co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
3	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
4	GO:0070125: mitochondrial translational elongation	0.00E+00
5	GO:0042352: GDP-L-fucose salvage	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0000819: sister chromatid segregation	0.00E+00
9	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
10	GO:0010588: cotyledon vascular tissue pattern formation	9.32E-05
11	GO:0010020: chloroplast fission	1.12E-04
12	GO:0048497: maintenance of floral organ identity	1.37E-04
13	GO:0005980: glycogen catabolic process	3.81E-04
14	GO:0030198: extracellular matrix organization	3.81E-04
15	GO:0006438: valyl-tRNA aminoacylation	3.81E-04
16	GO:0070509: calcium ion import	3.81E-04
17	GO:0046520: sphingoid biosynthetic process	3.81E-04
18	GO:0010480: microsporocyte differentiation	3.81E-04
19	GO:0042759: long-chain fatty acid biosynthetic process	3.81E-04
20	GO:1902458: positive regulation of stomatal opening	3.81E-04
21	GO:0015904: tetracycline transport	3.81E-04
22	GO:0000023: maltose metabolic process	3.81E-04
23	GO:0048016: inositol phosphate-mediated signaling	3.81E-04
24	GO:0046620: regulation of organ growth	4.31E-04
25	GO:0009734: auxin-activated signaling pathway	4.45E-04
26	GO:0009733: response to auxin	4.87E-04
27	GO:0009638: phototropism	7.45E-04
28	GO:0016042: lipid catabolic process	7.93E-04
29	GO:0009629: response to gravity	8.27E-04
30	GO:0019388: galactose catabolic process	8.27E-04
31	GO:0007154: cell communication	8.27E-04
32	GO:0018026: peptidyl-lysine monomethylation	8.27E-04
33	GO:0071497: cellular response to freezing	8.27E-04
34	GO:0009786: regulation of asymmetric cell division	8.27E-04
35	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.27E-04
36	GO:2000123: positive regulation of stomatal complex development	8.27E-04
37	GO:1901529: positive regulation of anion channel activity	8.27E-04
38	GO:0048829: root cap development	8.68E-04
39	GO:0010027: thylakoid membrane organization	9.72E-04
40	GO:0048229: gametophyte development	9.99E-04
41	GO:0009793: embryo development ending in seed dormancy	1.18E-03
42	GO:2000012: regulation of auxin polar transport	1.29E-03
43	GO:0010102: lateral root morphogenesis	1.29E-03
44	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.34E-03
45	GO:0030261: chromosome condensation	1.34E-03
46	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.34E-03
47	GO:1902448: positive regulation of shade avoidance	1.34E-03
48	GO:0070588: calcium ion transmembrane transport	1.63E-03
49	GO:0009647: skotomorphogenesis	1.93E-03
50	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.93E-03
51	GO:0046739: transport of virus in multicellular host	1.93E-03
52	GO:0009590: detection of gravity	1.93E-03
53	GO:0009558: embryo sac cellularization	1.93E-03
54	GO:0043572: plastid fission	1.93E-03
55	GO:0007231: osmosensory signaling pathway	1.93E-03
56	GO:0009102: biotin biosynthetic process	1.93E-03
57	GO:0032147: activation of protein kinase activity	1.93E-03
58	GO:0040008: regulation of growth	2.33E-03
59	GO:0009640: photomorphogenesis	2.53E-03
60	GO:0033500: carbohydrate homeostasis	2.60E-03
61	GO:2000038: regulation of stomatal complex development	2.60E-03
62	GO:0006808: regulation of nitrogen utilization	2.60E-03
63	GO:1901141: regulation of lignin biosynthetic process	2.60E-03
64	GO:0060236: regulation of mitotic spindle organization	2.60E-03
65	GO:0016131: brassinosteroid metabolic process	3.32E-03
66	GO:0045038: protein import into chloroplast thylakoid membrane	3.32E-03
67	GO:0007094: mitotic spindle assembly checkpoint	3.32E-03
68	GO:0032957: inositol trisphosphate metabolic process	3.32E-03
69	GO:0010375: stomatal complex patterning	3.32E-03
70	GO:0010305: leaf vascular tissue pattern formation	4.00E-03
71	GO:0010182: sugar mediated signaling pathway	4.00E-03
72	GO:0009913: epidermal cell differentiation	4.11E-03
73	GO:1902456: regulation of stomatal opening	4.11E-03
74	GO:0042793: transcription from plastid promoter	4.11E-03
75	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.11E-03
76	GO:0046855: inositol phosphate dephosphorylation	4.11E-03
77	GO:0010405: arabinogalactan protein metabolic process	4.11E-03
78	GO:0007018: microtubule-based movement	4.31E-03
79	GO:0009658: chloroplast organization	4.87E-03
80	GO:0010067: procambium histogenesis	4.95E-03
81	GO:0071554: cell wall organization or biogenesis	4.95E-03
82	GO:2000033: regulation of seed dormancy process	4.95E-03
83	GO:0030488: tRNA methylation	4.95E-03
84	GO:0048437: floral organ development	5.85E-03
85	GO:0010098: suspensor development	5.85E-03
86	GO:0010444: guard mother cell differentiation	5.85E-03
87	GO:0030307: positive regulation of cell growth	5.85E-03
88	GO:0000712: resolution of meiotic recombination intermediates	5.85E-03
89	GO:0048528: post-embryonic root development	5.85E-03
90	GO:0030497: fatty acid elongation	5.85E-03
91	GO:0009742: brassinosteroid mediated signaling pathway	6.25E-03
92	GO:0005978: glycogen biosynthetic process	6.80E-03
93	GO:2000070: regulation of response to water deprivation	6.80E-03
94	GO:0007186: G-protein coupled receptor signaling pathway	7.80E-03
95	GO:0010497: plasmodesmata-mediated intercellular transport	7.80E-03
96	GO:0006526: arginine biosynthetic process	7.80E-03
97	GO:0032544: plastid translation	7.80E-03
98	GO:0015996: chlorophyll catabolic process	7.80E-03
99	GO:0005975: carbohydrate metabolic process	8.62E-03
100	GO:0010206: photosystem II repair	8.86E-03
101	GO:0009835: fruit ripening	8.86E-03
102	GO:0009416: response to light stimulus	8.88E-03
103	GO:0000160: phosphorelay signal transduction system	9.84E-03
104	GO:0009813: flavonoid biosynthetic process	9.84E-03
105	GO:0007346: regulation of mitotic cell cycle	9.96E-03
106	GO:0010162: seed dormancy process	1.11E-02
107	GO:0051026: chiasma assembly	1.11E-02
108	GO:0009641: shade avoidance	1.11E-02
109	GO:0006949: syncytium formation	1.11E-02
110	GO:0006259: DNA metabolic process	1.11E-02
111	GO:0006865: amino acid transport	1.14E-02
112	GO:0006816: calcium ion transport	1.23E-02
113	GO:0006265: DNA topological change	1.23E-02
114	GO:0009073: aromatic amino acid family biosynthetic process	1.23E-02
115	GO:0046856: phosphatidylinositol dephosphorylation	1.23E-02
116	GO:0005983: starch catabolic process	1.36E-02
117	GO:0045037: protein import into chloroplast stroma	1.36E-02
118	GO:0006312: mitotic recombination	1.36E-02
119	GO:0012501: programmed cell death	1.36E-02
120	GO:0006631: fatty acid metabolic process	1.42E-02
121	GO:0030048: actin filament-based movement	1.48E-02
122	GO:0009785: blue light signaling pathway	1.48E-02
123	GO:0006006: glucose metabolic process	1.48E-02
124	GO:0050826: response to freezing	1.48E-02
125	GO:0010075: regulation of meristem growth	1.48E-02
126	GO:0009926: auxin polar transport	1.54E-02
127	GO:0006508: proteolysis	1.60E-02
128	GO:0010207: photosystem II assembly	1.62E-02
129	GO:0007034: vacuolar transport	1.62E-02
130	GO:0009266: response to temperature stimulus	1.62E-02
131	GO:0009934: regulation of meristem structural organization	1.62E-02
132	GO:0080188: RNA-directed DNA methylation	1.75E-02
133	GO:0090351: seedling development	1.75E-02
134	GO:0010025: wax biosynthetic process	1.89E-02
135	GO:0006636: unsaturated fatty acid biosynthetic process	1.89E-02
136	GO:0006071: glycerol metabolic process	1.89E-02
137	GO:0006833: water transport	1.89E-02
138	GO:0080147: root hair cell development	2.04E-02
139	GO:0009736: cytokinin-activated signaling pathway	2.08E-02
140	GO:0006418: tRNA aminoacylation for protein translation	2.19E-02
141	GO:0007017: microtubule-based process	2.19E-02
142	GO:0019953: sexual reproduction	2.19E-02
143	GO:0003333: amino acid transmembrane transport	2.34E-02
144	GO:0048511: rhythmic process	2.34E-02
145	GO:0048367: shoot system development	2.54E-02
146	GO:0009693: ethylene biosynthetic process	2.65E-02
147	GO:0010082: regulation of root meristem growth	2.65E-02
148	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.78E-02
149	GO:0010091: trichome branching	2.82E-02
150	GO:0009624: response to nematode	2.96E-02
151	GO:0080022: primary root development	3.15E-02
152	GO:0034220: ion transmembrane transport	3.15E-02
153	GO:0010051: xylem and phloem pattern formation	3.15E-02
154	GO:0010087: phloem or xylem histogenesis	3.15E-02
155	GO:0010118: stomatal movement	3.15E-02
156	GO:0048653: anther development	3.15E-02
157	GO:0006520: cellular amino acid metabolic process	3.33E-02
158	GO:0009741: response to brassinosteroid	3.33E-02
159	GO:0045892: negative regulation of transcription, DNA-templated	3.40E-02
160	GO:0042752: regulation of circadian rhythm	3.50E-02
161	GO:0007059: chromosome segregation	3.50E-02
162	GO:0009646: response to absence of light	3.50E-02
163	GO:0048825: cotyledon development	3.68E-02
164	GO:0019252: starch biosynthetic process	3.68E-02
165	GO:0007275: multicellular organism development	3.74E-02
166	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.86E-02
167	GO:0016132: brassinosteroid biosynthetic process	3.86E-02
168	GO:0009058: biosynthetic process	3.90E-02
169	GO:0010583: response to cyclopentenone	4.05E-02
170	GO:0032502: developmental process	4.05E-02
171	GO:0030163: protein catabolic process	4.24E-02
172	GO:0071281: cellular response to iron ion	4.24E-02
173	GO:1901657: glycosyl compound metabolic process	4.24E-02
174	GO:0009790: embryo development	4.31E-02
175	GO:0009828: plant-type cell wall loosening	4.43E-02
176	GO:0048364: root development	4.54E-02
177	GO:0007267: cell-cell signaling	4.62E-02
178	GO:0051607: defense response to virus	4.82E-02
179	GO:0000910: cytokinesis	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0050201: fucokinase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
5	GO:0005201: extracellular matrix structural constituent	0.00E+00
6	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
7	GO:0004076: biotin synthase activity	0.00E+00
8	GO:0005363: maltose transmembrane transporter activity	0.00E+00
9	GO:0004176: ATP-dependent peptidase activity	1.29E-05
10	GO:0008237: metallopeptidase activity	8.90E-05
11	GO:0046030: inositol trisphosphate phosphatase activity	3.81E-04
12	GO:0004645: phosphorylase activity	3.81E-04
13	GO:0009374: biotin binding	3.81E-04
14	GO:0004832: valine-tRNA ligase activity	3.81E-04
15	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.81E-04
16	GO:0000170: sphingosine hydroxylase activity	3.81E-04
17	GO:0050139: nicotinate-N-glucosyltransferase activity	3.81E-04
18	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.81E-04
19	GO:0008184: glycogen phosphorylase activity	3.81E-04
20	GO:0042284: sphingolipid delta-4 desaturase activity	8.27E-04
21	GO:0016630: protochlorophyllide reductase activity	8.27E-04
22	GO:0008493: tetracycline transporter activity	8.27E-04
23	GO:0004614: phosphoglucomutase activity	8.27E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.27E-04
25	GO:0005262: calcium channel activity	1.29E-03
26	GO:0017150: tRNA dihydrouridine synthase activity	1.34E-03
27	GO:0005504: fatty acid binding	1.34E-03
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.34E-03
29	GO:0003916: DNA topoisomerase activity	1.93E-03
30	GO:0043023: ribosomal large subunit binding	1.93E-03
31	GO:0001872: (1->3)-beta-D-glucan binding	1.93E-03
32	GO:0052689: carboxylic ester hydrolase activity	1.95E-03
33	GO:0045430: chalcone isomerase activity	2.60E-03
34	GO:0019199: transmembrane receptor protein kinase activity	2.60E-03
35	GO:0004335: galactokinase activity	2.60E-03
36	GO:0016279: protein-lysine N-methyltransferase activity	2.60E-03
37	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.60E-03
38	GO:0003727: single-stranded RNA binding	3.17E-03
39	GO:0003989: acetyl-CoA carboxylase activity	3.32E-03
40	GO:0001085: RNA polymerase II transcription factor binding	4.00E-03
41	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	4.11E-03
42	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.11E-03
43	GO:0003777: microtubule motor activity	4.22E-03
44	GO:0016832: aldehyde-lyase activity	4.95E-03
45	GO:0016788: hydrolase activity, acting on ester bonds	5.01E-03
46	GO:0000156: phosphorelay response regulator activity	5.64E-03
47	GO:0016413: O-acetyltransferase activity	6.76E-03
48	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.80E-03
49	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.80E-03
50	GO:0008173: RNA methyltransferase activity	7.80E-03
51	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.80E-03
52	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.86E-03
53	GO:0004871: signal transducer activity	9.55E-03
54	GO:0004222: metalloendopeptidase activity	1.03E-02
55	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.08E-02
56	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.08E-02
57	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.23E-02
58	GO:0047372: acylglycerol lipase activity	1.23E-02
59	GO:0008017: microtubule binding	1.24E-02
60	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.36E-02
61	GO:0003725: double-stranded RNA binding	1.48E-02
62	GO:0004565: beta-galactosidase activity	1.48E-02
63	GO:0031072: heat shock protein binding	1.48E-02
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.62E-02
65	GO:0003774: motor activity	1.62E-02
66	GO:0043621: protein self-association	1.66E-02
67	GO:0003712: transcription cofactor activity	1.75E-02
68	GO:0008146: sulfotransferase activity	1.75E-02
69	GO:0004190: aspartic-type endopeptidase activity	1.75E-02
70	GO:0008289: lipid binding	2.01E-02
71	GO:0005515: protein binding	2.03E-02
72	GO:0005528: FK506 binding	2.04E-02
73	GO:0004674: protein serine/threonine kinase activity	2.09E-02
74	GO:0015171: amino acid transmembrane transporter activity	2.30E-02
75	GO:0008094: DNA-dependent ATPase activity	2.34E-02
76	GO:0033612: receptor serine/threonine kinase binding	2.34E-02
77	GO:0008408: 3'-5' exonuclease activity	2.34E-02
78	GO:0016887: ATPase activity	2.36E-02
79	GO:0004812: aminoacyl-tRNA ligase activity	2.98E-02
80	GO:0004527: exonuclease activity	3.33E-02
81	GO:0050662: coenzyme binding	3.50E-02
82	GO:0016853: isomerase activity	3.50E-02
83	GO:0042803: protein homodimerization activity	3.53E-02
84	GO:0019901: protein kinase binding	3.68E-02
85	GO:0005524: ATP binding	3.76E-02
86	GO:0004518: nuclease activity	4.05E-02
87	GO:0030170: pyridoxal phosphate binding	4.10E-02
88	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.21E-02
89	GO:0051015: actin filament binding	4.24E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.30E-02
91	GO:0005200: structural constituent of cytoskeleton	4.62E-02
92	GO:0016491: oxidoreductase activity	4.66E-02
93	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.74E-02
94	GO:0046983: protein dimerization activity	4.76E-02
95	GO:0016597: amino acid binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009941: chloroplast envelope	4.82E-06
2	GO:0000796: condensin complex	3.81E-04
3	GO:0009536: plastid	6.17E-04
4	GO:0031357: integral component of chloroplast inner membrane	8.27E-04
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.27E-04
6	GO:0009534: chloroplast thylakoid	1.13E-03
7	GO:0019897: extrinsic component of plasma membrane	1.34E-03
8	GO:0030139: endocytic vesicle	1.34E-03
9	GO:0009317: acetyl-CoA carboxylase complex	1.34E-03
10	GO:0009528: plastid inner membrane	1.34E-03
11	GO:0009570: chloroplast stroma	1.74E-03
12	GO:0032585: multivesicular body membrane	1.93E-03
13	GO:0009507: chloroplast	2.21E-03
14	GO:0005828: kinetochore microtubule	2.60E-03
15	GO:0009527: plastid outer membrane	2.60E-03
16	GO:0030286: dynein complex	2.60E-03
17	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.60E-03
18	GO:0000776: kinetochore	3.32E-03
19	GO:0005886: plasma membrane	3.42E-03
20	GO:0005871: kinesin complex	3.44E-03
21	GO:0046658: anchored component of plasma membrane	3.84E-03
22	GO:0000793: condensed chromosome	4.11E-03
23	GO:0005655: nucleolar ribonuclease P complex	4.95E-03
24	GO:0000777: condensed chromosome kinetochore	4.95E-03
25	GO:0000815: ESCRT III complex	4.95E-03
26	GO:0010369: chromocenter	4.95E-03
27	GO:0009706: chloroplast inner membrane	5.80E-03
28	GO:0009986: cell surface	5.85E-03
29	GO:0000794: condensed nuclear chromosome	5.85E-03
30	GO:0010319: stromule	6.37E-03
31	GO:0005874: microtubule	6.42E-03
32	GO:0005667: transcription factor complex	8.01E-03
33	GO:0005876: spindle microtubule	9.96E-03
34	GO:0000418: DNA-directed RNA polymerase IV complex	1.11E-02
35	GO:0016459: myosin complex	1.11E-02
36	GO:0090404: pollen tube tip	1.23E-02
37	GO:0005884: actin filament	1.23E-02
38	GO:0043231: intracellular membrane-bounded organelle	1.42E-02
39	GO:0009508: plastid chromosome	1.48E-02
40	GO:0031225: anchored component of membrane	1.91E-02
41	GO:0009532: plastid stroma	2.34E-02
42	GO:0015629: actin cytoskeleton	2.65E-02
43	GO:0009543: chloroplast thylakoid lumen	3.70E-02
44	GO:0009295: nucleoid	4.62E-02