co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G23740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0010203: response to very low fluence red light stimulus	0.00E+00
4	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0033528: S-methylmethionine cycle	0.00E+00
8	GO:0043255: regulation of carbohydrate biosynthetic process	3.53E-06
9	GO:0090351: seedling development	6.65E-05
10	GO:0045038: protein import into chloroplast thylakoid membrane	8.14E-05
11	GO:0009793: embryo development ending in seed dormancy	8.19E-05
12	GO:0045010: actin nucleation	2.69E-04
13	GO:0006436: tryptophanyl-tRNA aminoacylation	2.77E-04
14	GO:0000066: mitochondrial ornithine transport	2.77E-04
15	GO:1902458: positive regulation of stomatal opening	2.77E-04
16	GO:0006419: alanyl-tRNA aminoacylation	2.77E-04
17	GO:0015969: guanosine tetraphosphate metabolic process	2.77E-04
18	GO:0048657: anther wall tapetum cell differentiation	2.77E-04
19	GO:0000012: single strand break repair	2.77E-04
20	GO:0042547: cell wall modification involved in multidimensional cell growth	2.77E-04
21	GO:0015798: myo-inositol transport	2.77E-04
22	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.77E-04
23	GO:0043087: regulation of GTPase activity	2.77E-04
24	GO:0071482: cellular response to light stimulus	3.32E-04
25	GO:0009821: alkaloid biosynthetic process	3.99E-04
26	GO:0000373: Group II intron splicing	3.99E-04
27	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.09E-04
28	GO:0051214: RNA virus induced gene silencing	6.09E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.09E-04
30	GO:0046741: transport of virus in host, tissue to tissue	6.09E-04
31	GO:0006435: threonyl-tRNA aminoacylation	6.09E-04
32	GO:0000256: allantoin catabolic process	6.09E-04
33	GO:0006352: DNA-templated transcription, initiation	6.38E-04
34	GO:0010207: photosystem II assembly	9.28E-04
35	GO:0005977: glycogen metabolic process	9.88E-04
36	GO:0010136: ureide catabolic process	9.88E-04
37	GO:0017006: protein-tetrapyrrole linkage	9.88E-04
38	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	9.88E-04
39	GO:0006696: ergosterol biosynthetic process	9.88E-04
40	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.41E-03
41	GO:0009584: detection of visible light	1.41E-03
42	GO:0033014: tetrapyrrole biosynthetic process	1.41E-03
43	GO:0006145: purine nucleobase catabolic process	1.41E-03
44	GO:0009226: nucleotide-sugar biosynthetic process	1.41E-03
45	GO:0042989: sequestering of actin monomers	1.41E-03
46	GO:0043572: plastid fission	1.41E-03
47	GO:2001141: regulation of RNA biosynthetic process	1.41E-03
48	GO:0051781: positive regulation of cell division	1.89E-03
49	GO:0048442: sepal development	1.89E-03
50	GO:0051322: anaphase	1.89E-03
51	GO:0006661: phosphatidylinositol biosynthetic process	1.89E-03
52	GO:0071483: cellular response to blue light	1.89E-03
53	GO:0010021: amylopectin biosynthetic process	1.89E-03
54	GO:0016117: carotenoid biosynthetic process	2.16E-03
55	GO:0009658: chloroplast organization	2.37E-03
56	GO:1902183: regulation of shoot apical meristem development	2.41E-03
57	GO:0016123: xanthophyll biosynthetic process	2.41E-03
58	GO:0010158: abaxial cell fate specification	2.41E-03
59	GO:0006465: signal peptide processing	2.41E-03
60	GO:0030041: actin filament polymerization	2.41E-03
61	GO:0010268: brassinosteroid homeostasis	2.51E-03
62	GO:0007059: chromosome segregation	2.70E-03
63	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.98E-03
64	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.98E-03
65	GO:0010337: regulation of salicylic acid metabolic process	2.98E-03
66	GO:0016132: brassinosteroid biosynthetic process	3.09E-03
67	GO:0010090: trichome morphogenesis	3.52E-03
68	GO:0010076: maintenance of floral meristem identity	3.58E-03
69	GO:0017148: negative regulation of translation	3.58E-03
70	GO:0016125: sterol metabolic process	3.75E-03
71	GO:0010161: red light signaling pathway	4.23E-03
72	GO:0009395: phospholipid catabolic process	4.23E-03
73	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.23E-03
74	GO:0006400: tRNA modification	4.23E-03
75	GO:0051510: regulation of unidimensional cell growth	4.23E-03
76	GO:0016126: sterol biosynthetic process	4.47E-03
77	GO:0048564: photosystem I assembly	4.90E-03
78	GO:0042255: ribosome assembly	4.90E-03
79	GO:0006353: DNA-templated transcription, termination	4.90E-03
80	GO:2000070: regulation of response to water deprivation	4.90E-03
81	GO:0010492: maintenance of shoot apical meristem identity	4.90E-03
82	GO:0022900: electron transport chain	5.62E-03
83	GO:0032544: plastid translation	5.62E-03
84	GO:0030244: cellulose biosynthetic process	5.83E-03
85	GO:0046685: response to arsenic-containing substance	6.37E-03
86	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.37E-03
87	GO:0010206: photosystem II repair	6.37E-03
88	GO:2000024: regulation of leaf development	6.37E-03
89	GO:0048507: meristem development	6.37E-03
90	GO:0006783: heme biosynthetic process	6.37E-03
91	GO:0009638: phototropism	7.15E-03
92	GO:0006779: porphyrin-containing compound biosynthetic process	7.15E-03
93	GO:0010267: production of ta-siRNAs involved in RNA interference	7.15E-03
94	GO:0009086: methionine biosynthetic process	7.15E-03
95	GO:0006259: DNA metabolic process	7.97E-03
96	GO:0048441: petal development	7.97E-03
97	GO:0006032: chitin catabolic process	7.97E-03
98	GO:0030422: production of siRNA involved in RNA interference	7.97E-03
99	GO:0010216: maintenance of DNA methylation	8.82E-03
100	GO:0006265: DNA topological change	8.82E-03
101	GO:0045037: protein import into chloroplast stroma	9.70E-03
102	GO:0030036: actin cytoskeleton organization	1.06E-02
103	GO:0006094: gluconeogenesis	1.06E-02
104	GO:0009767: photosynthetic electron transport chain	1.06E-02
105	GO:0006302: double-strand break repair	1.16E-02
106	GO:0048440: carpel development	1.16E-02
107	GO:0010020: chloroplast fission	1.16E-02
108	GO:0010053: root epidermal cell differentiation	1.25E-02
109	GO:0009825: multidimensional cell growth	1.25E-02
110	GO:0010167: response to nitrate	1.25E-02
111	GO:0009809: lignin biosynthetic process	1.29E-02
112	GO:0009585: red, far-red light phototransduction	1.29E-02
113	GO:0071555: cell wall organization	1.33E-02
114	GO:0009833: plant-type primary cell wall biogenesis	1.35E-02
115	GO:0006833: water transport	1.35E-02
116	GO:0006508: proteolysis	1.40E-02
117	GO:0009944: polarity specification of adaxial/abaxial axis	1.46E-02
118	GO:0007010: cytoskeleton organization	1.46E-02
119	GO:0006289: nucleotide-excision repair	1.46E-02
120	GO:0010073: meristem maintenance	1.56E-02
121	GO:0006825: copper ion transport	1.56E-02
122	GO:0051302: regulation of cell division	1.56E-02
123	GO:0006418: tRNA aminoacylation for protein translation	1.56E-02
124	GO:0015992: proton transport	1.67E-02
125	GO:0016998: cell wall macromolecule catabolic process	1.67E-02
126	GO:0031348: negative regulation of defense response	1.78E-02
127	GO:0080092: regulation of pollen tube growth	1.78E-02
128	GO:0009814: defense response, incompatible interaction	1.78E-02
129	GO:0006730: one-carbon metabolic process	1.78E-02
130	GO:0010584: pollen exine formation	2.01E-02
131	GO:0048443: stamen development	2.01E-02
132	GO:0019722: calcium-mediated signaling	2.01E-02
133	GO:0009306: protein secretion	2.01E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.13E-02
135	GO:0008033: tRNA processing	2.25E-02
136	GO:0034220: ion transmembrane transport	2.25E-02
137	GO:0048868: pollen tube development	2.37E-02
138	GO:0046323: glucose import	2.37E-02
139	GO:0045489: pectin biosynthetic process	2.37E-02
140	GO:0010154: fruit development	2.37E-02
141	GO:0010197: polar nucleus fusion	2.37E-02
142	GO:0009058: biosynthetic process	2.43E-02
143	GO:0007018: microtubule-based movement	2.50E-02
144	GO:0019252: starch biosynthetic process	2.63E-02
145	GO:0008654: phospholipid biosynthetic process	2.63E-02
146	GO:0005975: carbohydrate metabolic process	2.69E-02
147	GO:0000302: response to reactive oxygen species	2.76E-02
148	GO:0032502: developmental process	2.89E-02
149	GO:0009630: gravitropism	2.89E-02
150	GO:0007264: small GTPase mediated signal transduction	2.89E-02
151	GO:0010583: response to cyclopentenone	2.89E-02
152	GO:0031047: gene silencing by RNA	2.89E-02
153	GO:0016032: viral process	2.89E-02
154	GO:0006413: translational initiation	2.97E-02
155	GO:0045490: pectin catabolic process	3.18E-02
156	GO:0007267: cell-cell signaling	3.30E-02
157	GO:0051607: defense response to virus	3.44E-02
158	GO:0000910: cytokinesis	3.44E-02
159	GO:0009911: positive regulation of flower development	3.58E-02
160	GO:0007166: cell surface receptor signaling pathway	3.64E-02
161	GO:0048573: photoperiodism, flowering	4.02E-02
162	GO:0016311: dephosphorylation	4.17E-02
163	GO:0009817: defense response to fungus, incompatible interaction	4.33E-02
164	GO:0048481: plant ovule development	4.33E-02
165	GO:0018298: protein-chromophore linkage	4.33E-02
166	GO:0009834: plant-type secondary cell wall biogenesis	4.64E-02
167	GO:0010218: response to far red light	4.64E-02
168	GO:0048527: lateral root development	4.79E-02
169	GO:0042254: ribosome biogenesis	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
7	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
8	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
9	GO:0050613: delta14-sterol reductase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0001053: plastid sigma factor activity	5.13E-05
12	GO:0016987: sigma factor activity	5.13E-05
13	GO:0043022: ribosome binding	2.69E-04
14	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.77E-04
15	GO:0004813: alanine-tRNA ligase activity	2.77E-04
16	GO:0005290: L-histidine transmembrane transporter activity	2.77E-04
17	GO:0004008: copper-exporting ATPase activity	2.77E-04
18	GO:0004325: ferrochelatase activity	2.77E-04
19	GO:0051996: squalene synthase activity	2.77E-04
20	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.77E-04
21	GO:0004830: tryptophan-tRNA ligase activity	2.77E-04
22	GO:0031516: far-red light photoreceptor activity	2.77E-04
23	GO:0016844: strictosidine synthase activity	4.74E-04
24	GO:0009883: red or far-red light photoreceptor activity	6.09E-04
25	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	6.09E-04
26	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.09E-04
27	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	6.09E-04
28	GO:0000064: L-ornithine transmembrane transporter activity	6.09E-04
29	GO:0004829: threonine-tRNA ligase activity	6.09E-04
30	GO:0019156: isoamylase activity	6.09E-04
31	GO:0004802: transketolase activity	6.09E-04
32	GO:0048531: beta-1,3-galactosyltransferase activity	6.09E-04
33	GO:0008728: GTP diphosphokinase activity	6.09E-04
34	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.09E-04
35	GO:0005366: myo-inositol:proton symporter activity	6.09E-04
36	GO:0010291: carotene beta-ring hydroxylase activity	6.09E-04
37	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.28E-04
38	GO:0008430: selenium binding	9.88E-04
39	GO:0004180: carboxypeptidase activity	9.88E-04
40	GO:0032549: ribonucleoside binding	9.88E-04
41	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.88E-04
42	GO:0008020: G-protein coupled photoreceptor activity	9.88E-04
43	GO:0016805: dipeptidase activity	9.88E-04
44	GO:0015189: L-lysine transmembrane transporter activity	1.41E-03
45	GO:0005354: galactose transmembrane transporter activity	1.41E-03
46	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.41E-03
47	GO:0015181: arginine transmembrane transporter activity	1.41E-03
48	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.41E-03
49	GO:0030570: pectate lyase activity	1.83E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.89E-03
51	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.89E-03
52	GO:0070628: proteasome binding	1.89E-03
53	GO:0004506: squalene monooxygenase activity	1.89E-03
54	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.89E-03
55	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.03E-03
56	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.41E-03
57	GO:0008374: O-acyltransferase activity	2.41E-03
58	GO:0003785: actin monomer binding	2.41E-03
59	GO:0005525: GTP binding	2.73E-03
60	GO:0004672: protein kinase activity	2.87E-03
61	GO:0031593: polyubiquitin binding	2.98E-03
62	GO:0004556: alpha-amylase activity	2.98E-03
63	GO:0048038: quinone binding	3.09E-03
64	GO:0046872: metal ion binding	3.32E-03
65	GO:0009927: histidine phosphotransfer kinase activity	3.58E-03
66	GO:0004656: procollagen-proline 4-dioxygenase activity	3.58E-03
67	GO:0004427: inorganic diphosphatase activity	4.23E-03
68	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.39E-03
69	GO:0004871: signal transducer activity	4.65E-03
70	GO:0016829: lyase activity	4.69E-03
71	GO:0008312: 7S RNA binding	4.90E-03
72	GO:0004525: ribonuclease III activity	4.90E-03
73	GO:0015144: carbohydrate transmembrane transporter activity	5.33E-03
74	GO:0008236: serine-type peptidase activity	5.55E-03
75	GO:0005375: copper ion transmembrane transporter activity	5.62E-03
76	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.62E-03
77	GO:0005351: sugar:proton symporter activity	6.20E-03
78	GO:0004568: chitinase activity	7.97E-03
79	GO:0004673: protein histidine kinase activity	7.97E-03
80	GO:0001054: RNA polymerase I activity	8.82E-03
81	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.82E-03
82	GO:0000049: tRNA binding	9.70E-03
83	GO:0000155: phosphorelay sensor kinase activity	1.06E-02
84	GO:0003725: double-stranded RNA binding	1.06E-02
85	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.06E-02
86	GO:0008081: phosphoric diester hydrolase activity	1.06E-02
87	GO:0005506: iron ion binding	1.29E-02
88	GO:0003690: double-stranded DNA binding	1.34E-02
89	GO:0031418: L-ascorbic acid binding	1.46E-02
90	GO:0043130: ubiquitin binding	1.46E-02
91	GO:0016787: hydrolase activity	1.81E-02
92	GO:0016760: cellulose synthase (UDP-forming) activity	1.89E-02
93	GO:0003727: single-stranded RNA binding	2.01E-02
94	GO:0004812: aminoacyl-tRNA ligase activity	2.13E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.15E-02
96	GO:0008536: Ran GTPase binding	2.37E-02
97	GO:0004527: exonuclease activity	2.37E-02
98	GO:0003924: GTPase activity	2.40E-02
99	GO:0005355: glucose transmembrane transporter activity	2.50E-02
100	GO:0010181: FMN binding	2.50E-02
101	GO:0004252: serine-type endopeptidase activity	2.56E-02
102	GO:0019901: protein kinase binding	2.63E-02
103	GO:0004518: nuclease activity	2.89E-02
104	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.97E-02
105	GO:0016759: cellulose synthase activity	3.16E-02
106	GO:0003684: damaged DNA binding	3.16E-02
107	GO:0008237: metallopeptidase activity	3.30E-02
108	GO:0008017: microtubule binding	3.33E-02
109	GO:0016597: amino acid binding	3.44E-02
110	GO:0015250: water channel activity	3.58E-02
111	GO:0003743: translation initiation factor activity	3.72E-02
112	GO:0030247: polysaccharide binding	4.02E-02
113	GO:0042802: identical protein binding	4.04E-02
114	GO:0005096: GTPase activator activity	4.48E-02
115	GO:0004222: metalloendopeptidase activity	4.64E-02
116	GO:0016788: hydrolase activity, acting on ester bonds	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	4.59E-19
3	GO:0009535: chloroplast thylakoid membrane	2.82E-06
4	GO:0031209: SCAR complex	1.18E-04
5	GO:0009570: chloroplast stroma	3.46E-04
6	GO:0046658: anchored component of plasma membrane	3.67E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.99E-04
8	GO:0005773: vacuole	4.62E-04
9	GO:0080085: signal recognition particle, chloroplast targeting	6.09E-04
10	GO:0009574: preprophase band	8.26E-04
11	GO:0033281: TAT protein transport complex	9.88E-04
12	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.89E-03
13	GO:0055035: plastid thylakoid membrane	2.41E-03
14	GO:0031225: anchored component of membrane	2.46E-03
15	GO:0030529: intracellular ribonucleoprotein complex	4.47E-03
16	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.62E-03
17	GO:0005736: DNA-directed RNA polymerase I complex	6.37E-03
18	GO:0016604: nuclear body	7.15E-03
19	GO:0016324: apical plasma membrane	7.97E-03
20	GO:0000311: plastid large ribosomal subunit	9.70E-03
21	GO:0005578: proteinaceous extracellular matrix	1.06E-02
22	GO:0005938: cell cortex	1.06E-02
23	GO:0005856: cytoskeleton	1.07E-02
24	GO:0030176: integral component of endoplasmic reticulum membrane	1.25E-02
25	GO:0031969: chloroplast membrane	1.47E-02
26	GO:0042651: thylakoid membrane	1.56E-02
27	GO:0009532: plastid stroma	1.67E-02
28	GO:0009579: thylakoid	1.86E-02
29	GO:0009536: plastid	1.88E-02
30	GO:0015629: actin cytoskeleton	1.89E-02
31	GO:0005871: kinesin complex	2.13E-02
32	GO:0009295: nucleoid	3.30E-02
33	GO:0009941: chloroplast envelope	3.36E-02
34	GO:0005783: endoplasmic reticulum	3.41E-02
35	GO:0019005: SCF ubiquitin ligase complex	4.33E-02
36	GO:0009707: chloroplast outer membrane	4.33E-02
37	GO:0015934: large ribosomal subunit	4.79E-02