co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0000819: sister chromatid segregation	0.00E+00
3	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
4	GO:0061062: regulation of nematode larval development	3.18E-06
5	GO:0010583: response to cyclopentenone	2.16E-05
6	GO:0048497: maintenance of floral organ identity	7.43E-05
7	GO:0051013: microtubule severing	2.63E-04
8	GO:0045786: negative regulation of cell cycle	2.63E-04
9	GO:0006434: seryl-tRNA aminoacylation	2.63E-04
10	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.63E-04
11	GO:0006438: valyl-tRNA aminoacylation	2.63E-04
12	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	2.63E-04
13	GO:0032958: inositol phosphate biosynthetic process	2.63E-04
14	GO:0006426: glycyl-tRNA aminoacylation	2.63E-04
15	GO:0006949: syncytium formation	5.12E-04
16	GO:0043039: tRNA aminoacylation	5.78E-04
17	GO:0080005: photosystem stoichiometry adjustment	5.78E-04
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.62E-04
19	GO:0048575: short-day photoperiodism, flowering	9.39E-04
20	GO:0090506: axillary shoot meristem initiation	9.39E-04
21	GO:0010226: response to lithium ion	9.39E-04
22	GO:0051301: cell division	1.04E-03
23	GO:0019953: sexual reproduction	1.30E-03
24	GO:0006020: inositol metabolic process	1.34E-03
25	GO:0007276: gamete generation	1.34E-03
26	GO:0016556: mRNA modification	1.34E-03
27	GO:0009558: embryo sac cellularization	1.34E-03
28	GO:0010321: regulation of vegetative phase change	1.34E-03
29	GO:0009664: plant-type cell wall organization	1.68E-03
30	GO:0009686: gibberellin biosynthetic process	1.70E-03
31	GO:0010091: trichome branching	1.84E-03
32	GO:0042127: regulation of cell proliferation	1.84E-03
33	GO:0006351: transcription, DNA-templated	1.85E-03
34	GO:0007094: mitotic spindle assembly checkpoint	2.29E-03
35	GO:0007018: microtubule-based movement	2.50E-03
36	GO:0048366: leaf development	2.70E-03
37	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.82E-03
38	GO:0009913: epidermal cell differentiation	2.82E-03
39	GO:0010942: positive regulation of cell death	2.82E-03
40	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.40E-03
41	GO:0019760: glucosinolate metabolic process	3.47E-03
42	GO:0009828: plant-type cell wall loosening	3.47E-03
43	GO:0045995: regulation of embryonic development	4.00E-03
44	GO:0007050: cell cycle arrest	4.00E-03
45	GO:1900056: negative regulation of leaf senescence	4.00E-03
46	GO:0000082: G1/S transition of mitotic cell cycle	4.00E-03
47	GO:0010444: guard mother cell differentiation	4.00E-03
48	GO:0000712: resolution of meiotic recombination intermediates	4.00E-03
49	GO:0009733: response to auxin	4.43E-03
50	GO:0010492: maintenance of shoot apical meristem identity	4.65E-03
51	GO:0016042: lipid catabolic process	5.06E-03
52	GO:0010332: response to gamma radiation	6.03E-03
53	GO:0048589: developmental growth	6.03E-03
54	GO:1900865: chloroplast RNA modification	6.77E-03
55	GO:0031425: chloroplast RNA processing	6.77E-03
56	GO:0007346: regulation of mitotic cell cycle	6.77E-03
57	GO:0006470: protein dephosphorylation	6.85E-03
58	GO:0006259: DNA metabolic process	7.54E-03
59	GO:0006782: protoporphyrinogen IX biosynthetic process	7.54E-03
60	GO:0009641: shade avoidance	7.54E-03
61	GO:0030001: metal ion transport	7.79E-03
62	GO:0008285: negative regulation of cell proliferation	8.35E-03
63	GO:0006265: DNA topological change	8.35E-03
64	GO:0009750: response to fructose	8.35E-03
65	GO:0048229: gametophyte development	8.35E-03
66	GO:0009744: response to sucrose	8.82E-03
67	GO:0006312: mitotic recombination	9.17E-03
68	GO:0012501: programmed cell death	9.17E-03
69	GO:0005983: starch catabolic process	9.17E-03
70	GO:0010152: pollen maturation	9.17E-03
71	GO:0042546: cell wall biogenesis	9.18E-03
72	GO:0009826: unidimensional cell growth	9.61E-03
73	GO:0009767: photosynthetic electron transport chain	1.00E-02
74	GO:0010102: lateral root morphogenesis	1.00E-02
75	GO:0010628: positive regulation of gene expression	1.00E-02
76	GO:0006302: double-strand break repair	1.09E-02
77	GO:0048768: root hair cell tip growth	1.09E-02
78	GO:0007034: vacuolar transport	1.09E-02
79	GO:0010223: secondary shoot formation	1.09E-02
80	GO:0009887: animal organ morphogenesis	1.09E-02
81	GO:0071555: cell wall organization	1.16E-02
82	GO:0009825: multidimensional cell growth	1.18E-02
83	GO:0006636: unsaturated fatty acid biosynthetic process	1.28E-02
84	GO:0006863: purine nucleobase transport	1.28E-02
85	GO:0006418: tRNA aminoacylation for protein translation	1.48E-02
86	GO:0043622: cortical microtubule organization	1.48E-02
87	GO:0051321: meiotic cell cycle	1.58E-02
88	GO:0009740: gibberellic acid mediated signaling pathway	1.60E-02
89	GO:0007005: mitochondrion organization	1.68E-02
90	GO:0009624: response to nematode	1.70E-02
91	GO:0045892: negative regulation of transcription, DNA-templated	1.70E-02
92	GO:0001944: vasculature development	1.79E-02
93	GO:0051726: regulation of cell cycle	1.80E-02
94	GO:0006355: regulation of transcription, DNA-templated	1.87E-02
95	GO:0048443: stamen development	1.90E-02
96	GO:0000226: microtubule cytoskeleton organization	2.13E-02
97	GO:0000271: polysaccharide biosynthetic process	2.13E-02
98	GO:0009741: response to brassinosteroid	2.24E-02
99	GO:0045489: pectin biosynthetic process	2.24E-02
100	GO:0007059: chromosome segregation	2.36E-02
101	GO:0048825: cotyledon development	2.48E-02
102	GO:0009749: response to glucose	2.48E-02
103	GO:0071554: cell wall organization or biogenesis	2.61E-02
104	GO:0002229: defense response to oomycetes	2.61E-02
105	GO:0032502: developmental process	2.73E-02
106	GO:0040008: regulation of growth	2.81E-02
107	GO:0030163: protein catabolic process	2.86E-02
108	GO:0009567: double fertilization forming a zygote and endosperm	2.99E-02
109	GO:0016567: protein ubiquitination	3.01E-02
110	GO:0000910: cytokinesis	3.25E-02
111	GO:0009739: response to gibberellin	3.29E-02
112	GO:0009734: auxin-activated signaling pathway	3.33E-02
113	GO:0006468: protein phosphorylation	3.58E-02
114	GO:0015995: chlorophyll biosynthetic process	3.80E-02
115	GO:0010411: xyloglucan metabolic process	3.80E-02
116	GO:0048573: photoperiodism, flowering	3.80E-02
117	GO:0009908: flower development	3.91E-02
118	GO:0016311: dephosphorylation	3.95E-02
119	GO:0009735: response to cytokinin	3.96E-02
120	GO:0009817: defense response to fungus, incompatible interaction	4.09E-02
121	GO:0048481: plant ovule development	4.09E-02
122	GO:0000160: phosphorelay signal transduction system	4.24E-02
123	GO:0009832: plant-type cell wall biogenesis	4.24E-02
124	GO:0009416: response to light stimulus	4.42E-02
125	GO:0016051: carbohydrate biosynthetic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0000829: inositol heptakisphosphate kinase activity	2.63E-04
3	GO:0004828: serine-tRNA ligase activity	2.63E-04
4	GO:0000828: inositol hexakisphosphate kinase activity	2.63E-04
5	GO:0008568: microtubule-severing ATPase activity	2.63E-04
6	GO:0004832: valine-tRNA ligase activity	2.63E-04
7	GO:0004820: glycine-tRNA ligase activity	2.63E-04
8	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.63E-04
9	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.78E-04
10	GO:0004109: coproporphyrinogen oxidase activity	5.78E-04
11	GO:0019156: isoamylase activity	5.78E-04
12	GO:0043565: sequence-specific DNA binding	8.60E-04
13	GO:0045544: gibberellin 20-oxidase activity	1.34E-03
14	GO:0003916: DNA topoisomerase activity	1.34E-03
15	GO:0010011: auxin binding	1.79E-03
16	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.79E-03
17	GO:0003777: microtubule motor activity	2.10E-03
18	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.32E-03
19	GO:0016853: isomerase activity	2.50E-03
20	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.82E-03
21	GO:0030332: cyclin binding	2.82E-03
22	GO:0004556: alpha-amylase activity	2.82E-03
23	GO:0016832: aldehyde-lyase activity	3.40E-03
24	GO:0052689: carboxylic ester hydrolase activity	3.40E-03
25	GO:0016791: phosphatase activity	3.47E-03
26	GO:0004722: protein serine/threonine phosphatase activity	4.42E-03
27	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.32E-03
28	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.32E-03
29	GO:0009055: electron carrier activity	5.88E-03
30	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.07E-03
31	GO:0008017: microtubule binding	6.13E-03
32	GO:0003725: double-stranded RNA binding	1.00E-02
33	GO:0016788: hydrolase activity, acting on ester bonds	1.03E-02
34	GO:0003712: transcription cofactor activity	1.18E-02
35	GO:0004190: aspartic-type endopeptidase activity	1.18E-02
36	GO:0005345: purine nucleobase transmembrane transporter activity	1.48E-02
37	GO:0008408: 3'-5' exonuclease activity	1.58E-02
38	GO:0008094: DNA-dependent ATPase activity	1.58E-02
39	GO:0033612: receptor serine/threonine kinase binding	1.58E-02
40	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.68E-02
41	GO:0005524: ATP binding	1.79E-02
42	GO:0030570: pectate lyase activity	1.79E-02
43	GO:0005515: protein binding	1.94E-02
44	GO:0004812: aminoacyl-tRNA ligase activity	2.01E-02
45	GO:0004672: protein kinase activity	2.23E-02
46	GO:0001085: RNA polymerase II transcription factor binding	2.24E-02
47	GO:0004519: endonuclease activity	2.41E-02
48	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.43E-02
49	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.61E-02
50	GO:0004518: nuclease activity	2.73E-02
51	GO:0000156: phosphorelay response regulator activity	2.86E-02
52	GO:0004674: protein serine/threonine kinase activity	3.15E-02
53	GO:0016413: O-acetyltransferase activity	3.25E-02
54	GO:0016887: ATPase activity	3.75E-02
55	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.80E-02
56	GO:0005096: GTPase activator activity	4.24E-02
57	GO:0030145: manganese ion binding	4.53E-02
58	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.53E-02
59	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	2.63E-04
3	GO:0009569: chloroplast starch grain	5.78E-04
4	GO:0030870: Mre11 complex	5.78E-04
5	GO:0008287: protein serine/threonine phosphatase complex	9.39E-04
6	GO:0009531: secondary cell wall	1.34E-03
7	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.79E-03
8	GO:0005828: kinetochore microtubule	1.79E-03
9	GO:0005871: kinesin complex	2.00E-03
10	GO:0000795: synaptonemal complex	2.29E-03
11	GO:0000776: kinetochore	2.29E-03
12	GO:0005874: microtubule	2.77E-03
13	GO:0000793: condensed chromosome	2.82E-03
14	GO:0010369: chromocenter	3.40E-03
15	GO:0000777: condensed chromosome kinetochore	3.40E-03
16	GO:0000815: ESCRT III complex	3.40E-03
17	GO:0000794: condensed nuclear chromosome	4.00E-03
18	GO:0005876: spindle microtubule	6.77E-03
19	GO:0009508: plastid chromosome	1.00E-02
20	GO:0009570: chloroplast stroma	1.07E-02
21	GO:0005875: microtubule associated complex	1.28E-02
22	GO:0009504: cell plate	2.48E-02
23	GO:0000785: chromatin	2.73E-02
24	GO:0009295: nucleoid	3.12E-02
25	GO:0005667: transcription factor complex	3.66E-02
26	GO:0046658: anchored component of plasma membrane	3.89E-02
27	GO:0005618: cell wall	4.85E-02