GO Enrichment Analysis of Co-expressed Genes with
AT4G25450
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 2 | GO:0006066: alcohol metabolic process | 0.00E+00 |
| 3 | GO:0055114: oxidation-reduction process | 2.26E-05 |
| 4 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 7.58E-05 |
| 5 | GO:0010028: xanthophyll cycle | 7.58E-05 |
| 6 | GO:0034337: RNA folding | 7.58E-05 |
| 7 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 7.58E-05 |
| 8 | GO:0000476: maturation of 4.5S rRNA | 7.58E-05 |
| 9 | GO:0000967: rRNA 5'-end processing | 7.58E-05 |
| 10 | GO:0009090: homoserine biosynthetic process | 7.58E-05 |
| 11 | GO:0031537: regulation of anthocyanin metabolic process | 1.81E-04 |
| 12 | GO:1900033: negative regulation of trichome patterning | 1.81E-04 |
| 13 | GO:0016122: xanthophyll metabolic process | 1.81E-04 |
| 14 | GO:0015804: neutral amino acid transport | 1.81E-04 |
| 15 | GO:0034470: ncRNA processing | 1.81E-04 |
| 16 | GO:0006898: receptor-mediated endocytosis | 1.81E-04 |
| 17 | GO:0019748: secondary metabolic process | 2.96E-04 |
| 18 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 3.05E-04 |
| 19 | GO:0009067: aspartate family amino acid biosynthetic process | 4.41E-04 |
| 20 | GO:0006020: inositol metabolic process | 4.41E-04 |
| 21 | GO:0006164: purine nucleotide biosynthetic process | 4.41E-04 |
| 22 | GO:0071483: cellular response to blue light | 5.87E-04 |
| 23 | GO:0010021: amylopectin biosynthetic process | 5.87E-04 |
| 24 | GO:0006109: regulation of carbohydrate metabolic process | 5.87E-04 |
| 25 | GO:0015994: chlorophyll metabolic process | 5.87E-04 |
| 26 | GO:0006021: inositol biosynthetic process | 5.87E-04 |
| 27 | GO:0009904: chloroplast accumulation movement | 7.44E-04 |
| 28 | GO:0006656: phosphatidylcholine biosynthetic process | 7.44E-04 |
| 29 | GO:0071368: cellular response to cytokinin stimulus | 7.44E-04 |
| 30 | GO:0009643: photosynthetic acclimation | 9.07E-04 |
| 31 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 9.07E-04 |
| 32 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 9.07E-04 |
| 33 | GO:0046855: inositol phosphate dephosphorylation | 9.07E-04 |
| 34 | GO:0015995: chlorophyll biosynthetic process | 9.08E-04 |
| 35 | GO:0009903: chloroplast avoidance movement | 1.08E-03 |
| 36 | GO:0080113: regulation of seed growth | 1.08E-03 |
| 37 | GO:0009088: threonine biosynthetic process | 1.08E-03 |
| 38 | GO:0080036: regulation of cytokinin-activated signaling pathway | 1.08E-03 |
| 39 | GO:1901259: chloroplast rRNA processing | 1.08E-03 |
| 40 | GO:0010196: nonphotochemical quenching | 1.26E-03 |
| 41 | GO:0005978: glycogen biosynthetic process | 1.46E-03 |
| 42 | GO:0009642: response to light intensity | 1.46E-03 |
| 43 | GO:0006353: DNA-templated transcription, termination | 1.46E-03 |
| 44 | GO:0015996: chlorophyll catabolic process | 1.66E-03 |
| 45 | GO:0006189: 'de novo' IMP biosynthetic process | 1.87E-03 |
| 46 | GO:0005982: starch metabolic process | 2.09E-03 |
| 47 | GO:0009086: methionine biosynthetic process | 2.09E-03 |
| 48 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.09E-03 |
| 49 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.09E-03 |
| 50 | GO:0006813: potassium ion transport | 2.14E-03 |
| 51 | GO:0009641: shade avoidance | 2.32E-03 |
| 52 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.56E-03 |
| 53 | GO:0043085: positive regulation of catalytic activity | 2.56E-03 |
| 54 | GO:0006790: sulfur compound metabolic process | 2.80E-03 |
| 55 | GO:0018107: peptidyl-threonine phosphorylation | 3.06E-03 |
| 56 | GO:0007015: actin filament organization | 3.32E-03 |
| 57 | GO:0010223: secondary shoot formation | 3.32E-03 |
| 58 | GO:0046854: phosphatidylinositol phosphorylation | 3.59E-03 |
| 59 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.86E-03 |
| 60 | GO:0080147: root hair cell development | 4.15E-03 |
| 61 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.43E-03 |
| 62 | GO:0003333: amino acid transmembrane transport | 4.73E-03 |
| 63 | GO:0051260: protein homooligomerization | 4.73E-03 |
| 64 | GO:0061077: chaperone-mediated protein folding | 4.73E-03 |
| 65 | GO:0016114: terpenoid biosynthetic process | 4.73E-03 |
| 66 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.34E-03 |
| 67 | GO:0010082: regulation of root meristem growth | 5.34E-03 |
| 68 | GO:0080022: primary root development | 6.31E-03 |
| 69 | GO:0006662: glycerol ether metabolic process | 6.64E-03 |
| 70 | GO:0019252: starch biosynthetic process | 7.34E-03 |
| 71 | GO:1901657: glycosyl compound metabolic process | 8.42E-03 |
| 72 | GO:0009828: plant-type cell wall loosening | 8.79E-03 |
| 73 | GO:0006906: vesicle fusion | 1.07E-02 |
| 74 | GO:0044550: secondary metabolite biosynthetic process | 1.09E-02 |
| 75 | GO:0015979: photosynthesis | 1.14E-02 |
| 76 | GO:0045454: cell redox homeostasis | 1.20E-02 |
| 77 | GO:0000160: phosphorelay signal transduction system | 1.24E-02 |
| 78 | GO:0009813: flavonoid biosynthetic process | 1.24E-02 |
| 79 | GO:0007568: aging | 1.33E-02 |
| 80 | GO:0006865: amino acid transport | 1.37E-02 |
| 81 | GO:0032259: methylation | 1.42E-02 |
| 82 | GO:0034599: cellular response to oxidative stress | 1.46E-02 |
| 83 | GO:0009408: response to heat | 1.48E-02 |
| 84 | GO:0006887: exocytosis | 1.60E-02 |
| 85 | GO:0006631: fatty acid metabolic process | 1.60E-02 |
| 86 | GO:0009664: plant-type cell wall organization | 1.99E-02 |
| 87 | GO:0009734: auxin-activated signaling pathway | 2.09E-02 |
| 88 | GO:0009736: cytokinin-activated signaling pathway | 2.10E-02 |
| 89 | GO:0010224: response to UV-B | 2.15E-02 |
| 90 | GO:0043086: negative regulation of catalytic activity | 2.36E-02 |
| 91 | GO:0009735: response to cytokinin | 2.41E-02 |
| 92 | GO:0048367: shoot system development | 2.42E-02 |
| 93 | GO:0009553: embryo sac development | 2.64E-02 |
| 94 | GO:0006396: RNA processing | 2.75E-02 |
| 95 | GO:0018105: peptidyl-serine phosphorylation | 2.75E-02 |
| 96 | GO:0006633: fatty acid biosynthetic process | 3.72E-02 |
| 97 | GO:0045490: pectin catabolic process | 3.98E-02 |
| 98 | GO:0006508: proteolysis | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 2 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0046577: long-chain-alcohol oxidase activity | 0.00E+00 |
| 5 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 6 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 7 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 8 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 9 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 10 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 11 | GO:0016491: oxidoreductase activity | 2.48E-05 |
| 12 | GO:0034256: chlorophyll(ide) b reductase activity | 7.58E-05 |
| 13 | GO:0045486: naringenin 3-dioxygenase activity | 7.58E-05 |
| 14 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 7.58E-05 |
| 15 | GO:0080079: cellobiose glucosidase activity | 7.58E-05 |
| 16 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 7.58E-05 |
| 17 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 7.58E-05 |
| 18 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 1.81E-04 |
| 19 | GO:0015172: acidic amino acid transmembrane transporter activity | 1.81E-04 |
| 20 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.81E-04 |
| 21 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 1.81E-04 |
| 22 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.81E-04 |
| 23 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.81E-04 |
| 24 | GO:0004412: homoserine dehydrogenase activity | 1.81E-04 |
| 25 | GO:0008967: phosphoglycolate phosphatase activity | 1.81E-04 |
| 26 | GO:0018708: thiol S-methyltransferase activity | 1.81E-04 |
| 27 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 1.81E-04 |
| 28 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.05E-04 |
| 29 | GO:0043169: cation binding | 3.05E-04 |
| 30 | GO:0004072: aspartate kinase activity | 4.41E-04 |
| 31 | GO:0019201: nucleotide kinase activity | 4.41E-04 |
| 32 | GO:0015175: neutral amino acid transmembrane transporter activity | 4.41E-04 |
| 33 | GO:0016851: magnesium chelatase activity | 4.41E-04 |
| 34 | GO:0022890: inorganic cation transmembrane transporter activity | 4.41E-04 |
| 35 | GO:0004602: glutathione peroxidase activity | 1.08E-03 |
| 36 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.08E-03 |
| 37 | GO:0004017: adenylate kinase activity | 1.08E-03 |
| 38 | GO:0004525: ribonuclease III activity | 1.46E-03 |
| 39 | GO:0004033: aldo-keto reductase (NADP) activity | 1.46E-03 |
| 40 | GO:0004185: serine-type carboxypeptidase activity | 1.60E-03 |
| 41 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.66E-03 |
| 42 | GO:0071949: FAD binding | 1.87E-03 |
| 43 | GO:0008047: enzyme activator activity | 2.32E-03 |
| 44 | GO:0008327: methyl-CpG binding | 2.56E-03 |
| 45 | GO:0047372: acylglycerol lipase activity | 2.56E-03 |
| 46 | GO:0015386: potassium:proton antiporter activity | 2.56E-03 |
| 47 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.61E-03 |
| 48 | GO:0031072: heat shock protein binding | 3.06E-03 |
| 49 | GO:0004535: poly(A)-specific ribonuclease activity | 3.32E-03 |
| 50 | GO:0031409: pigment binding | 3.86E-03 |
| 51 | GO:0031418: L-ascorbic acid binding | 4.15E-03 |
| 52 | GO:0004857: enzyme inhibitor activity | 4.15E-03 |
| 53 | GO:0005528: FK506 binding | 4.15E-03 |
| 54 | GO:0015079: potassium ion transmembrane transporter activity | 4.43E-03 |
| 55 | GO:0016779: nucleotidyltransferase activity | 5.03E-03 |
| 56 | GO:0030570: pectate lyase activity | 5.34E-03 |
| 57 | GO:0047134: protein-disulfide reductase activity | 5.98E-03 |
| 58 | GO:0005249: voltage-gated potassium channel activity | 6.31E-03 |
| 59 | GO:0004791: thioredoxin-disulfide reductase activity | 6.99E-03 |
| 60 | GO:0015299: solute:proton antiporter activity | 6.99E-03 |
| 61 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.42E-03 |
| 62 | GO:0000156: phosphorelay response regulator activity | 8.42E-03 |
| 63 | GO:0016597: amino acid binding | 9.56E-03 |
| 64 | GO:0016168: chlorophyll binding | 1.03E-02 |
| 65 | GO:0102483: scopolin beta-glucosidase activity | 1.12E-02 |
| 66 | GO:0008236: serine-type peptidase activity | 1.16E-02 |
| 67 | GO:0044212: transcription regulatory region DNA binding | 1.23E-02 |
| 68 | GO:0003746: translation elongation factor activity | 1.42E-02 |
| 69 | GO:0003993: acid phosphatase activity | 1.46E-02 |
| 70 | GO:0000149: SNARE binding | 1.51E-02 |
| 71 | GO:0008422: beta-glucosidase activity | 1.51E-02 |
| 72 | GO:0050661: NADP binding | 1.55E-02 |
| 73 | GO:0005484: SNAP receptor activity | 1.70E-02 |
| 74 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.79E-02 |
| 75 | GO:0015293: symporter activity | 1.84E-02 |
| 76 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.89E-02 |
| 77 | GO:0003723: RNA binding | 1.97E-02 |
| 78 | GO:0015171: amino acid transmembrane transporter activity | 2.25E-02 |
| 79 | GO:0051082: unfolded protein binding | 2.69E-02 |
| 80 | GO:0015035: protein disulfide oxidoreductase activity | 2.75E-02 |
| 81 | GO:0019843: rRNA binding | 3.16E-02 |
| 82 | GO:0016787: hydrolase activity | 3.19E-02 |
| 83 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.22E-02 |
| 84 | GO:0016829: lyase activity | 3.34E-02 |
| 85 | GO:0004252: serine-type endopeptidase activity | 3.41E-02 |
| 86 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.47E-02 |
| 87 | GO:0005525: GTP binding | 4.31E-02 |
| 88 | GO:0042802: identical protein binding | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.08E-16 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 5.23E-11 |
| 3 | GO:0009570: chloroplast stroma | 2.94E-07 |
| 4 | GO:0009534: chloroplast thylakoid | 1.98E-06 |
| 5 | GO:0009941: chloroplast envelope | 1.61E-04 |
| 6 | GO:0042651: thylakoid membrane | 2.44E-04 |
| 7 | GO:0010007: magnesium chelatase complex | 3.05E-04 |
| 8 | GO:0008076: voltage-gated potassium channel complex | 4.41E-04 |
| 9 | GO:0009501: amyloplast | 1.46E-03 |
| 10 | GO:0031982: vesicle | 1.46E-03 |
| 11 | GO:0031977: thylakoid lumen | 1.48E-03 |
| 12 | GO:0031901: early endosome membrane | 1.87E-03 |
| 13 | GO:0032040: small-subunit processome | 2.80E-03 |
| 14 | GO:0009706: chloroplast inner membrane | 3.03E-03 |
| 15 | GO:0030095: chloroplast photosystem II | 3.32E-03 |
| 16 | GO:0030076: light-harvesting complex | 3.59E-03 |
| 17 | GO:0010287: plastoglobule | 3.59E-03 |
| 18 | GO:0009543: chloroplast thylakoid lumen | 3.79E-03 |
| 19 | GO:0015935: small ribosomal subunit | 4.73E-03 |
| 20 | GO:0031201: SNARE complex | 1.60E-02 |
| 21 | GO:0005623: cell | 3.22E-02 |
| 22 | GO:0005759: mitochondrial matrix | 3.72E-02 |