7.57E-03
26	GO:0009533: chloroplast stromal thylakoid	7.57E-03
27	GO:0009501: amyloplast	8.81E-03
28	GO:0010319: stromule	9.24E-03
29	GO:0000326: protein storage vacuole	1.01E-02
30	GO:0030529: intracellular ribonucleoprotein complex	1.04E-02
31	GO:0005874: microtubule	1.13E-02
32	GO:0009543: chloroplast thylakoid lumen	1.24E-02
33	GO:0000418: DNA-directed RNA polymerase IV complex	1.45E-02
34	GO:0016459: myosin complex	1.45E-02
35	GO:0031977: thylakoid lumen	2.06E-02
36	GO:0030095: chloroplast photosystem II	2.11E-02
37	GO:0009579: thylakoid	2.29E-02
38	GO:0043231: intracellular membrane-bounded organelle	2.46E-02
39	GO:0043234: protein complex	2.47E-02
40	GO:0042651: thylakoid membrane	2.85E-02
41	GO:0009654: photosystem II oxygen evolving complex	2.85E-02
42	GO:0005871: kinesin complex	3.89E-02
43	GO:0009706: chloroplast inner membrane	4.28E-02
44	GO:0031965: nuclear membrane	4.80E-02
45	GO:0019898: extrinsic component of membrane	4.80E-02