co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010055: atrichoblast differentiation	0.00E+00
2	GO:1902001: fatty acid transmembrane transport	0.00E+00
3	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
4	GO:0097237: cellular response to toxic substance	0.00E+00
5	GO:0015690: aluminum cation transport	0.00E+00
6	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
7	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
8	GO:0002376: immune system process	0.00E+00
9	GO:0018063: cytochrome c-heme linkage	0.00E+00
10	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
11	GO:0000188: inactivation of MAPK activity	0.00E+00
12	GO:0010112: regulation of systemic acquired resistance	1.41E-07
13	GO:0009611: response to wounding	5.32E-07
14	GO:0009617: response to bacterium	2.75E-06
15	GO:0006952: defense response	8.38E-06
16	GO:0042742: defense response to bacterium	1.06E-05
17	GO:1903507: negative regulation of nucleic acid-templated transcription	2.55E-05
18	GO:0050832: defense response to fungus	3.62E-05
19	GO:0010311: lateral root formation	7.13E-05
20	GO:0009407: toxin catabolic process	7.81E-05
21	GO:0055114: oxidation-reduction process	9.33E-05
22	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.24E-04
23	GO:0009636: response to toxic substance	1.94E-04
24	GO:0080173: male-female gamete recognition during double fertilization	2.60E-04
25	GO:0033306: phytol metabolic process	2.60E-04
26	GO:0009700: indole phytoalexin biosynthetic process	2.60E-04
27	GO:0010230: alternative respiration	2.60E-04
28	GO:0034214: protein hexamerization	2.60E-04
29	GO:0032107: regulation of response to nutrient levels	2.60E-04
30	GO:0006979: response to oxidative stress	2.85E-04
31	GO:0009753: response to jasmonic acid	3.05E-04
32	GO:0051607: defense response to virus	4.47E-04
33	GO:0055088: lipid homeostasis	5.74E-04
34	GO:0050684: regulation of mRNA processing	5.74E-04
35	GO:0019521: D-gluconate metabolic process	5.74E-04
36	GO:0019632: shikimate metabolic process	5.74E-04
37	GO:0015908: fatty acid transport	5.74E-04
38	GO:0000719: photoreactive repair	5.74E-04
39	GO:0019725: cellular homeostasis	5.74E-04
40	GO:0071497: cellular response to freezing	5.74E-04
41	GO:0071668: plant-type cell wall assembly	5.74E-04
42	GO:0009838: abscission	5.74E-04
43	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	9.31E-04
44	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	9.31E-04
45	GO:0002230: positive regulation of defense response to virus by host	9.31E-04
46	GO:0032784: regulation of DNA-templated transcription, elongation	9.31E-04
47	GO:0010186: positive regulation of cellular defense response	9.31E-04
48	GO:0010366: negative regulation of ethylene biosynthetic process	9.31E-04
49	GO:0000162: tryptophan biosynthetic process	1.05E-03
50	GO:0051707: response to other organism	1.24E-03
51	GO:0070301: cellular response to hydrogen peroxide	1.33E-03
52	GO:0051289: protein homotetramerization	1.33E-03
53	GO:1902290: positive regulation of defense response to oomycetes	1.33E-03
54	GO:0001676: long-chain fatty acid metabolic process	1.33E-03
55	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.33E-03
56	GO:0016998: cell wall macromolecule catabolic process	1.41E-03
57	GO:0008152: metabolic process	1.43E-03
58	GO:0031347: regulation of defense response	1.58E-03
59	GO:0048638: regulation of developmental growth	1.78E-03
60	GO:0048830: adventitious root development	1.78E-03
61	GO:0006621: protein retention in ER lumen	1.78E-03
62	GO:0010600: regulation of auxin biosynthetic process	1.78E-03
63	GO:1901002: positive regulation of response to salt stress	1.78E-03
64	GO:0010188: response to microbial phytotoxin	1.78E-03
65	GO:1901141: regulation of lignin biosynthetic process	1.78E-03
66	GO:0060548: negative regulation of cell death	1.78E-03
67	GO:0042391: regulation of membrane potential	2.13E-03
68	GO:0010225: response to UV-C	2.27E-03
69	GO:0000304: response to singlet oxygen	2.27E-03
70	GO:0009164: nucleoside catabolic process	2.27E-03
71	GO:0031365: N-terminal protein amino acid modification	2.27E-03
72	GO:0006623: protein targeting to vacuole	2.64E-03
73	GO:0010256: endomembrane system organization	2.80E-03
74	GO:0009117: nucleotide metabolic process	2.80E-03
75	GO:0002238: response to molecule of fungal origin	2.80E-03
76	GO:0009759: indole glucosinolate biosynthetic process	2.80E-03
77	GO:0042372: phylloquinone biosynthetic process	3.36E-03
78	GO:0009094: L-phenylalanine biosynthetic process	3.36E-03
79	GO:0009423: chorismate biosynthetic process	3.36E-03
80	GO:1900056: negative regulation of leaf senescence	3.97E-03
81	GO:0080186: developmental vegetative growth	3.97E-03
82	GO:1900057: positive regulation of leaf senescence	3.97E-03
83	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.97E-03
84	GO:1902074: response to salt	3.97E-03
85	GO:0009627: systemic acquired resistance	4.56E-03
86	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.60E-03
87	GO:0030091: protein repair	4.60E-03
88	GO:0043068: positive regulation of programmed cell death	4.60E-03
89	GO:0009751: response to salicylic acid	5.07E-03
90	GO:0009651: response to salt stress	5.22E-03
91	GO:0009737: response to abscisic acid	5.25E-03
92	GO:0009699: phenylpropanoid biosynthetic process	5.27E-03
93	GO:0010120: camalexin biosynthetic process	5.27E-03
94	GO:0006997: nucleus organization	5.27E-03
95	GO:0010204: defense response signaling pathway, resistance gene-independent	5.27E-03
96	GO:0030968: endoplasmic reticulum unfolded protein response	5.27E-03
97	GO:0017004: cytochrome complex assembly	5.27E-03
98	GO:0010208: pollen wall assembly	5.27E-03
99	GO:0009813: flavonoid biosynthetic process	5.59E-03
100	GO:0046685: response to arsenic-containing substance	5.98E-03
101	GO:0006098: pentose-phosphate shunt	5.98E-03
102	GO:0051865: protein autoubiquitination	5.98E-03
103	GO:0019432: triglyceride biosynthetic process	5.98E-03
104	GO:0009835: fruit ripening	5.98E-03
105	GO:0048527: lateral root development	6.15E-03
106	GO:0007568: aging	6.15E-03
107	GO:0009638: phototropism	6.71E-03
108	GO:0090332: stomatal closure	6.71E-03
109	GO:1900426: positive regulation of defense response to bacterium	6.71E-03
110	GO:0019538: protein metabolic process	7.47E-03
111	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.47E-03
112	GO:0006032: chitin catabolic process	7.47E-03
113	GO:0009641: shade avoidance	7.47E-03
114	GO:0046686: response to cadmium ion	8.18E-03
115	GO:0009682: induced systemic resistance	8.27E-03
116	GO:0052544: defense response by callose deposition in cell wall	8.27E-03
117	GO:0009073: aromatic amino acid family biosynthetic process	8.27E-03
118	GO:0048229: gametophyte development	8.27E-03
119	GO:0009684: indoleacetic acid biosynthetic process	8.27E-03
120	GO:0012501: programmed cell death	9.09E-03
121	GO:0002213: defense response to insect	9.09E-03
122	GO:0009785: blue light signaling pathway	9.94E-03
123	GO:2000028: regulation of photoperiodism, flowering	9.94E-03
124	GO:0002237: response to molecule of bacterial origin	1.08E-02
125	GO:0006812: cation transport	1.09E-02
126	GO:0042343: indole glucosinolate metabolic process	1.17E-02
127	GO:0006813: potassium ion transport	1.18E-02
128	GO:0009723: response to ethylene	1.19E-02
129	GO:0080167: response to karrikin	1.30E-02
130	GO:0080147: root hair cell development	1.36E-02
131	GO:0051302: regulation of cell division	1.46E-02
132	GO:0006874: cellular calcium ion homeostasis	1.46E-02
133	GO:0043622: cortical microtubule organization	1.46E-02
134	GO:0009695: jasmonic acid biosynthetic process	1.46E-02
135	GO:0009626: plant-type hypersensitive response	1.48E-02
136	GO:0098542: defense response to other organism	1.56E-02
137	GO:0071456: cellular response to hypoxia	1.67E-02
138	GO:0009693: ethylene biosynthetic process	1.77E-02
139	GO:0009411: response to UV	1.77E-02
140	GO:0009625: response to insect	1.77E-02
141	GO:0006012: galactose metabolic process	1.77E-02
142	GO:0070417: cellular response to cold	1.99E-02
143	GO:0008284: positive regulation of cell proliferation	1.99E-02
144	GO:0000413: protein peptidyl-prolyl isomerization	2.11E-02
145	GO:0006885: regulation of pH	2.22E-02
146	GO:0006520: cellular amino acid metabolic process	2.22E-02
147	GO:0006662: glycerol ether metabolic process	2.22E-02
148	GO:0046323: glucose import	2.22E-02
149	GO:0009646: response to absence of light	2.34E-02
150	GO:0006814: sodium ion transport	2.34E-02
151	GO:0009851: auxin biosynthetic process	2.46E-02
152	GO:0000302: response to reactive oxygen species	2.58E-02
153	GO:0006635: fatty acid beta-oxidation	2.58E-02
154	GO:0009630: gravitropism	2.70E-02
155	GO:0040008: regulation of growth	2.77E-02
156	GO:1901657: glycosyl compound metabolic process	2.83E-02
157	GO:0010150: leaf senescence	2.90E-02
158	GO:0019760: glucosinolate metabolic process	2.96E-02
159	GO:0007166: cell surface receptor signaling pathway	3.32E-02
160	GO:0009615: response to virus	3.35E-02
161	GO:0009414: response to water deprivation	3.40E-02
162	GO:0009816: defense response to bacterium, incompatible interaction	3.49E-02
163	GO:0006950: response to stress	3.77E-02
164	GO:0007165: signal transduction	3.90E-02
165	GO:0009817: defense response to fungus, incompatible interaction	4.05E-02
166	GO:0009555: pollen development	4.35E-02
167	GO:0010043: response to zinc ion	4.49E-02
168	GO:0009867: jasmonic acid mediated signaling pathway	4.79E-02
169	GO:0006970: response to osmotic stress	4.81E-02
170	GO:0034599: cellular response to oxidative stress	4.94E-02
171	GO:0015031: protein transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:2001227: quercitrin binding	0.00E+00
2	GO:0051670: inulinase activity	0.00E+00
3	GO:0004764: shikimate 3-dehydrogenase (NADP+) activity	0.00E+00
4	GO:0004610: phosphoacetylglucosamine mutase activity	0.00E+00
5	GO:0047681: aryl-alcohol dehydrogenase (NADP+) activity	0.00E+00
6	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
7	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
8	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
9	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
10	GO:0003855: 3-dehydroquinate dehydratase activity	0.00E+00
11	GO:2001147: camalexin binding	0.00E+00
12	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
13	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
14	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
15	GO:0003714: transcription corepressor activity	8.09E-05
16	GO:0004364: glutathione transferase activity	1.48E-04
17	GO:0043295: glutathione binding	1.93E-04
18	GO:0004033: aldo-keto reductase (NADP) activity	2.45E-04
19	GO:0070401: NADP+ binding	2.60E-04
20	GO:0051669: fructan beta-fructosidase activity	2.60E-04
21	GO:0000386: second spliceosomal transesterification activity	2.60E-04
22	GO:0031219: levanase activity	2.60E-04
23	GO:0015168: glycerol transmembrane transporter activity	2.60E-04
24	GO:0015245: fatty acid transporter activity	2.60E-04
25	GO:0090353: polygalacturonase inhibitor activity	2.60E-04
26	GO:0016229: steroid dehydrogenase activity	2.60E-04
27	GO:0010179: IAA-Ala conjugate hydrolase activity	2.60E-04
28	GO:0004385: guanylate kinase activity	5.74E-04
29	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	9.31E-04
30	GO:0004049: anthranilate synthase activity	9.31E-04
31	GO:0030553: cGMP binding	9.50E-04
32	GO:0030552: cAMP binding	9.50E-04
33	GO:0050661: NADP binding	1.07E-03
34	GO:0005216: ion channel activity	1.28E-03
35	GO:0005354: galactose transmembrane transporter activity	1.33E-03
36	GO:0005432: calcium:sodium antiporter activity	1.33E-03
37	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.33E-03
38	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.33E-03
39	GO:0046923: ER retention sequence binding	1.78E-03
40	GO:0003995: acyl-CoA dehydrogenase activity	1.78E-03
41	GO:0009916: alternative oxidase activity	1.78E-03
42	GO:0047769: arogenate dehydratase activity	1.78E-03
43	GO:0004664: prephenate dehydratase activity	1.78E-03
44	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.82E-03
45	GO:0030551: cyclic nucleotide binding	2.13E-03
46	GO:0005249: voltage-gated potassium channel activity	2.13E-03
47	GO:0015145: monosaccharide transmembrane transporter activity	2.27E-03
48	GO:0018685: alkane 1-monooxygenase activity	2.27E-03
49	GO:0003997: acyl-CoA oxidase activity	2.27E-03
50	GO:0008200: ion channel inhibitor activity	2.80E-03
51	GO:0004497: monooxygenase activity	2.86E-03
52	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.36E-03
53	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	3.36E-03
54	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.36E-03
55	GO:0004144: diacylglycerol O-acyltransferase activity	3.36E-03
56	GO:0003978: UDP-glucose 4-epimerase activity	3.36E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	3.36E-03
58	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.36E-03
59	GO:0051920: peroxiredoxin activity	3.36E-03
60	GO:0008237: metallopeptidase activity	3.64E-03
61	GO:0008235: metalloexopeptidase activity	3.97E-03
62	GO:0008320: protein transmembrane transporter activity	3.97E-03
63	GO:0051213: dioxygenase activity	4.08E-03
64	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.60E-03
65	GO:0052747: sinapyl alcohol dehydrogenase activity	4.60E-03
66	GO:0005544: calcium-dependent phospholipid binding	4.60E-03
67	GO:0015491: cation:cation antiporter activity	4.60E-03
68	GO:0016209: antioxidant activity	4.60E-03
69	GO:0004806: triglyceride lipase activity	4.80E-03
70	GO:0016207: 4-coumarate-CoA ligase activity	5.98E-03
71	GO:0071949: FAD binding	5.98E-03
72	GO:0047617: acyl-CoA hydrolase activity	6.71E-03
73	GO:0004568: chitinase activity	7.47E-03
74	GO:0004177: aminopeptidase activity	8.27E-03
75	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.09E-03
76	GO:0031072: heat shock protein binding	9.94E-03
77	GO:0004970: ionotropic glutamate receptor activity	1.17E-02
78	GO:0005217: intracellular ligand-gated ion channel activity	1.17E-02
79	GO:0004867: serine-type endopeptidase inhibitor activity	1.17E-02
80	GO:0050660: flavin adenine dinucleotide binding	1.19E-02
81	GO:0016301: kinase activity	1.19E-02
82	GO:0004725: protein tyrosine phosphatase activity	1.27E-02
83	GO:0001046: core promoter sequence-specific DNA binding	1.36E-02
84	GO:0016787: hydrolase activity	1.51E-02
85	GO:0015035: protein disulfide oxidoreductase activity	1.73E-02
86	GO:0004871: signal transducer activity	1.74E-02
87	GO:0042803: protein homodimerization activity	1.74E-02
88	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.81E-02
89	GO:0003727: single-stranded RNA binding	1.88E-02
90	GO:0047134: protein-disulfide reductase activity	1.99E-02
91	GO:0019825: oxygen binding	2.10E-02
92	GO:0005451: monovalent cation:proton antiporter activity	2.11E-02
93	GO:0005516: calmodulin binding	2.28E-02
94	GO:0030170: pyridoxal phosphate binding	2.33E-02
95	GO:0015299: solute:proton antiporter activity	2.34E-02
96	GO:0005355: glucose transmembrane transporter activity	2.34E-02
97	GO:0004791: thioredoxin-disulfide reductase activity	2.34E-02
98	GO:0004872: receptor activity	2.46E-02
99	GO:0020037: heme binding	2.46E-02
100	GO:0015385: sodium:proton antiporter activity	2.83E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.83E-02
102	GO:0016791: phosphatase activity	2.96E-02
103	GO:0004674: protein serine/threonine kinase activity	3.06E-02
104	GO:0008483: transaminase activity	3.09E-02
105	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.09E-02
106	GO:0005509: calcium ion binding	3.13E-02
107	GO:0016597: amino acid binding	3.22E-02
108	GO:0008194: UDP-glycosyltransferase activity	3.25E-02
109	GO:0005506: iron ion binding	3.44E-02
110	GO:0016887: ATPase activity	3.68E-02
111	GO:0102483: scopolin beta-glucosidase activity	3.77E-02
112	GO:0004721: phosphoprotein phosphatase activity	3.77E-02
113	GO:0030247: polysaccharide binding	3.77E-02
114	GO:0004683: calmodulin-dependent protein kinase activity	3.77E-02
115	GO:0003824: catalytic activity	4.03E-02
116	GO:0005096: GTPase activator activity	4.20E-02
117	GO:0004222: metalloendopeptidase activity	4.34E-02
118	GO:0004601: peroxidase activity	4.48E-02
119	GO:0050897: cobalt ion binding	4.49E-02
120	GO:0030145: manganese ion binding	4.49E-02
121	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005950: anthranilate synthase complex	5.74E-04
3	GO:0016021: integral component of membrane	1.35E-03
4	GO:0005886: plasma membrane	2.11E-03
5	GO:0031965: nuclear membrane	2.64E-03
6	GO:0005788: endoplasmic reticulum lumen	4.32E-03
7	GO:0005794: Golgi apparatus	6.85E-03
8	GO:0031225: anchored component of membrane	7.18E-03
9	GO:0017119: Golgi transport complex	7.47E-03
10	GO:0046658: anchored component of plasma membrane	8.12E-03
11	GO:0031012: extracellular matrix	9.94E-03
12	GO:0005783: endoplasmic reticulum	1.21E-02
13	GO:0070469: respiratory chain	1.46E-02
14	GO:0005770: late endosome	2.22E-02
15	GO:0005789: endoplasmic reticulum membrane	2.33E-02
16	GO:0043231: intracellular membrane-bounded organelle	2.41E-02
17	GO:0009504: cell plate	2.46E-02
18	GO:0005802: trans-Golgi network	2.50E-02
19	GO:0005768: endosome	3.02E-02
20	GO:0005887: integral component of plasma membrane	3.13E-02
21	GO:0005829: cytosol	4.38E-02
22	GO:0009505: plant-type cell wall	4.87E-02