co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G24040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902009: positive regulation of toxin transport	0.00E+00
2	GO:0051553: flavone biosynthetic process	0.00E+00
3	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
4	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
5	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
6	GO:0080149: sucrose induced translational repression	0.00E+00
7	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
8	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
9	GO:0000077: DNA damage checkpoint	1.23E-04
10	GO:1990641: response to iron ion starvation	1.23E-04
11	GO:0080183: response to photooxidative stress	2.86E-04
12	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.86E-04
13	GO:0042853: L-alanine catabolic process	2.86E-04
14	GO:0040020: regulation of meiotic nuclear division	2.86E-04
15	GO:0006101: citrate metabolic process	2.86E-04
16	GO:0030150: protein import into mitochondrial matrix	4.26E-04
17	GO:0006065: UDP-glucuronate biosynthetic process	4.72E-04
18	GO:0009410: response to xenobiotic stimulus	4.72E-04
19	GO:0052546: cell wall pectin metabolic process	4.72E-04
20	GO:0055070: copper ion homeostasis	6.76E-04
21	GO:0001676: long-chain fatty acid metabolic process	6.76E-04
22	GO:0051639: actin filament network formation	6.76E-04
23	GO:0002239: response to oomycetes	6.76E-04
24	GO:0051764: actin crosslink formation	8.97E-04
25	GO:0006621: protein retention in ER lumen	8.97E-04
26	GO:0006097: glyoxylate cycle	1.13E-03
27	GO:0009229: thiamine diphosphate biosynthetic process	1.13E-03
28	GO:0006014: D-ribose metabolic process	1.39E-03
29	GO:0009228: thiamine biosynthetic process	1.39E-03
30	GO:1900425: negative regulation of defense response to bacterium	1.39E-03
31	GO:0007275: multicellular organism development	1.59E-03
32	GO:0017148: negative regulation of translation	1.66E-03
33	GO:0010044: response to aluminum ion	1.95E-03
34	GO:0006605: protein targeting	2.26E-03
35	GO:0045010: actin nucleation	2.26E-03
36	GO:0006102: isocitrate metabolic process	2.26E-03
37	GO:0016559: peroxisome fission	2.26E-03
38	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.26E-03
39	GO:0015031: protein transport	2.70E-03
40	GO:0006631: fatty acid metabolic process	2.82E-03
41	GO:0000902: cell morphogenesis	2.91E-03
42	GO:0009835: fruit ripening	2.91E-03
43	GO:0007338: single fertilization	2.91E-03
44	GO:0010332: response to gamma radiation	2.91E-03
45	GO:0051707: response to other organism	3.06E-03
46	GO:0008202: steroid metabolic process	3.26E-03
47	GO:0090332: stomatal closure	3.26E-03
48	GO:0009086: methionine biosynthetic process	3.26E-03
49	GO:0000103: sulfate assimilation	3.62E-03
50	GO:0009846: pollen germination	3.83E-03
51	GO:0010224: response to UV-B	4.25E-03
52	GO:0000266: mitochondrial fission	4.39E-03
53	GO:0045037: protein import into chloroplast stroma	4.39E-03
54	GO:0030036: actin cytoskeleton organization	4.79E-03
55	GO:2000012: regulation of auxin polar transport	4.79E-03
56	GO:0007015: actin filament organization	5.20E-03
57	GO:0002237: response to molecule of bacterial origin	5.20E-03
58	GO:0009825: multidimensional cell growth	5.63E-03
59	GO:0000162: tryptophan biosynthetic process	6.06E-03
60	GO:0051017: actin filament bundle assembly	6.51E-03
61	GO:0006289: nucleotide-excision repair	6.51E-03
62	GO:0000027: ribosomal large subunit assembly	6.51E-03
63	GO:0009863: salicylic acid mediated signaling pathway	6.51E-03
64	GO:0006334: nucleosome assembly	7.45E-03
65	GO:0031348: negative regulation of defense response	7.93E-03
66	GO:0009814: defense response, incompatible interaction	7.93E-03
67	GO:0009411: response to UV	8.43E-03
68	GO:0010584: pollen exine formation	8.93E-03
69	GO:0006662: glycerol ether metabolic process	1.05E-02
70	GO:0009738: abscisic acid-activated signaling pathway	1.11E-02
71	GO:0006470: protein dephosphorylation	1.15E-02
72	GO:0019252: starch biosynthetic process	1.16E-02
73	GO:0006623: protein targeting to vacuole	1.16E-02
74	GO:0008380: RNA splicing	1.20E-02
75	GO:0002229: defense response to oomycetes	1.22E-02
76	GO:0010193: response to ozone	1.22E-02
77	GO:0032502: developmental process	1.28E-02
78	GO:0016032: viral process	1.28E-02
79	GO:0030163: protein catabolic process	1.34E-02
80	GO:0009567: double fertilization forming a zygote and endosperm	1.40E-02
81	GO:0001666: response to hypoxia	1.58E-02
82	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.65E-02
83	GO:0009816: defense response to bacterium, incompatible interaction	1.65E-02
84	GO:0048767: root hair elongation	1.98E-02
85	GO:0009813: flavonoid biosynthetic process	1.98E-02
86	GO:0016192: vesicle-mediated transport	2.04E-02
87	GO:0006499: N-terminal protein myristoylation	2.05E-02
88	GO:0000724: double-strand break repair via homologous recombination	2.19E-02
89	GO:0045454: cell redox homeostasis	2.33E-02
90	GO:0034599: cellular response to oxidative stress	2.34E-02
91	GO:0006099: tricarboxylic acid cycle	2.34E-02
92	GO:0006886: intracellular protein transport	2.40E-02
93	GO:0010114: response to red light	2.71E-02
94	GO:0009744: response to sucrose	2.71E-02
95	GO:0000209: protein polyubiquitination	2.79E-02
96	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.11E-02
97	GO:0009809: lignin biosynthetic process	3.35E-02
98	GO:0006486: protein glycosylation	3.35E-02
99	GO:0009620: response to fungus	4.04E-02
100	GO:0006396: RNA processing	4.40E-02
101	GO:0000398: mRNA splicing, via spliceosome	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0005046: KDEL sequence binding	0.00E+00
2	GO:0034338: short-chain carboxylesterase activity	0.00E+00
3	GO:0033759: flavone synthase activity	0.00E+00
4	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
5	GO:0050334: thiaminase activity	0.00E+00
6	GO:0047150: betaine-homocysteine S-methyltransferase activity	1.23E-04
7	GO:0016920: pyroglutamyl-peptidase activity	1.23E-04
8	GO:0003994: aconitate hydratase activity	2.86E-04
9	GO:0000774: adenyl-nucleotide exchange factor activity	2.86E-04
10	GO:0032934: sterol binding	2.86E-04
11	GO:0048531: beta-1,3-galactosyltransferase activity	2.86E-04
12	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.72E-04
13	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	6.76E-04
14	GO:0035529: NADH pyrophosphatase activity	6.76E-04
15	GO:0004834: tryptophan synthase activity	8.97E-04
16	GO:0046923: ER retention sequence binding	8.97E-04
17	GO:0047631: ADP-ribose diphosphatase activity	1.13E-03
18	GO:0004623: phospholipase A2 activity	1.13E-03
19	GO:0000210: NAD+ diphosphatase activity	1.39E-03
20	GO:0004656: procollagen-proline 4-dioxygenase activity	1.66E-03
21	GO:0102391: decanoate--CoA ligase activity	1.66E-03
22	GO:0004747: ribokinase activity	1.66E-03
23	GO:0008320: protein transmembrane transporter activity	1.95E-03
24	GO:0004467: long-chain fatty acid-CoA ligase activity	1.95E-03
25	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.26E-03
26	GO:0008865: fructokinase activity	2.26E-03
27	GO:0052747: sinapyl alcohol dehydrogenase activity	2.26E-03
28	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.38E-03
29	GO:0008142: oxysterol binding	2.58E-03
30	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.91E-03
31	GO:0030234: enzyme regulator activity	3.62E-03
32	GO:0051287: NAD binding	3.69E-03
33	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.39E-03
34	GO:0008378: galactosyltransferase activity	4.39E-03
35	GO:0004022: alcohol dehydrogenase (NAD) activity	4.79E-03
36	GO:0003712: transcription cofactor activity	5.63E-03
37	GO:0015035: protein disulfide oxidoreductase activity	6.00E-03
38	GO:0004725: protein tyrosine phosphatase activity	6.06E-03
39	GO:0031418: L-ascorbic acid binding	6.51E-03
40	GO:0051087: chaperone binding	6.98E-03
41	GO:0030170: pyridoxal phosphate binding	8.10E-03
42	GO:0047134: protein-disulfide reductase activity	9.45E-03
43	GO:0005102: receptor binding	9.45E-03
44	GO:0004791: thioredoxin-disulfide reductase activity	1.11E-02
45	GO:0050662: coenzyme binding	1.11E-02
46	GO:0004872: receptor activity	1.16E-02
47	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.34E-02
48	GO:0051015: actin filament binding	1.34E-02
49	GO:0004806: triglyceride lipase activity	1.78E-02
50	GO:0030247: polysaccharide binding	1.78E-02
51	GO:0005507: copper ion binding	1.82E-02
52	GO:0004222: metalloendopeptidase activity	2.05E-02
53	GO:0042803: protein homodimerization activity	2.44E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	2.48E-02
55	GO:0005509: calcium ion binding	2.55E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	2.87E-02
57	GO:0022857: transmembrane transporter activity	4.13E-02
58	GO:0051082: unfolded protein binding	4.31E-02
59	GO:0016758: transferase activity, transferring hexosyl groups	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005801: cis-Golgi network	4.51E-05
2	GO:0001405: presequence translocase-associated import motor	1.23E-04
3	GO:0030134: ER to Golgi transport vesicle	2.86E-04
4	GO:0032432: actin filament bundle	6.76E-04
5	GO:0030658: transport vesicle membrane	6.76E-04
6	GO:0005885: Arp2/3 protein complex	1.66E-03
7	GO:0005829: cytosol	1.98E-03
8	GO:0031902: late endosome membrane	2.82E-03
9	GO:0030665: clathrin-coated vesicle membrane	3.26E-03
10	GO:0008540: proteasome regulatory particle, base subcomplex	3.26E-03
11	GO:0017119: Golgi transport complex	3.62E-03
12	GO:0005884: actin filament	4.00E-03
13	GO:0005737: cytoplasm	4.22E-03
14	GO:0005774: vacuolar membrane	4.86E-03
15	GO:0005741: mitochondrial outer membrane	7.45E-03
16	GO:0005623: cell	7.49E-03
17	GO:0005794: Golgi apparatus	8.68E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.93E-03
19	GO:0005789: endoplasmic reticulum membrane	1.38E-02
20	GO:0005778: peroxisomal membrane	1.46E-02
21	GO:0000325: plant-type vacuole	2.12E-02
22	GO:0005743: mitochondrial inner membrane	2.67E-02
23	GO:0000502: proteasome complex	3.35E-02
24	GO:0005681: spliceosomal complex	3.78E-02
25	GO:0016607: nuclear speck	3.86E-02
26	GO:0005834: heterotrimeric G-protein complex	3.95E-02
27	GO:0000139: Golgi membrane	4.10E-02
28	GO:0009706: chloroplast inner membrane	4.31E-02
29	GO:0005783: endoplasmic reticulum	4.95E-02