co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0006573: valine metabolic process	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0045038: protein import into chloroplast thylakoid membrane	2.35E-05
7	GO:0072387: flavin adenine dinucleotide metabolic process	1.31E-04
8	GO:2000021: regulation of ion homeostasis	1.31E-04
9	GO:0070574: cadmium ion transmembrane transport	1.31E-04
10	GO:0051247: positive regulation of protein metabolic process	1.31E-04
11	GO:1902458: positive regulation of stomatal opening	1.31E-04
12	GO:2000905: negative regulation of starch metabolic process	1.31E-04
13	GO:0006419: alanyl-tRNA aminoacylation	1.31E-04
14	GO:0015969: guanosine tetraphosphate metabolic process	1.31E-04
15	GO:0043266: regulation of potassium ion transport	1.31E-04
16	GO:0006551: leucine metabolic process	1.31E-04
17	GO:0000373: Group II intron splicing	1.34E-04
18	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.03E-04
19	GO:0010024: phytochromobilin biosynthetic process	3.03E-04
20	GO:0010343: singlet oxygen-mediated programmed cell death	3.03E-04
21	GO:1901529: positive regulation of anion channel activity	3.03E-04
22	GO:0060359: response to ammonium ion	3.03E-04
23	GO:0048255: mRNA stabilization	3.03E-04
24	GO:1900871: chloroplast mRNA modification	3.03E-04
25	GO:0010617: circadian regulation of calcium ion oscillation	3.03E-04
26	GO:0099402: plant organ development	3.03E-04
27	GO:0009658: chloroplast organization	4.78E-04
28	GO:0043157: response to cation stress	4.99E-04
29	GO:0005977: glycogen metabolic process	4.99E-04
30	GO:1902448: positive regulation of shade avoidance	4.99E-04
31	GO:0006788: heme oxidation	4.99E-04
32	GO:1901672: positive regulation of systemic acquired resistance	4.99E-04
33	GO:0048586: regulation of long-day photoperiodism, flowering	4.99E-04
34	GO:0010623: programmed cell death involved in cell development	4.99E-04
35	GO:0090153: regulation of sphingolipid biosynthetic process	4.99E-04
36	GO:2001141: regulation of RNA biosynthetic process	7.14E-04
37	GO:0090308: regulation of methylation-dependent chromatin silencing	7.14E-04
38	GO:0046836: glycolipid transport	7.14E-04
39	GO:0019048: modulation by virus of host morphology or physiology	7.14E-04
40	GO:0031048: chromatin silencing by small RNA	7.14E-04
41	GO:0009226: nucleotide-sugar biosynthetic process	7.14E-04
42	GO:1901332: negative regulation of lateral root development	7.14E-04
43	GO:0048442: sepal development	9.47E-04
44	GO:0051322: anaphase	9.47E-04
45	GO:2000306: positive regulation of photomorphogenesis	9.47E-04
46	GO:0051567: histone H3-K9 methylation	9.47E-04
47	GO:0010508: positive regulation of autophagy	9.47E-04
48	GO:1902347: response to strigolactone	9.47E-04
49	GO:0010021: amylopectin biosynthetic process	9.47E-04
50	GO:0007059: chromosome segregation	9.69E-04
51	GO:0016123: xanthophyll biosynthetic process	1.20E-03
52	GO:0080110: sporopollenin biosynthetic process	1.20E-03
53	GO:0010117: photoprotection	1.20E-03
54	GO:0046283: anthocyanin-containing compound metabolic process	1.20E-03
55	GO:0009959: negative gravitropism	1.47E-03
56	GO:0006555: methionine metabolic process	1.47E-03
57	GO:1901371: regulation of leaf morphogenesis	1.47E-03
58	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.47E-03
59	GO:0060918: auxin transport	1.47E-03
60	GO:0010190: cytochrome b6f complex assembly	1.47E-03
61	GO:0016458: gene silencing	1.47E-03
62	GO:0010310: regulation of hydrogen peroxide metabolic process	1.76E-03
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.76E-03
64	GO:0010076: maintenance of floral meristem identity	1.76E-03
65	GO:0009082: branched-chain amino acid biosynthetic process	1.76E-03
66	GO:0009099: valine biosynthetic process	1.76E-03
67	GO:0006955: immune response	2.06E-03
68	GO:0009395: phospholipid catabolic process	2.06E-03
69	GO:0006400: tRNA modification	2.06E-03
70	GO:0051510: regulation of unidimensional cell growth	2.06E-03
71	GO:0045010: actin nucleation	2.39E-03
72	GO:0048564: photosystem I assembly	2.39E-03
73	GO:0042255: ribosome assembly	2.39E-03
74	GO:0006353: DNA-templated transcription, termination	2.39E-03
75	GO:0006875: cellular metal ion homeostasis	2.39E-03
76	GO:2000070: regulation of response to water deprivation	2.39E-03
77	GO:0009793: embryo development ending in seed dormancy	2.61E-03
78	GO:0071482: cellular response to light stimulus	2.73E-03
79	GO:0009097: isoleucine biosynthetic process	2.73E-03
80	GO:0009821: alkaloid biosynthetic process	3.08E-03
81	GO:1900426: positive regulation of defense response to bacterium	3.46E-03
82	GO:0009638: phototropism	3.46E-03
83	GO:0035999: tetrahydrofolate interconversion	3.46E-03
84	GO:0009086: methionine biosynthetic process	3.46E-03
85	GO:0009644: response to high light intensity	3.59E-03
86	GO:0030422: production of siRNA involved in RNA interference	3.84E-03
87	GO:0006259: DNA metabolic process	3.84E-03
88	GO:0048441: petal development	3.84E-03
89	GO:0010216: maintenance of DNA methylation	4.24E-03
90	GO:0006265: DNA topological change	4.24E-03
91	GO:0006352: DNA-templated transcription, initiation	4.24E-03
92	GO:0005975: carbohydrate metabolic process	4.28E-03
93	GO:0015979: photosynthesis	4.50E-03
94	GO:0045037: protein import into chloroplast stroma	4.65E-03
95	GO:0030036: actin cytoskeleton organization	5.08E-03
96	GO:0010075: regulation of meristem growth	5.08E-03
97	GO:0009785: blue light signaling pathway	5.08E-03
98	GO:0009934: regulation of meristem structural organization	5.52E-03
99	GO:0048440: carpel development	5.52E-03
100	GO:0010207: photosystem II assembly	5.52E-03
101	GO:2000377: regulation of reactive oxygen species metabolic process	6.91E-03
102	GO:0010431: seed maturation	7.91E-03
103	GO:0006306: DNA methylation	7.91E-03
104	GO:0031408: oxylipin biosynthetic process	7.91E-03
105	GO:0016998: cell wall macromolecule catabolic process	7.91E-03
106	GO:0030245: cellulose catabolic process	8.42E-03
107	GO:0006730: one-carbon metabolic process	8.42E-03
108	GO:0010089: xylem development	9.49E-03
109	GO:0010584: pollen exine formation	9.49E-03
110	GO:0048443: stamen development	9.49E-03
111	GO:0019722: calcium-mediated signaling	9.49E-03
112	GO:0009306: protein secretion	9.49E-03
113	GO:0010118: stomatal movement	1.06E-02
114	GO:0008033: tRNA processing	1.06E-02
115	GO:0048868: pollen tube development	1.12E-02
116	GO:0006342: chromatin silencing	1.12E-02
117	GO:0009451: RNA modification	1.12E-02
118	GO:0045489: pectin biosynthetic process	1.12E-02
119	GO:0042752: regulation of circadian rhythm	1.18E-02
120	GO:0009646: response to absence of light	1.18E-02
121	GO:0055072: iron ion homeostasis	1.24E-02
122	GO:0019252: starch biosynthetic process	1.24E-02
123	GO:0032502: developmental process	1.36E-02
124	GO:0009630: gravitropism	1.36E-02
125	GO:0010583: response to cyclopentenone	1.36E-02
126	GO:0016032: viral process	1.36E-02
127	GO:0010090: trichome morphogenesis	1.42E-02
128	GO:0006508: proteolysis	1.46E-02
129	GO:0007267: cell-cell signaling	1.55E-02
130	GO:0051607: defense response to virus	1.62E-02
131	GO:0000910: cytokinesis	1.62E-02
132	GO:0016126: sterol biosynthetic process	1.68E-02
133	GO:0010027: thylakoid membrane organization	1.68E-02
134	GO:0010029: regulation of seed germination	1.75E-02
135	GO:0009816: defense response to bacterium, incompatible interaction	1.75E-02
136	GO:0018298: protein-chromophore linkage	2.03E-02
137	GO:0010218: response to far red light	2.18E-02
138	GO:0009637: response to blue light	2.41E-02
139	GO:0006839: mitochondrial transport	2.64E-02
140	GO:0030001: metal ion transport	2.64E-02
141	GO:0010114: response to red light	2.88E-02
142	GO:0051707: response to other organism	2.88E-02
143	GO:0009640: photomorphogenesis	2.88E-02
144	GO:0042546: cell wall biogenesis	2.96E-02
145	GO:0006629: lipid metabolic process	3.12E-02
146	GO:0071555: cell wall organization	3.14E-02
147	GO:0000165: MAPK cascade	3.30E-02
148	GO:0042538: hyperosmotic salinity response	3.39E-02
149	GO:0006364: rRNA processing	3.56E-02
150	GO:0051603: proteolysis involved in cellular protein catabolic process	3.65E-02
151	GO:0006417: regulation of translation	3.83E-02
152	GO:0006952: defense response	3.93E-02
153	GO:0006096: glycolytic process	4.01E-02
154	GO:0048316: seed development	4.11E-02
155	GO:0016569: covalent chromatin modification	4.39E-02
156	GO:0009740: gibberellic acid mediated signaling pathway	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0004462: lactoylglutathione lyase activity	3.53E-05
3	GO:0043022: ribosome binding	8.68E-05
4	GO:0042834: peptidoglycan binding	1.31E-04
5	GO:0004813: alanine-tRNA ligase activity	1.31E-04
6	GO:0003984: acetolactate synthase activity	1.31E-04
7	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.31E-04
8	GO:0008158: hedgehog receptor activity	1.31E-04
9	GO:0004222: metalloendopeptidase activity	2.20E-04
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.03E-04
11	GO:0003988: acetyl-CoA C-acyltransferase activity	3.03E-04
12	GO:0048531: beta-1,3-galactosyltransferase activity	3.03E-04
13	GO:0019156: isoamylase activity	3.03E-04
14	GO:0008728: GTP diphosphokinase activity	3.03E-04
15	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.34E-04
16	GO:0004180: carboxypeptidase activity	4.99E-04
17	GO:0009882: blue light photoreceptor activity	7.14E-04
18	GO:0017089: glycolipid transporter activity	7.14E-04
19	GO:0035197: siRNA binding	7.14E-04
20	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.14E-04
21	GO:0015086: cadmium ion transmembrane transporter activity	7.14E-04
22	GO:0001053: plastid sigma factor activity	9.47E-04
23	GO:0051861: glycolipid binding	9.47E-04
24	GO:0016987: sigma factor activity	9.47E-04
25	GO:0004392: heme oxygenase (decyclizing) activity	9.47E-04
26	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.20E-03
27	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.20E-03
28	GO:0008200: ion channel inhibitor activity	1.47E-03
29	GO:0004556: alpha-amylase activity	1.47E-03
30	GO:0016597: amino acid binding	1.49E-03
31	GO:0008195: phosphatidate phosphatase activity	1.76E-03
32	GO:0015103: inorganic anion transmembrane transporter activity	2.06E-03
33	GO:0003993: acid phosphatase activity	2.70E-03
34	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.73E-03
35	GO:0071949: FAD binding	3.08E-03
36	GO:0030955: potassium ion binding	3.46E-03
37	GO:0016844: strictosidine synthase activity	3.46E-03
38	GO:0004743: pyruvate kinase activity	3.46E-03
39	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.24E-03
40	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.32E-03
41	GO:0003690: double-stranded DNA binding	4.62E-03
42	GO:0004521: endoribonuclease activity	4.65E-03
43	GO:0000049: tRNA binding	4.65E-03
44	GO:0008081: phosphoric diester hydrolase activity	5.08E-03
45	GO:0004176: ATP-dependent peptidase activity	7.91E-03
46	GO:0033612: receptor serine/threonine kinase binding	7.91E-03
47	GO:0008810: cellulase activity	8.95E-03
48	GO:0003727: single-stranded RNA binding	9.49E-03
49	GO:0003723: RNA binding	1.04E-02
50	GO:0046873: metal ion transmembrane transporter activity	1.12E-02
51	GO:0050662: coenzyme binding	1.18E-02
52	GO:0019901: protein kinase binding	1.24E-02
53	GO:0042802: identical protein binding	1.40E-02
54	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.55E-02
55	GO:0008237: metallopeptidase activity	1.55E-02
56	GO:0016788: hydrolase activity, acting on ester bonds	1.74E-02
57	GO:0008236: serine-type peptidase activity	1.96E-02
58	GO:0005525: GTP binding	2.43E-02
59	GO:0005509: calcium ion binding	2.84E-02
60	GO:0004185: serine-type carboxypeptidase activity	2.88E-02
61	GO:0043621: protein self-association	3.05E-02
62	GO:0004519: endonuclease activity	3.40E-02
63	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.56E-02
64	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.11E-02
65	GO:0016491: oxidoreductase activity	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	7.27E-12
4	GO:0080085: signal recognition particle, chloroplast targeting	3.03E-04
5	GO:0046658: anchored component of plasma membrane	3.74E-04
6	GO:0005773: vacuole	4.81E-04
7	GO:0016605: PML body	4.99E-04
8	GO:0033281: TAT protein transport complex	4.99E-04
9	GO:0042651: thylakoid membrane	5.12E-04
10	GO:0005719: nuclear euchromatin	7.14E-04
11	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	9.47E-04
12	GO:0031209: SCAR complex	1.47E-03
13	GO:0030529: intracellular ribonucleoprotein complex	1.58E-03
14	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.73E-03
15	GO:0005720: nuclear heterochromatin	3.08E-03
16	GO:0015030: Cajal body	3.46E-03
17	GO:0016604: nuclear body	3.46E-03
18	GO:0009574: preprophase band	5.08E-03
19	GO:0031225: anchored component of membrane	5.56E-03
20	GO:0030176: integral component of endoplasmic reticulum membrane	5.97E-03
21	GO:0009706: chloroplast inner membrane	6.35E-03
22	GO:0009654: photosystem II oxygen evolving complex	7.40E-03
23	GO:0005623: cell	8.17E-03
24	GO:0009535: chloroplast thylakoid membrane	8.43E-03
25	GO:0019898: extrinsic component of membrane	1.24E-02
26	GO:0009295: nucleoid	1.55E-02
27	GO:0019005: SCF ubiquitin ligase complex	2.03E-02
28	GO:0000325: plant-type vacuole	2.25E-02
29	GO:0009536: plastid	4.04E-02
30	GO:0009505: plant-type cell wall	4.15E-02
31	GO:0012505: endomembrane system	4.48E-02