co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G25050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:0015979: photosynthesis	9.38E-16
3	GO:0009768: photosynthesis, light harvesting in photosystem I	1.11E-07
4	GO:0015995: chlorophyll biosynthetic process	1.30E-06
5	GO:0018298: protein-chromophore linkage	1.56E-06
6	GO:0010196: nonphotochemical quenching	1.62E-06
7	GO:0010218: response to far red light	1.86E-06
8	GO:0009637: response to blue light	2.38E-06
9	GO:0010114: response to red light	3.72E-06
10	GO:0019510: S-adenosylhomocysteine catabolic process	1.30E-05
11	GO:0033353: S-adenosylmethionine cycle	3.42E-05
12	GO:0090391: granum assembly	6.16E-05
13	GO:0006081: cellular aldehyde metabolic process	6.16E-05
14	GO:0015976: carbon utilization	1.30E-04
15	GO:2000122: negative regulation of stomatal complex development	1.30E-04
16	GO:0010037: response to carbon dioxide	1.30E-04
17	GO:0010206: photosystem II repair	4.45E-04
18	GO:0010205: photoinhibition	4.96E-04
19	GO:0042761: very long-chain fatty acid biosynthetic process	4.96E-04
20	GO:0009773: photosynthetic electron transport in photosystem I	6.03E-04
21	GO:0072593: reactive oxygen species metabolic process	6.03E-04
22	GO:0045037: protein import into chloroplast stroma	6.58E-04
23	GO:0010207: photosystem II assembly	7.72E-04
24	GO:0010025: wax biosynthetic process	8.91E-04
25	GO:0009658: chloroplast organization	9.07E-04
26	GO:0030150: protein import into mitochondrial matrix	9.51E-04
27	GO:0006730: one-carbon metabolic process	1.14E-03
28	GO:0055072: iron ion homeostasis	1.63E-03
29	GO:0009749: response to glucose	1.63E-03
30	GO:0010027: thylakoid membrane organization	2.18E-03
31	GO:0009735: response to cytokinin	2.59E-03
32	GO:0009817: defense response to fungus, incompatible interaction	2.61E-03
33	GO:0010119: regulation of stomatal movement	2.87E-03
34	GO:0009744: response to sucrose	3.63E-03
35	GO:0009409: response to cold	7.68E-03
36	GO:0010150: leaf senescence	8.26E-03
37	GO:0009723: response to ethylene	1.24E-02
38	GO:0080167: response to karrikin	1.31E-02
39	GO:0045454: cell redox homeostasis	1.48E-02
40	GO:0006869: lipid transport	1.58E-02
41	GO:0016042: lipid catabolic process	1.69E-02
42	GO:0009753: response to jasmonic acid	1.81E-02
43	GO:0009555: pollen development	2.59E-02
44	GO:0009611: response to wounding	2.63E-02
45	GO:0045893: positive regulation of transcription, DNA-templated	2.86E-02
46	GO:0071555: cell wall organization	4.29E-02
47	GO:0042742: defense response to bacterium	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0031409: pigment binding	7.59E-08
3	GO:0016168: chlorophyll binding	1.07E-06
4	GO:0004013: adenosylhomocysteinase activity	1.30E-05
5	GO:0016630: protochlorophyllide reductase activity	3.42E-05
6	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	6.16E-05
7	GO:0016851: magnesium chelatase activity	9.36E-05
8	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.10E-04
9	GO:0015288: porin activity	3.46E-04
10	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.96E-04
11	GO:0004089: carbonate dehydratase activity	7.14E-04
12	GO:0031072: heat shock protein binding	7.14E-04
13	GO:0015266: protein channel activity	7.14E-04
14	GO:0016788: hydrolase activity, acting on ester bonds	9.22E-04
15	GO:0003756: protein disulfide isomerase activity	1.27E-03
16	GO:0046872: metal ion binding	1.33E-03
17	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.61E-03
18	GO:0030145: manganese ion binding	2.87E-03
19	GO:0051537: 2 iron, 2 sulfur cluster binding	3.82E-03
20	GO:0051287: NAD binding	4.13E-03
21	GO:0015171: amino acid transmembrane transporter activity	4.76E-03
22	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	5.09E-03
23	GO:0051082: unfolded protein binding	5.66E-03
24	GO:0052689: carboxylic ester hydrolase activity	1.40E-02
25	GO:0008289: lipid binding	2.18E-02
26	GO:0016740: transferase activity	2.99E-02
27	GO:0005515: protein binding	3.57E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0034426: etioplast membrane	0.00E+00
3	GO:0009534: chloroplast thylakoid	8.33E-22
4	GO:0009535: chloroplast thylakoid membrane	5.53E-20
5	GO:0009579: thylakoid	1.21E-17
6	GO:0009507: chloroplast	4.48E-15
7	GO:0009941: chloroplast envelope	1.08E-12
8	GO:0010287: plastoglobule	2.55E-09
9	GO:0009522: photosystem I	3.83E-07
10	GO:0009523: photosystem II	4.36E-07
11	GO:0009533: chloroplast stromal thylakoid	1.62E-06
12	GO:0009538: photosystem I reaction center	2.20E-06
13	GO:0016020: membrane	3.52E-06
14	GO:0009783: photosystem II antenna complex	1.30E-05
15	GO:0009515: granal stacked thylakoid	1.30E-05
16	GO:0030076: light-harvesting complex	1.32E-05
17	GO:0030093: chloroplast photosystem I	3.42E-05
18	GO:0010007: magnesium chelatase complex	6.16E-05
19	GO:0009707: chloroplast outer membrane	1.06E-04
20	GO:0009527: plastid outer membrane	1.30E-04
21	GO:0009517: PSII associated light-harvesting complex II	1.30E-04
22	GO:0031305: integral component of mitochondrial inner membrane	3.46E-04
23	GO:0009706: chloroplast inner membrane	3.52E-04
24	GO:0046930: pore complex	3.94E-04
25	GO:0009543: chloroplast thylakoid lumen	4.38E-04
26	GO:0009508: plastid chromosome	7.14E-04
27	GO:0030095: chloroplast photosystem II	7.72E-04
28	GO:0042651: thylakoid membrane	1.01E-03
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.27E-03
30	GO:0009570: chloroplast stroma	1.43E-03
31	GO:0010319: stromule	2.02E-03
32	GO:0009295: nucleoid	2.02E-03
33	GO:0031977: thylakoid lumen	3.43E-03
34	GO:0005783: endoplasmic reticulum	8.22E-03
35	GO:0016021: integral component of membrane	1.44E-02
36	GO:0005773: vacuole	3.03E-02
37	GO:0031225: anchored component of membrane	3.56E-02
38	GO:0009536: plastid	4.95E-02