Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G24920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902289: negative regulation of defense response to oomycetes0.00E+00
2GO:0005993: trehalose catabolic process0.00E+00
3GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
4GO:0052386: cell wall thickening0.00E+00
5GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress0.00E+00
6GO:0010401: pectic galactan metabolic process0.00E+00
7GO:0006983: ER overload response0.00E+00
8GO:1902009: positive regulation of toxin transport0.00E+00
9GO:0051553: flavone biosynthetic process0.00E+00
10GO:2000068: regulation of defense response to insect0.00E+00
11GO:0006654: phosphatidic acid biosynthetic process0.00E+00
12GO:0015012: heparan sulfate proteoglycan biosynthetic process1.05E-06
13GO:0006024: glycosaminoglycan biosynthetic process1.05E-06
14GO:0030150: protein import into mitochondrial matrix2.25E-05
15GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.02E-04
16GO:0006102: isocitrate metabolic process1.02E-04
17GO:1990641: response to iron ion starvation1.46E-04
18GO:0051090: regulation of sequence-specific DNA binding transcription factor activity1.46E-04
19GO:0050691: regulation of defense response to virus by host1.46E-04
20GO:0016337: single organismal cell-cell adhesion1.46E-04
21GO:0008202: steroid metabolic process1.88E-04
22GO:0052541: plant-type cell wall cellulose metabolic process3.33E-04
23GO:0006101: citrate metabolic process3.33E-04
24GO:0043066: negative regulation of apoptotic process3.33E-04
25GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine3.33E-04
26GO:0080151: positive regulation of salicylic acid mediated signaling pathway3.33E-04
27GO:0006568: tryptophan metabolic process3.33E-04
28GO:0006099: tricarboxylic acid cycle3.40E-04
29GO:0002237: response to molecule of bacterial origin3.85E-04
30GO:0006631: fatty acid metabolic process4.02E-04
31GO:0080163: regulation of protein serine/threonine phosphatase activity5.47E-04
32GO:0071398: cellular response to fatty acid5.47E-04
33GO:0032504: multicellular organism reproduction5.47E-04
34GO:0010476: gibberellin mediated signaling pathway5.47E-04
35GO:0010325: raffinose family oligosaccharide biosynthetic process5.47E-04
36GO:0009410: response to xenobiotic stimulus5.47E-04
37GO:0002239: response to oomycetes7.83E-04
38GO:0072334: UDP-galactose transmembrane transport7.83E-04
39GO:0009963: positive regulation of flavonoid biosynthetic process7.83E-04
40GO:0055070: copper ion homeostasis7.83E-04
41GO:0001676: long-chain fatty acid metabolic process7.83E-04
42GO:0009620: response to fungus9.03E-04
43GO:0006621: protein retention in ER lumen1.04E-03
44GO:0009939: positive regulation of gibberellic acid mediated signaling pathway1.04E-03
45GO:0015031: protein transport1.06E-03
46GO:0006097: glyoxylate cycle1.31E-03
47GO:0009229: thiamine diphosphate biosynthetic process1.31E-03
48GO:0006665: sphingolipid metabolic process1.31E-03
49GO:0009228: thiamine biosynthetic process1.61E-03
50GO:1900425: negative regulation of defense response to bacterium1.61E-03
51GO:0009759: indole glucosinolate biosynthetic process1.61E-03
52GO:0010256: endomembrane system organization1.61E-03
53GO:0009816: defense response to bacterium, incompatible interaction1.92E-03
54GO:0048444: floral organ morphogenesis1.93E-03
55GO:0010044: response to aluminum ion2.27E-03
56GO:0009617: response to bacterium2.50E-03
57GO:0009850: auxin metabolic process2.63E-03
58GO:0016559: peroxisome fission2.63E-03
59GO:0010417: glucuronoxylan biosynthetic process3.00E-03
60GO:0030968: endoplasmic reticulum unfolded protein response3.00E-03
61GO:0009056: catabolic process3.40E-03
62GO:0009835: fruit ripening3.40E-03
63GO:0007338: single fertilization3.40E-03
64GO:0009086: methionine biosynthetic process3.81E-03
65GO:0043069: negative regulation of programmed cell death4.23E-03
66GO:0010629: negative regulation of gene expression4.23E-03
67GO:0000038: very long-chain fatty acid metabolic process4.67E-03
68GO:0000266: mitochondrial fission5.13E-03
69GO:0006486: protein glycosylation5.15E-03
70GO:2000012: regulation of auxin polar transport5.60E-03
71GO:0010102: lateral root morphogenesis5.60E-03
72GO:0000162: tryptophan biosynthetic process7.10E-03
73GO:0009751: response to salicylic acid7.35E-03
74GO:0000027: ribosomal large subunit assembly7.63E-03
75GO:0009863: salicylic acid mediated signaling pathway7.63E-03
76GO:0006289: nucleotide-excision repair7.63E-03
77GO:0007275: multicellular organism development8.64E-03
78GO:0006334: nucleosome assembly8.73E-03
79GO:0009269: response to desiccation8.73E-03
80GO:0009814: defense response, incompatible interaction9.30E-03
81GO:0031348: negative regulation of defense response9.30E-03
82GO:0009693: ethylene biosynthetic process9.89E-03
83GO:0009411: response to UV9.89E-03
84GO:0042742: defense response to bacterium1.03E-02
85GO:0010051: xylem and phloem pattern formation1.17E-02
86GO:0010087: phloem or xylem histogenesis1.17E-02
87GO:0045489: pectin biosynthetic process1.24E-02
88GO:0048544: recognition of pollen1.30E-02
89GO:0006623: protein targeting to vacuole1.37E-02
90GO:0002229: defense response to oomycetes1.43E-02
91GO:0010193: response to ozone1.43E-02
92GO:0009738: abscisic acid-activated signaling pathway1.49E-02
93GO:0032502: developmental process1.50E-02
94GO:0009611: response to wounding1.59E-02
95GO:0009567: double fertilization forming a zygote and endosperm1.64E-02
96GO:0051607: defense response to virus1.79E-02
97GO:0008219: cell death2.25E-02
98GO:0009813: flavonoid biosynthetic process2.33E-02
99GO:0010200: response to chitin2.53E-02
100GO:0016192: vesicle-mediated transport2.57E-02
101GO:0000724: double-strand break repair via homologous recombination2.58E-02
102GO:0009867: jasmonic acid mediated signaling pathway2.66E-02
103GO:0016051: carbohydrate biosynthetic process2.66E-02
104GO:0009637: response to blue light2.66E-02
105GO:0006886: intracellular protein transport3.01E-02
106GO:0007165: signal transduction3.07E-02
107GO:0051707: response to other organism3.19E-02
108GO:0006869: lipid transport3.20E-02
109GO:0009636: response to toxic substance3.47E-02
110GO:0006855: drug transmembrane transport3.56E-02
111GO:0009408: response to heat3.60E-02
112GO:0031347: regulation of defense response3.65E-02
113GO:0048364: root development3.75E-02
114GO:0006979: response to oxidative stress3.78E-02
115GO:0009809: lignin biosynthetic process3.94E-02
116GO:0010224: response to UV-B4.04E-02
117GO:0009553: embryo sac development4.96E-02
RankGO TermAdjusted P value
1GO:0004555: alpha,alpha-trehalase activity0.00E+00
2GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity0.00E+00
3GO:0050334: thiaminase activity0.00E+00
4GO:0005046: KDEL sequence binding0.00E+00
5GO:0034338: short-chain carboxylesterase activity0.00E+00
6GO:0033759: flavone synthase activity0.00E+00
7GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
8GO:0031418: L-ascorbic acid binding2.25E-05
9GO:0102391: decanoate--CoA ligase activity5.87E-05
10GO:0004656: procollagen-proline 4-dioxygenase activity5.87E-05
11GO:0004467: long-chain fatty acid-CoA ligase activity7.88E-05
12GO:0008142: oxysterol binding1.27E-04
13GO:0015927: trehalase activity1.46E-04
14GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity1.46E-04
15GO:0047150: betaine-homocysteine S-methyltransferase activity1.46E-04
16GO:0016920: pyroglutamyl-peptidase activity1.46E-04
17GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity1.46E-04
18GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.21E-04
19GO:0000774: adenyl-nucleotide exchange factor activity3.33E-04
20GO:0032934: sterol binding3.33E-04
21GO:0050736: O-malonyltransferase activity3.33E-04
22GO:0010331: gibberellin binding3.33E-04
23GO:0003994: aconitate hydratase activity3.33E-04
24GO:0004449: isocitrate dehydrogenase (NAD+) activity7.83E-04
25GO:0035529: NADH pyrophosphatase activity7.83E-04
26GO:0005460: UDP-glucose transmembrane transporter activity7.83E-04
27GO:0010178: IAA-amino acid conjugate hydrolase activity7.83E-04
28GO:0046923: ER retention sequence binding1.04E-03
29GO:0004834: tryptophan synthase activity1.04E-03
30GO:0005459: UDP-galactose transmembrane transporter activity1.31E-03
31GO:0004623: phospholipase A2 activity1.31E-03
32GO:0047631: ADP-ribose diphosphatase activity1.31E-03
33GO:0000210: NAD+ diphosphatase activity1.61E-03
34GO:0008320: protein transmembrane transporter activity2.27E-03
35GO:0052747: sinapyl alcohol dehydrogenase activity2.63E-03
36GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity3.00E-03
37GO:0004630: phospholipase D activity3.00E-03
38GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity3.40E-03
39GO:0004864: protein phosphatase inhibitor activity4.23E-03
40GO:0016740: transferase activity4.76E-03
41GO:0045551: cinnamyl-alcohol dehydrogenase activity5.13E-03
42GO:0015266: protein channel activity5.60E-03
43GO:0031072: heat shock protein binding5.60E-03
44GO:0003712: transcription cofactor activity6.59E-03
45GO:0051082: unfolded protein binding7.32E-03
46GO:0051087: chaperone binding8.18E-03
47GO:0035251: UDP-glucosyltransferase activity8.73E-03
48GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity9.30E-03
49GO:0005102: receptor binding1.11E-02
50GO:0004872: receptor activity1.37E-02
51GO:0042802: identical protein binding1.61E-02
52GO:0008483: transaminase activity1.72E-02
53GO:0008237: metallopeptidase activity1.72E-02
54GO:0046872: metal ion binding2.03E-02
55GO:0030247: polysaccharide binding2.09E-02
56GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.25E-02
57GO:0015238: drug transmembrane transporter activity2.33E-02
58GO:0051539: 4 iron, 4 sulfur cluster binding2.92E-02
59GO:0042803: protein homodimerization activity3.06E-02
60GO:0035091: phosphatidylinositol binding3.37E-02
61GO:0051287: NAD binding3.65E-02
62GO:0005215: transporter activity4.24E-02
63GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.54E-02
64GO:0022857: transmembrane transporter activity4.85E-02
RankGO TermAdjusted P value
1GO:0005801: cis-Golgi network5.87E-05
2GO:0001405: presequence translocase-associated import motor1.46E-04
3GO:0005794: Golgi apparatus1.46E-04
4GO:0045252: oxoglutarate dehydrogenase complex1.46E-04
5GO:0030134: ER to Golgi transport vesicle3.33E-04
6GO:0005774: vacuolar membrane7.68E-04
7GO:0030658: transport vesicle membrane7.83E-04
8GO:0005744: mitochondrial inner membrane presequence translocase complex8.29E-04
9GO:0000164: protein phosphatase type 1 complex1.31E-03
10GO:0005783: endoplasmic reticulum1.43E-03
11GO:0005789: endoplasmic reticulum membrane1.53E-03
12GO:0030173: integral component of Golgi membrane1.93E-03
13GO:0016021: integral component of membrane2.27E-03
14GO:0031305: integral component of mitochondrial inner membrane2.63E-03
15GO:0030665: clathrin-coated vesicle membrane3.81E-03
16GO:0017119: Golgi transport complex4.23E-03
17GO:0030176: integral component of endoplasmic reticulum membrane6.59E-03
18GO:0005743: mitochondrial inner membrane6.82E-03
19GO:0005802: trans-Golgi network7.20E-03
20GO:0005741: mitochondrial outer membrane8.73E-03
21GO:0005768: endosome8.74E-03
22GO:0031410: cytoplasmic vesicle9.30E-03
23GO:0019898: extrinsic component of membrane1.37E-02
24GO:0005778: peroxisomal membrane1.72E-02
25GO:0000325: plant-type vacuole2.49E-02
26GO:0022625: cytosolic large ribosomal subunit2.57E-02
27GO:0031902: late endosome membrane3.01E-02
28GO:0005635: nuclear envelope4.14E-02
29GO:0005681: spliceosomal complex4.44E-02
30GO:0016607: nuclear speck4.54E-02
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Gene type



Gene DE type