Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G23500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0061157: mRNA destabilization0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0019323: pentose catabolic process0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0090071: negative regulation of ribosome biogenesis0.00E+00
7GO:0015805: S-adenosyl-L-methionine transport0.00E+00
8GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
9GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
10GO:0042407: cristae formation0.00E+00
11GO:0007638: mechanosensory behavior0.00E+00
12GO:0009733: response to auxin7.73E-07
13GO:0046620: regulation of organ growth1.34E-06
14GO:0009734: auxin-activated signaling pathway2.50E-06
15GO:0040008: regulation of growth1.65E-05
16GO:0010020: chloroplast fission2.48E-05
17GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.21E-05
18GO:0015995: chlorophyll biosynthetic process8.17E-05
19GO:0046739: transport of virus in multicellular host1.34E-04
20GO:0009640: photomorphogenesis2.81E-04
21GO:2000012: regulation of auxin polar transport3.17E-04
22GO:0016123: xanthophyll biosynthetic process3.42E-04
23GO:0048497: maintenance of floral organ identity3.42E-04
24GO:0009658: chloroplast organization3.78E-04
25GO:0009793: embryo development ending in seed dormancy4.39E-04
26GO:0042793: transcription from plastid promoter4.78E-04
27GO:0016554: cytidine to uridine editing4.78E-04
28GO:0030488: tRNA methylation6.32E-04
29GO:1902458: positive regulation of stomatal opening6.78E-04
30GO:0015904: tetracycline transport6.78E-04
31GO:0005991: trehalose metabolic process6.78E-04
32GO:0000025: maltose catabolic process6.78E-04
33GO:0070509: calcium ion import6.78E-04
34GO:0044262: cellular carbohydrate metabolic process6.78E-04
35GO:0005980: glycogen catabolic process6.78E-04
36GO:0030198: extracellular matrix organization6.78E-04
37GO:0006438: valyl-tRNA aminoacylation6.78E-04
38GO:0010442: guard cell morphogenesis6.78E-04
39GO:0046520: sphingoid biosynthetic process6.78E-04
40GO:0010480: microsporocyte differentiation6.78E-04
41GO:0006426: glycyl-tRNA aminoacylation6.78E-04
42GO:0042759: long-chain fatty acid biosynthetic process6.78E-04
43GO:0009742: brassinosteroid mediated signaling pathway1.03E-03
44GO:0010497: plasmodesmata-mediated intercellular transport1.22E-03
45GO:0006631: fatty acid metabolic process1.34E-03
46GO:0010182: sugar mediated signaling pathway1.39E-03
47GO:1903426: regulation of reactive oxygen species biosynthetic process1.46E-03
48GO:0006568: tryptophan metabolic process1.46E-03
49GO:2000123: positive regulation of stomatal complex development1.46E-03
50GO:0010275: NAD(P)H dehydrogenase complex assembly1.46E-03
51GO:0052541: plant-type cell wall cellulose metabolic process1.46E-03
52GO:1901529: positive regulation of anion channel activity1.46E-03
53GO:0019388: galactose catabolic process1.46E-03
54GO:0048255: mRNA stabilization1.46E-03
55GO:0018026: peptidyl-lysine monomethylation1.46E-03
56GO:0071497: cellular response to freezing1.46E-03
57GO:1900033: negative regulation of trichome patterning1.46E-03
58GO:0006423: cysteinyl-tRNA aminoacylation1.46E-03
59GO:0009786: regulation of asymmetric cell division1.46E-03
60GO:0031648: protein destabilization1.46E-03
61GO:0009926: auxin polar transport1.52E-03
62GO:0009638: phototropism1.73E-03
63GO:0006779: porphyrin-containing compound biosynthetic process1.73E-03
64GO:1900865: chloroplast RNA modification1.73E-03
65GO:0010583: response to cyclopentenone1.98E-03
66GO:0006949: syncytium formation2.03E-03
67GO:0006782: protoporphyrinogen IX biosynthetic process2.03E-03
68GO:0048829: root cap development2.03E-03
69GO:0009641: shade avoidance2.03E-03
70GO:0009828: plant-type cell wall loosening2.33E-03
71GO:0045910: negative regulation of DNA recombination2.41E-03
72GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.41E-03
73GO:0033591: response to L-ascorbic acid2.41E-03
74GO:1902448: positive regulation of shade avoidance2.41E-03
75GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process2.41E-03
76GO:0006696: ergosterol biosynthetic process2.41E-03
77GO:0005983: starch catabolic process2.69E-03
78GO:0010027: thylakoid membrane organization2.93E-03
79GO:0010588: cotyledon vascular tissue pattern formation3.06E-03
80GO:0010102: lateral root morphogenesis3.06E-03
81GO:0006006: glucose metabolic process3.06E-03
82GO:0007231: osmosensory signaling pathway3.51E-03
83GO:0009102: biotin biosynthetic process3.51E-03
84GO:0009052: pentose-phosphate shunt, non-oxidative branch3.51E-03
85GO:0009647: skotomorphogenesis3.51E-03
86GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.51E-03
87GO:0009590: detection of gravity3.51E-03
88GO:0010088: phloem development3.51E-03
89GO:0043572: plastid fission3.51E-03
90GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis3.51E-03
91GO:0070588: calcium ion transmembrane transport3.88E-03
92GO:0010109: regulation of photosynthesis4.74E-03
93GO:0009765: photosynthesis, light harvesting4.74E-03
94GO:0033500: carbohydrate homeostasis4.74E-03
95GO:2000038: regulation of stomatal complex development4.74E-03
96GO:0022622: root system development4.74E-03
97GO:0042991: transcription factor import into nucleus4.74E-03
98GO:0006808: regulation of nitrogen utilization4.74E-03
99GO:1901141: regulation of lignin biosynthetic process4.74E-03
100GO:0048629: trichome patterning4.74E-03
101GO:0019953: sexual reproduction5.32E-03
102GO:0007094: mitotic spindle assembly checkpoint6.09E-03
103GO:0000304: response to singlet oxygen6.09E-03
104GO:0010375: stomatal complex patterning6.09E-03
105GO:0016120: carotene biosynthetic process6.09E-03
106GO:0045038: protein import into chloroplast thylakoid membrane6.09E-03
107GO:0006468: protein phosphorylation6.90E-03
108GO:0009790: embryo development7.41E-03
109GO:0009913: epidermal cell differentiation7.56E-03
110GO:1902456: regulation of stomatal opening7.56E-03
111GO:0033365: protein localization to organelle7.56E-03
112GO:0018258: protein O-linked glycosylation via hydroxyproline7.56E-03
113GO:0010405: arabinogalactan protein metabolic process7.56E-03
114GO:0080086: stamen filament development9.15E-03
115GO:0042372: phylloquinone biosynthetic process9.15E-03
116GO:0006458: 'de novo' protein folding9.15E-03
117GO:0017148: negative regulation of translation9.15E-03
118GO:0042026: protein refolding9.15E-03
119GO:2000033: regulation of seed dormancy process9.15E-03
120GO:0010305: leaf vascular tissue pattern formation9.67E-03
121GO:0009664: plant-type cell wall organization1.04E-02
122GO:0045892: negative regulation of transcription, DNA-templated1.08E-02
123GO:0045995: regulation of embryonic development1.09E-02
124GO:0048528: post-embryonic root development1.09E-02
125GO:1900056: negative regulation of leaf senescence1.09E-02
126GO:0010098: suspensor development1.09E-02
127GO:0048437: floral organ development1.09E-02
128GO:0010444: guard mother cell differentiation1.09E-02
129GO:0030307: positive regulation of cell growth1.09E-02
130GO:0032880: regulation of protein localization1.09E-02
131GO:0048825: cotyledon development1.12E-02
132GO:0009736: cytokinin-activated signaling pathway1.14E-02
133GO:0007166: cell surface receptor signaling pathway1.17E-02
134GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.20E-02
135GO:0001522: pseudouridine synthesis1.27E-02
136GO:0005978: glycogen biosynthetic process1.27E-02
137GO:0006605: protein targeting1.27E-02
138GO:2000070: regulation of response to water deprivation1.27E-02
139GO:0070413: trehalose metabolism in response to stress1.27E-02
140GO:0000105: histidine biosynthetic process1.27E-02
141GO:0009231: riboflavin biosynthetic process1.27E-02
142GO:0032502: developmental process1.28E-02
143GO:0016042: lipid catabolic process1.44E-02
144GO:0015996: chlorophyll catabolic process1.46E-02
145GO:0007186: G-protein coupled receptor signaling pathway1.46E-02
146GO:0006526: arginine biosynthetic process1.46E-02
147GO:0032544: plastid translation1.46E-02
148GO:0009416: response to light stimulus1.47E-02
149GO:0006351: transcription, DNA-templated1.53E-02
150GO:0048364: root development1.63E-02
151GO:0009835: fruit ripening1.66E-02
152GO:0051865: protein autoubiquitination1.66E-02
153GO:0046916: cellular transition metal ion homeostasis1.66E-02
154GO:0048507: meristem development1.66E-02
155GO:0000902: cell morphogenesis1.66E-02
156GO:0009826: unidimensional cell growth1.75E-02
157GO:0043067: regulation of programmed cell death1.86E-02
158GO:0009098: leucine biosynthetic process1.86E-02
159GO:0007346: regulation of mitotic cell cycle1.86E-02
160GO:0006298: mismatch repair2.08E-02
161GO:0010162: seed dormancy process2.08E-02
162GO:0009817: defense response to fungus, incompatible interaction2.28E-02
163GO:0006816: calcium ion transport2.31E-02
164GO:0009073: aromatic amino acid family biosynthetic process2.31E-02
165GO:0018119: peptidyl-cysteine S-nitrosylation2.31E-02
166GO:0048229: gametophyte development2.31E-02
167GO:0000160: phosphorelay signal transduction system2.39E-02
168GO:0009813: flavonoid biosynthetic process2.39E-02
169GO:0012501: programmed cell death2.54E-02
170GO:0045037: protein import into chloroplast stroma2.54E-02
171GO:0006508: proteolysis2.73E-02
172GO:0030154: cell differentiation2.75E-02
173GO:0006865: amino acid transport2.76E-02
174GO:0010075: regulation of meristem growth2.79E-02
175GO:0009725: response to hormone2.79E-02
176GO:0030048: actin filament-based movement2.79E-02
177GO:0010628: positive regulation of gene expression2.79E-02
178GO:0009785: blue light signaling pathway2.79E-02
179GO:0009691: cytokinin biosynthetic process2.79E-02
180GO:0050826: response to freezing2.79E-02
181GO:0009266: response to temperature stimulus3.04E-02
182GO:0009934: regulation of meristem structural organization3.04E-02
183GO:0010207: photosystem II assembly3.04E-02
184GO:0007034: vacuolar transport3.04E-02
185GO:0006633: fatty acid biosynthetic process3.15E-02
186GO:0030001: metal ion transport3.29E-02
187GO:0090351: seedling development3.29E-02
188GO:0010030: positive regulation of seed germination3.29E-02
189GO:0006071: glycerol metabolic process3.56E-02
190GO:0006833: water transport3.56E-02
191GO:0000162: tryptophan biosynthetic process3.56E-02
192GO:0010025: wax biosynthetic process3.56E-02
193GO:0009451: RNA modification3.65E-02
194GO:0080147: root hair cell development3.83E-02
195GO:0005992: trehalose biosynthetic process3.83E-02
196GO:0006418: tRNA aminoacylation for protein translation4.11E-02
197GO:0010026: trichome differentiation4.11E-02
198GO:0007017: microtubule-based process4.11E-02
199GO:0048511: rhythmic process4.40E-02
200GO:0061077: chaperone-mediated protein folding4.40E-02
201GO:0031408: oxylipin biosynthetic process4.40E-02
202GO:0003333: amino acid transmembrane transport4.40E-02
203GO:0030245: cellulose catabolic process4.69E-02
204GO:2000022: regulation of jasmonic acid mediated signaling pathway4.69E-02
205GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.98E-02
206GO:0010082: regulation of root meristem growth4.98E-02
207GO:0009693: ethylene biosynthetic process4.98E-02
RankGO TermAdjusted P value
1GO:0005201: extracellular matrix structural constituent0.00E+00
2GO:0004076: biotin synthase activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0047661: amino-acid racemase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
9GO:0015267: channel activity0.00E+00
10GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
11GO:0005504: fatty acid binding6.44E-05
12GO:0001872: (1->3)-beta-D-glucan binding1.34E-04
13GO:0043023: ribosomal large subunit binding1.34E-04
14GO:0045430: chalcone isomerase activity2.28E-04
15GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity6.78E-04
16GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity6.78E-04
17GO:0000170: sphingosine hydroxylase activity6.78E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity6.78E-04
19GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity6.78E-04
20GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity6.78E-04
21GO:0004425: indole-3-glycerol-phosphate synthase activity6.78E-04
22GO:0008184: glycogen phosphorylase activity6.78E-04
23GO:0004134: 4-alpha-glucanotransferase activity6.78E-04
24GO:0004645: phosphorylase activity6.78E-04
25GO:0009374: biotin binding6.78E-04
26GO:0050308: sugar-phosphatase activity6.78E-04
27GO:0019203: carbohydrate phosphatase activity6.78E-04
28GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity6.78E-04
29GO:0004832: valine-tRNA ligase activity6.78E-04
30GO:0052381: tRNA dimethylallyltransferase activity6.78E-04
31GO:0004820: glycine-tRNA ligase activity6.78E-04
32GO:0004176: ATP-dependent peptidase activity7.42E-04
33GO:0001085: RNA polymerase II transcription factor binding1.39E-03
34GO:0004817: cysteine-tRNA ligase activity1.46E-03
35GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.46E-03
36GO:0004750: ribulose-phosphate 3-epimerase activity1.46E-03
37GO:0016630: protochlorophyllide reductase activity1.46E-03
38GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.46E-03
39GO:0004614: phosphoglucomutase activity1.46E-03
40GO:0042284: sphingolipid delta-4 desaturase activity1.46E-03
41GO:0008493: tetracycline transporter activity1.46E-03
42GO:0003852: 2-isopropylmalate synthase activity1.46E-03
43GO:0043621: protein self-association1.71E-03
44GO:0004519: endonuclease activity1.76E-03
45GO:0015462: ATPase-coupled protein transmembrane transporter activity2.41E-03
46GO:0004180: carboxypeptidase activity2.41E-03
47GO:0070330: aromatase activity2.41E-03
48GO:0017150: tRNA dihydrouridine synthase activity2.41E-03
49GO:0016805: dipeptidase activity2.41E-03
50GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.41E-03
51GO:0008237: metallopeptidase activity2.52E-03
52GO:0005262: calcium channel activity3.06E-03
53GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity3.51E-03
54GO:0016851: magnesium chelatase activity3.51E-03
55GO:0005524: ATP binding3.69E-03
56GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed4.74E-03
57GO:0019199: transmembrane receptor protein kinase activity4.74E-03
58GO:0016279: protein-lysine N-methyltransferase activity4.74E-03
59GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.97E-03
60GO:0009055: electron carrier activity5.52E-03
61GO:0004674: protein serine/threonine kinase activity5.89E-03
62GO:0005515: protein binding5.92E-03
63GO:0003989: acetyl-CoA carboxylase activity6.09E-03
64GO:0018685: alkane 1-monooxygenase activity6.09E-03
65GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding7.13E-03
66GO:0003723: RNA binding7.14E-03
67GO:0046983: protein dimerization activity7.48E-03
68GO:2001070: starch binding7.56E-03
69GO:0030983: mismatched DNA binding7.56E-03
70GO:1990714: hydroxyproline O-galactosyltransferase activity7.56E-03
71GO:0016208: AMP binding7.56E-03
72GO:0003727: single-stranded RNA binding7.62E-03
73GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.59E-03
74GO:0051920: peroxiredoxin activity9.15E-03
75GO:0016832: aldehyde-lyase activity9.15E-03
76GO:0004723: calcium-dependent protein serine/threonine phosphatase activity9.15E-03
77GO:0042803: protein homodimerization activity1.14E-02
78GO:0030674: protein binding, bridging1.27E-02
79GO:0016209: antioxidant activity1.27E-02
80GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity1.27E-02
81GO:0000156: phosphorelay response regulator activity1.37E-02
82GO:0046914: transition metal ion binding1.46E-02
83GO:0008173: RNA methyltransferase activity1.46E-02
84GO:0016791: phosphatase activity1.46E-02
85GO:0008889: glycerophosphodiester phosphodiesterase activity1.66E-02
86GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.66E-02
87GO:0030247: polysaccharide binding2.05E-02
88GO:0044183: protein binding involved in protein folding2.31E-02
89GO:0047372: acylglycerol lipase activity2.31E-02
90GO:0005089: Rho guanyl-nucleotide exchange factor activity2.31E-02
91GO:0004222: metalloendopeptidase activity2.51E-02
92GO:0030170: pyridoxal phosphate binding2.70E-02
93GO:0009982: pseudouridine synthase activity2.79E-02
94GO:0003725: double-stranded RNA binding2.79E-02
95GO:0015266: protein channel activity2.79E-02
96GO:0005507: copper ion binding2.87E-02
97GO:0003746: translation elongation factor activity2.89E-02
98GO:0052689: carboxylic ester hydrolase activity2.96E-02
99GO:0003774: motor activity3.04E-02
100GO:0008083: growth factor activity3.04E-02
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.04E-02
102GO:0008266: poly(U) RNA binding3.04E-02
103GO:0016887: ATPase activity3.18E-02
104GO:0003712: transcription cofactor activity3.29E-02
105GO:0008146: sulfotransferase activity3.29E-02
106GO:0004190: aspartic-type endopeptidase activity3.29E-02
107GO:0004871: signal transducer activity3.56E-02
108GO:0005528: FK506 binding3.83E-02
109GO:0051536: iron-sulfur cluster binding3.83E-02
110GO:0035091: phosphatidylinositol binding4.02E-02
111GO:0043424: protein histidine kinase binding4.11E-02
112GO:0005198: structural molecule activity4.18E-02
113GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.34E-02
114GO:0033612: receptor serine/threonine kinase binding4.40E-02
115GO:0042802: identical protein binding4.76E-02
116GO:0003700: transcription factor activity, sequence-specific DNA binding4.85E-02
117GO:0008810: cellulase activity4.98E-02
118GO:0004672: protein kinase activity4.99E-02
RankGO TermAdjusted P value
1GO:0009570: chloroplast stroma6.57E-13
2GO:0009507: chloroplast1.91E-12
3GO:0009941: chloroplast envelope6.60E-09
4GO:0009534: chloroplast thylakoid8.17E-08
5GO:0046658: anchored component of plasma membrane6.91E-06
6GO:0010319: stromule3.94E-04
7GO:0005886: plasma membrane6.44E-04
8GO:0031225: anchored component of membrane6.53E-04
9GO:0000427: plastid-encoded plastid RNA polymerase complex1.46E-03
10GO:0031357: integral component of chloroplast inner membrane1.46E-03
11GO:0009528: plastid inner membrane2.41E-03
12GO:0019897: extrinsic component of plasma membrane2.41E-03
13GO:0010007: magnesium chelatase complex2.41E-03
14GO:0030139: endocytic vesicle2.41E-03
15GO:0009317: acetyl-CoA carboxylase complex2.41E-03
16GO:0009508: plastid chromosome3.06E-03
17GO:0005667: transcription factor complex3.37E-03
18GO:0032585: multivesicular body membrane3.51E-03
19GO:0009527: plastid outer membrane4.74E-03
20GO:0030286: dynein complex4.74E-03
21GO:0005828: kinetochore microtubule4.74E-03
22GO:0009532: plastid stroma5.85E-03
23GO:0009536: plastid6.04E-03
24GO:0000776: kinetochore6.09E-03
25GO:0000793: condensed chromosome7.56E-03
26GO:0010369: chromocenter9.15E-03
27GO:0000777: condensed chromosome kinetochore9.15E-03
28GO:0000815: ESCRT III complex9.15E-03
29GO:0009533: chloroplast stromal thylakoid1.09E-02
30GO:0009986: cell surface1.09E-02
31GO:0000794: condensed nuclear chromosome1.09E-02
32GO:0009501: amyloplast1.27E-02
33GO:0009295: nucleoid1.55E-02
34GO:0005876: spindle microtubule1.86E-02
35GO:0009579: thylakoid2.07E-02
36GO:0000418: DNA-directed RNA polymerase IV complex2.08E-02
37GO:0016459: myosin complex2.08E-02
38GO:0009707: chloroplast outer membrane2.28E-02
39GO:0090404: pollen tube tip2.31E-02
40GO:0005884: actin filament2.31E-02
41GO:0009543: chloroplast thylakoid lumen2.37E-02
42GO:0031969: chloroplast membrane2.55E-02
43GO:0009535: chloroplast thylakoid membrane2.65E-02
44GO:0030095: chloroplast photosystem II3.04E-02
45GO:0031977: thylakoid lumen3.43E-02
46GO:0043234: protein complex3.56E-02
47GO:0009654: photosystem II oxygen evolving complex4.11E-02
48GO:0042651: thylakoid membrane4.11E-02
49GO:0015629: actin cytoskeleton4.98E-02
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Gene type



Gene DE type