co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0009686: gibberellin biosynthetic process	2.54E-04
6	GO:0010480: microsporocyte differentiation	3.47E-04
7	GO:0015904: tetracycline transport	3.47E-04
8	GO:0000025: maltose catabolic process	3.47E-04
9	GO:0046520: sphingoid biosynthetic process	3.47E-04
10	GO:0071554: cell wall organization or biogenesis	5.13E-04
11	GO:0006741: NADP biosynthetic process	7.56E-04
12	GO:0018026: peptidyl-lysine monomethylation	7.56E-04
13	GO:0071497: cellular response to freezing	7.56E-04
14	GO:0031648: protein destabilization	7.56E-04
15	GO:0005983: starch catabolic process	1.00E-03
16	GO:0016255: attachment of GPI anchor to protein	1.22E-03
17	GO:0071398: cellular response to fatty acid	1.22E-03
18	GO:0048575: short-day photoperiodism, flowering	1.22E-03
19	GO:0019674: NAD metabolic process	1.22E-03
20	GO:0090506: axillary shoot meristem initiation	1.22E-03
21	GO:0033591: response to L-ascorbic acid	1.22E-03
22	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.36E-03
23	GO:0010321: regulation of vegetative phase change	1.76E-03
24	GO:0019363: pyridine nucleotide biosynthetic process	1.76E-03
25	GO:1902347: response to strigolactone	2.37E-03
26	GO:0009755: hormone-mediated signaling pathway	2.37E-03
27	GO:1901141: regulation of lignin biosynthetic process	2.37E-03
28	GO:0048629: trichome patterning	2.37E-03
29	GO:0045487: gibberellin catabolic process	3.03E-03
30	GO:0048497: maintenance of floral organ identity	3.03E-03
31	GO:0010438: cellular response to sulfur starvation	3.03E-03
32	GO:0009913: epidermal cell differentiation	3.74E-03
33	GO:1902456: regulation of stomatal opening	3.74E-03
34	GO:0042793: transcription from plastid promoter	3.74E-03
35	GO:0003006: developmental process involved in reproduction	3.74E-03
36	GO:0010405: arabinogalactan protein metabolic process	3.74E-03
37	GO:0042549: photosystem II stabilization	3.74E-03
38	GO:0009959: negative gravitropism	3.74E-03
39	GO:0010358: leaf shaping	3.74E-03
40	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.74E-03
41	GO:0031930: mitochondria-nucleus signaling pathway	4.50E-03
42	GO:0030488: tRNA methylation	4.50E-03
43	GO:0009648: photoperiodism	4.50E-03
44	GO:0032502: developmental process	4.60E-03
45	GO:0010161: red light signaling pathway	5.32E-03
46	GO:0048437: floral organ development	5.32E-03
47	GO:0006353: DNA-templated transcription, termination	6.17E-03
48	GO:0006402: mRNA catabolic process	6.17E-03
49	GO:0010439: regulation of glucosinolate biosynthetic process	6.17E-03
50	GO:0009690: cytokinin metabolic process	6.17E-03
51	GO:0009704: de-etiolation	6.17E-03
52	GO:2000070: regulation of response to water deprivation	6.17E-03
53	GO:0009819: drought recovery	6.17E-03
54	GO:0042255: ribosome assembly	6.17E-03
55	GO:0046620: regulation of organ growth	6.17E-03
56	GO:0010027: thylakoid membrane organization	6.23E-03
57	GO:0009416: response to light stimulus	6.97E-03
58	GO:0010100: negative regulation of photomorphogenesis	7.08E-03
59	GO:0010099: regulation of photomorphogenesis	7.08E-03
60	GO:0048573: photoperiodism, flowering	7.35E-03
61	GO:0045892: negative regulation of transcription, DNA-templated	7.37E-03
62	GO:0051865: protein autoubiquitination	8.04E-03
63	GO:0006783: heme biosynthetic process	8.04E-03
64	GO:0000902: cell morphogenesis	8.04E-03
65	GO:0048507: meristem development	8.04E-03
66	GO:0005982: starch metabolic process	9.03E-03
67	GO:0031425: chloroplast RNA processing	9.03E-03
68	GO:0016042: lipid catabolic process	9.47E-03
69	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.01E-02
70	GO:0009641: shade avoidance	1.01E-02
71	GO:0006949: syncytium formation	1.01E-02
72	GO:0009867: jasmonic acid mediated signaling pathway	1.03E-02
73	GO:0009073: aromatic amino acid family biosynthetic process	1.12E-02
74	GO:0048229: gametophyte development	1.12E-02
75	GO:0009682: induced systemic resistance	1.12E-02
76	GO:0009739: response to gibberellin	1.13E-02
77	GO:0010582: floral meristem determinacy	1.23E-02
78	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.23E-02
79	GO:0012501: programmed cell death	1.23E-02
80	GO:0006631: fatty acid metabolic process	1.23E-02
81	GO:0010628: positive regulation of gene expression	1.34E-02
82	GO:0006006: glucose metabolic process	1.34E-02
83	GO:2000028: regulation of photoperiodism, flowering	1.34E-02
84	GO:0010075: regulation of meristem growth	1.34E-02
85	GO:0009767: photosynthetic electron transport chain	1.34E-02
86	GO:0010588: cotyledon vascular tissue pattern formation	1.34E-02
87	GO:0010102: lateral root morphogenesis	1.34E-02
88	GO:0010223: secondary shoot formation	1.46E-02
89	GO:0009934: regulation of meristem structural organization	1.46E-02
90	GO:0006302: double-strand break repair	1.46E-02
91	GO:0048467: gynoecium development	1.46E-02
92	GO:0090351: seedling development	1.59E-02
93	GO:0009826: unidimensional cell growth	1.62E-02
94	GO:0009734: auxin-activated signaling pathway	1.66E-02
95	GO:0042753: positive regulation of circadian rhythm	1.71E-02
96	GO:0010187: negative regulation of seed germination	1.85E-02
97	GO:0005992: trehalose biosynthetic process	1.85E-02
98	GO:0019953: sexual reproduction	1.98E-02
99	GO:0051321: meiotic cell cycle	2.12E-02
100	GO:0016114: terpenoid biosynthetic process	2.12E-02
101	GO:0048511: rhythmic process	2.12E-02
102	GO:0006306: DNA methylation	2.12E-02
103	GO:0048278: vesicle docking	2.12E-02
104	GO:0048367: shoot system development	2.21E-02
105	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.26E-02
106	GO:0001944: vasculature development	2.40E-02
107	GO:0009625: response to insect	2.40E-02
108	GO:0009693: ethylene biosynthetic process	2.40E-02
109	GO:0071215: cellular response to abscisic acid stimulus	2.40E-02
110	GO:0009740: gibberellic acid mediated signaling pathway	2.42E-02
111	GO:0045492: xylan biosynthetic process	2.55E-02
112	GO:0016567: protein ubiquitination	2.76E-02
113	GO:0080022: primary root development	2.85E-02
114	GO:0010087: phloem or xylem histogenesis	2.85E-02
115	GO:0010118: stomatal movement	2.85E-02
116	GO:0048653: anther development	2.85E-02
117	GO:0009733: response to auxin	2.85E-02
118	GO:0010305: leaf vascular tissue pattern formation	3.01E-02
119	GO:0010182: sugar mediated signaling pathway	3.01E-02
120	GO:0009741: response to brassinosteroid	3.01E-02
121	GO:0010268: brassinosteroid homeostasis	3.01E-02
122	GO:0009960: endosperm development	3.01E-02
123	GO:0061025: membrane fusion	3.17E-02
124	GO:0048825: cotyledon development	3.33E-02
125	GO:0006351: transcription, DNA-templated	3.39E-02
126	GO:0009058: biosynthetic process	3.40E-02
127	GO:0016132: brassinosteroid biosynthetic process	3.50E-02
128	GO:0010583: response to cyclopentenone	3.67E-02
129	GO:1901657: glycosyl compound metabolic process	3.84E-02
130	GO:0030163: protein catabolic process	3.84E-02
131	GO:0009753: response to jasmonic acid	3.96E-02
132	GO:0009828: plant-type cell wall loosening	4.01E-02
133	GO:0009567: double fertilization forming a zygote and endosperm	4.01E-02
134	GO:0016125: sterol metabolic process	4.01E-02
135	GO:0040008: regulation of growth	4.23E-02
136	GO:0006468: protein phosphorylation	4.30E-02
137	GO:0016310: phosphorylation	4.33E-02
138	GO:0009451: RNA modification	4.53E-02
139	GO:0010029: regulation of seed germination	4.73E-02
140	GO:0006906: vesicle fusion	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
4	GO:0010313: phytochrome binding	3.47E-04
5	GO:0004134: 4-alpha-glucanotransferase activity	3.47E-04
6	GO:0042736: NADH kinase activity	3.47E-04
7	GO:0010012: steroid 22-alpha hydroxylase activity	3.47E-04
8	GO:0000170: sphingosine hydroxylase activity	3.47E-04
9	GO:0050139: nicotinate-N-glucosyltransferase activity	3.47E-04
10	GO:0019200: carbohydrate kinase activity	7.56E-04
11	GO:0045543: gibberellin 2-beta-dioxygenase activity	7.56E-04
12	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.56E-04
13	GO:0042284: sphingolipid delta-4 desaturase activity	7.56E-04
14	GO:0008493: tetracycline transporter activity	7.56E-04
15	GO:0016413: O-acetyltransferase activity	7.62E-04
16	GO:0045544: gibberellin 20-oxidase activity	1.76E-03
17	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.76E-03
18	GO:0033612: receptor serine/threonine kinase binding	2.13E-03
19	GO:0046556: alpha-L-arabinofuranosidase activity	2.37E-03
20	GO:0016279: protein-lysine N-methyltransferase activity	2.37E-03
21	GO:0003727: single-stranded RNA binding	2.77E-03
22	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.03E-03
23	GO:2001070: starch binding	3.74E-03
24	GO:0080030: methyl indole-3-acetate esterase activity	3.74E-03
25	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.74E-03
26	GO:0004709: MAP kinase kinase kinase activity	3.74E-03
27	GO:0016788: hydrolase activity, acting on ester bonds	4.06E-03
28	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.50E-03
29	GO:0016832: aldehyde-lyase activity	4.50E-03
30	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.50E-03
31	GO:0005200: structural constituent of cytoskeleton	5.55E-03
32	GO:0052689: carboxylic ester hydrolase activity	6.37E-03
33	GO:0003951: NAD+ kinase activity	7.08E-03
34	GO:0008173: RNA methyltransferase activity	7.08E-03
35	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	7.64E-03
36	GO:0004871: signal transducer activity	7.73E-03
37	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.04E-03
38	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	9.43E-03
39	GO:0004805: trehalose-phosphatase activity	1.01E-02
40	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.05E-02
41	GO:0009055: electron carrier activity	1.10E-02
42	GO:0004519: endonuclease activity	1.12E-02
43	GO:0043621: protein self-association	1.45E-02
44	GO:0003712: transcription cofactor activity	1.59E-02
45	GO:0004190: aspartic-type endopeptidase activity	1.59E-02
46	GO:0008146: sulfotransferase activity	1.59E-02
47	GO:0031418: L-ascorbic acid binding	1.85E-02
48	GO:0016298: lipase activity	1.87E-02
49	GO:0008408: 3'-5' exonuclease activity	2.12E-02
50	GO:0010333: terpene synthase activity	2.12E-02
51	GO:0016874: ligase activity	2.42E-02
52	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.01E-02
53	GO:0001085: RNA polymerase II transcription factor binding	3.01E-02
54	GO:0004722: protein serine/threonine phosphatase activity	3.14E-02
55	GO:0003677: DNA binding	3.27E-02
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.31E-02
57	GO:0004518: nuclease activity	3.67E-02
58	GO:0000156: phosphorelay response regulator activity	3.84E-02
59	GO:0016759: cellulose synthase activity	4.01E-02
60	GO:0004672: protein kinase activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	1.73E-04
2	GO:0000791: euchromatin	3.47E-04
3	GO:0019898: extrinsic component of membrane	4.70E-04
4	GO:0030870: Mre11 complex	7.56E-04
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.56E-04
6	GO:0042765: GPI-anchor transamidase complex	1.22E-03
7	GO:0009544: chloroplast ATP synthase complex	2.37E-03
8	GO:0000795: synaptonemal complex	3.03E-03
9	GO:0009501: amyloplast	6.17E-03
10	GO:0010494: cytoplasmic stress granule	8.04E-03
11	GO:0009508: plastid chromosome	1.34E-02
12	GO:0005578: proteinaceous extracellular matrix	1.34E-02
13	GO:0030095: chloroplast photosystem II	1.46E-02
14	GO:0009532: plastid stroma	2.12E-02
15	GO:0015629: actin cytoskeleton	2.40E-02
16	GO:0009534: chloroplast thylakoid	3.09E-02
17	GO:0009504: cell plate	3.33E-02
18	GO:0000785: chromatin	3.67E-02
19	GO:0009295: nucleoid	4.19E-02
20	GO:0030529: intracellular ribonucleoprotein complex	4.55E-02
21	GO:0000932: P-body	4.55E-02
22	GO:0005667: transcription factor complex	4.91E-02