co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:0090391: granum assembly	2.51E-06
5	GO:0009773: photosynthetic electron transport in photosystem I	3.62E-06
6	GO:0006094: gluconeogenesis	5.86E-06
7	GO:0006636: unsaturated fatty acid biosynthetic process	1.08E-05
8	GO:0055114: oxidation-reduction process	2.83E-05
9	GO:0006096: glycolytic process	4.49E-05
10	GO:0006098: pentose-phosphate shunt	1.08E-04
11	GO:0046467: membrane lipid biosynthetic process	1.14E-04
12	GO:0015671: oxygen transport	1.14E-04
13	GO:0080093: regulation of photorespiration	1.14E-04
14	GO:0031998: regulation of fatty acid beta-oxidation	1.14E-04
15	GO:0071277: cellular response to calcium ion	1.14E-04
16	GO:0006633: fatty acid biosynthetic process	1.45E-04
17	GO:0006631: fatty acid metabolic process	2.57E-04
18	GO:0071457: cellular response to ozone	2.65E-04
19	GO:0010207: photosystem II assembly	2.74E-04
20	GO:0010143: cutin biosynthetic process	2.74E-04
21	GO:0010025: wax biosynthetic process	3.44E-04
22	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.29E-04
23	GO:0071484: cellular response to light intensity	6.29E-04
24	GO:0042335: cuticle development	6.98E-04
25	GO:0006021: inositol biosynthetic process	8.35E-04
26	GO:0071486: cellular response to high light intensity	8.35E-04
27	GO:0006097: glyoxylate cycle	1.05E-03
28	GO:0071493: cellular response to UV-B	1.05E-03
29	GO:0051607: defense response to virus	1.23E-03
30	GO:0009972: cytidine deamination	1.29E-03
31	GO:0042549: photosystem II stabilization	1.29E-03
32	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.29E-03
33	GO:0010027: thylakoid membrane organization	1.30E-03
34	GO:0015995: chlorophyll biosynthetic process	1.53E-03
35	GO:0010189: vitamin E biosynthetic process	1.54E-03
36	GO:0009854: oxidative photosynthetic carbon pathway	1.54E-03
37	GO:0009395: phospholipid catabolic process	1.81E-03
38	GO:0010196: nonphotochemical quenching	1.81E-03
39	GO:0009704: de-etiolation	2.09E-03
40	GO:0050821: protein stabilization	2.09E-03
41	GO:0019827: stem cell population maintenance	2.09E-03
42	GO:0008610: lipid biosynthetic process	2.09E-03
43	GO:0009642: response to light intensity	2.09E-03
44	GO:0070413: trehalose metabolism in response to stress	2.09E-03
45	GO:0034599: cellular response to oxidative stress	2.23E-03
46	GO:0019430: removal of superoxide radicals	2.39E-03
47	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.39E-03
48	GO:0071482: cellular response to light stimulus	2.39E-03
49	GO:0090333: regulation of stomatal closure	2.70E-03
50	GO:0006783: heme biosynthetic process	2.70E-03
51	GO:0019432: triglyceride biosynthetic process	2.70E-03
52	GO:0010114: response to red light	2.74E-03
53	GO:0006810: transport	2.85E-03
54	GO:0080167: response to karrikin	2.96E-03
55	GO:0005982: starch metabolic process	3.02E-03
56	GO:0005975: carbohydrate metabolic process	3.02E-03
57	GO:0009638: phototropism	3.02E-03
58	GO:0006779: porphyrin-containing compound biosynthetic process	3.02E-03
59	GO:0006535: cysteine biosynthetic process from serine	3.36E-03
60	GO:0009641: shade avoidance	3.36E-03
61	GO:0006782: protoporphyrinogen IX biosynthetic process	3.36E-03
62	GO:0015979: photosynthesis	3.50E-03
63	GO:0043085: positive regulation of catalytic activity	3.71E-03
64	GO:0000038: very long-chain fatty acid metabolic process	3.71E-03
65	GO:0002213: defense response to insect	4.06E-03
66	GO:0006108: malate metabolic process	4.43E-03
67	GO:0006006: glucose metabolic process	4.43E-03
68	GO:0009767: photosynthetic electron transport chain	4.43E-03
69	GO:0010223: secondary shoot formation	4.81E-03
70	GO:0009266: response to temperature stimulus	4.81E-03
71	GO:0019253: reductive pentose-phosphate cycle	4.81E-03
72	GO:0019762: glucosinolate catabolic process	5.61E-03
73	GO:0005992: trehalose biosynthetic process	6.03E-03
74	GO:0019344: cysteine biosynthetic process	6.03E-03
75	GO:0009695: jasmonic acid biosynthetic process	6.45E-03
76	GO:0009768: photosynthesis, light harvesting in photosystem I	6.45E-03
77	GO:0016998: cell wall macromolecule catabolic process	6.89E-03
78	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.34E-03
79	GO:0030433: ubiquitin-dependent ERAD pathway	7.34E-03
80	GO:0019748: secondary metabolic process	7.34E-03
81	GO:0010017: red or far-red light signaling pathway	7.34E-03
82	GO:0035428: hexose transmembrane transport	7.34E-03
83	GO:0009306: protein secretion	8.26E-03
84	GO:0009735: response to cytokinin	8.97E-03
85	GO:0042631: cellular response to water deprivation	9.23E-03
86	GO:0006520: cellular amino acid metabolic process	9.73E-03
87	GO:0006662: glycerol ether metabolic process	9.73E-03
88	GO:0048868: pollen tube development	9.73E-03
89	GO:0046323: glucose import	9.73E-03
90	GO:0071472: cellular response to salt stress	9.73E-03
91	GO:0019252: starch biosynthetic process	1.08E-02
92	GO:0008654: phospholipid biosynthetic process	1.08E-02
93	GO:0009630: gravitropism	1.18E-02
94	GO:0042128: nitrate assimilation	1.58E-02
95	GO:0010411: xyloglucan metabolic process	1.64E-02
96	GO:0018298: protein-chromophore linkage	1.77E-02
97	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.79E-02
98	GO:0000160: phosphorelay signal transduction system	1.83E-02
99	GO:0010311: lateral root formation	1.83E-02
100	GO:0010218: response to far red light	1.89E-02
101	GO:0009637: response to blue light	2.09E-02
102	GO:0009853: photorespiration	2.09E-02
103	GO:0006099: tricarboxylic acid cycle	2.16E-02
104	GO:0006869: lipid transport	2.28E-02
105	GO:0042542: response to hydrogen peroxide	2.43E-02
106	GO:0032259: methylation	2.46E-02
107	GO:0016042: lipid catabolic process	2.49E-02
108	GO:0042546: cell wall biogenesis	2.57E-02
109	GO:0000209: protein polyubiquitination	2.57E-02
110	GO:0009644: response to high light intensity	2.65E-02
111	GO:0006855: drug transmembrane transport	2.79E-02
112	GO:0009736: cytokinin-activated signaling pathway	3.09E-02
113	GO:0006364: rRNA processing	3.09E-02
114	GO:0009585: red, far-red light phototransduction	3.09E-02
115	GO:0006857: oligopeptide transport	3.25E-02
116	GO:0042545: cell wall modification	3.89E-02
117	GO:0046686: response to cadmium ion	4.25E-02
118	GO:0009416: response to light stimulus	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
4	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0008465: glycerate dehydrogenase activity	0.00E+00
6	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
7	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
8	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
9	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
10	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
11	GO:0004332: fructose-bisphosphate aldolase activity	1.59E-07
12	GO:0004565: beta-galactosidase activity	5.86E-06
13	GO:0009011: starch synthase activity	1.12E-05
14	GO:0005344: oxygen transporter activity	1.14E-04
15	GO:0035671: enone reductase activity	1.14E-04
16	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.14E-04
17	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.14E-04
18	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.14E-04
19	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.14E-04
20	GO:0018708: thiol S-methyltransferase activity	2.65E-04
21	GO:0050017: L-3-cyanoalanine synthase activity	2.65E-04
22	GO:0008883: glutamyl-tRNA reductase activity	2.65E-04
23	GO:0042389: omega-3 fatty acid desaturase activity	2.65E-04
24	GO:0004512: inositol-3-phosphate synthase activity	2.65E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.65E-04
26	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.38E-04
27	GO:0004373: glycogen (starch) synthase activity	4.38E-04
28	GO:0050734: hydroxycinnamoyltransferase activity	4.38E-04
29	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.29E-04
30	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.35E-04
31	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.05E-03
32	GO:0009922: fatty acid elongase activity	1.05E-03
33	GO:0016615: malate dehydrogenase activity	1.29E-03
34	GO:2001070: starch binding	1.29E-03
35	GO:0004784: superoxide dismutase activity	1.29E-03
36	GO:0004124: cysteine synthase activity	1.54E-03
37	GO:0004126: cytidine deaminase activity	1.54E-03
38	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.54E-03
39	GO:0102391: decanoate--CoA ligase activity	1.54E-03
40	GO:0030060: L-malate dehydrogenase activity	1.54E-03
41	GO:0004467: long-chain fatty acid-CoA ligase activity	1.81E-03
42	GO:0005337: nucleoside transmembrane transporter activity	2.09E-03
43	GO:0016788: hydrolase activity, acting on ester bonds	2.31E-03
44	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.39E-03
45	GO:0050661: NADP binding	2.42E-03
46	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.02E-03
47	GO:0051287: NAD binding	3.30E-03
48	GO:0008047: enzyme activator activity	3.36E-03
49	GO:0008266: poly(U) RNA binding	4.81E-03
50	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.61E-03
51	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.61E-03
52	GO:0031409: pigment binding	5.61E-03
53	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.61E-03
54	GO:0022891: substrate-specific transmembrane transporter activity	7.79E-03
55	GO:0047134: protein-disulfide reductase activity	8.74E-03
56	GO:0016491: oxidoreductase activity	9.27E-03
57	GO:0005355: glucose transmembrane transporter activity	1.02E-02
58	GO:0004791: thioredoxin-disulfide reductase activity	1.02E-02
59	GO:0016853: isomerase activity	1.02E-02
60	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.13E-02
61	GO:0048038: quinone binding	1.13E-02
62	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.15E-02
63	GO:0000156: phosphorelay response regulator activity	1.24E-02
64	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.24E-02
65	GO:0016740: transferase activity	1.29E-02
66	GO:0016791: phosphatase activity	1.29E-02
67	GO:0008168: methyltransferase activity	1.34E-02
68	GO:0030246: carbohydrate binding	1.47E-02
69	GO:0016168: chlorophyll binding	1.52E-02
70	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.64E-02
71	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.70E-02
72	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.77E-02
73	GO:0052689: carboxylic ester hydrolase activity	1.92E-02
74	GO:0003746: translation elongation factor activity	2.09E-02
75	GO:0003993: acid phosphatase activity	2.16E-02
76	GO:0004185: serine-type carboxypeptidase activity	2.50E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	2.65E-02
78	GO:0031625: ubiquitin protein ligase binding	3.33E-02
79	GO:0045330: aspartyl esterase activity	3.33E-02
80	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.57E-02
81	GO:0030599: pectinesterase activity	3.81E-02
82	GO:0015035: protein disulfide oxidoreductase activity	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	5.95E-16
3	GO:0009534: chloroplast thylakoid	5.07E-13
4	GO:0009535: chloroplast thylakoid membrane	2.04E-08
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.50E-06
6	GO:0048046: apoplast	2.27E-06
7	GO:0009570: chloroplast stroma	3.06E-05
8	GO:0009941: chloroplast envelope	4.23E-05
9	GO:0010287: plastoglobule	8.77E-05
10	GO:0009579: thylakoid	9.99E-05
11	GO:0009515: granal stacked thylakoid	1.14E-04
12	GO:0009344: nitrite reductase complex [NAD(P)H]	1.14E-04
13	GO:0043036: starch grain	2.65E-04
14	GO:0009569: chloroplast starch grain	2.65E-04
15	GO:0009654: photosystem II oxygen evolving complex	4.22E-04
16	GO:0031969: chloroplast membrane	4.90E-04
17	GO:0019898: extrinsic component of membrane	8.60E-04
18	GO:0009543: chloroplast thylakoid lumen	8.76E-04
19	GO:0031977: thylakoid lumen	2.52E-03
20	GO:0030095: chloroplast photosystem II	4.81E-03
21	GO:0030076: light-harvesting complex	5.21E-03
22	GO:0043234: protein complex	5.61E-03
23	GO:0042651: thylakoid membrane	6.45E-03
24	GO:0005773: vacuole	8.96E-03
25	GO:0009522: photosystem I	1.02E-02
26	GO:0009523: photosystem II	1.08E-02
27	GO:0005777: peroxisome	1.20E-02
28	GO:0010319: stromule	1.35E-02
29	GO:0005618: cell wall	1.60E-02
30	GO:0009505: plant-type cell wall	3.25E-02
31	GO:0005623: cell	4.75E-02