Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G22360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009583: detection of light stimulus0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0071000: response to magnetism0.00E+00
4GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
5GO:1905177: tracheary element differentiation0.00E+00
6GO:2000469: negative regulation of peroxidase activity0.00E+00
7GO:0010081: regulation of inflorescence meristem growth0.00E+00
8GO:0090706: specification of plant organ position0.00E+00
9GO:0046620: regulation of organ growth2.06E-07
10GO:0009733: response to auxin3.72E-05
11GO:1900865: chloroplast RNA modification3.99E-05
12GO:0016556: mRNA modification5.22E-05
13GO:0010583: response to cyclopentenone6.74E-05
14GO:0009828: plant-type cell wall loosening8.58E-05
15GO:0080110: sporopollenin biosynthetic process1.43E-04
16GO:0045038: protein import into chloroplast thylakoid membrane1.43E-04
17GO:0030307: positive regulation of cell growth3.58E-04
18GO:1904966: positive regulation of vitamin E biosynthetic process3.92E-04
19GO:0043266: regulation of potassium ion transport3.92E-04
20GO:0010480: microsporocyte differentiation3.92E-04
21GO:0010080: regulation of floral meristem growth3.92E-04
22GO:0006659: phosphatidylserine biosynthetic process3.92E-04
23GO:1904964: positive regulation of phytol biosynthetic process3.92E-04
24GO:0072387: flavin adenine dinucleotide metabolic process3.92E-04
25GO:2000021: regulation of ion homeostasis3.92E-04
26GO:0051247: positive regulation of protein metabolic process3.92E-04
27GO:1902458: positive regulation of stomatal opening3.92E-04
28GO:0015904: tetracycline transport3.92E-04
29GO:2000905: negative regulation of starch metabolic process3.92E-04
30GO:0010450: inflorescence meristem growth3.92E-04
31GO:0000305: response to oxygen radical3.92E-04
32GO:0006419: alanyl-tRNA aminoacylation3.92E-04
33GO:0005975: carbohydrate metabolic process4.04E-04
34GO:0009926: auxin polar transport4.27E-04
35GO:0009646: response to absence of light5.39E-04
36GO:0008654: phospholipid biosynthetic process5.89E-04
37GO:0009664: plant-type cell wall organization6.09E-04
38GO:0009638: phototropism7.75E-04
39GO:0009416: response to light stimulus8.19E-04
40GO:0060359: response to ammonium ion8.49E-04
41GO:0048255: mRNA stabilization8.49E-04
42GO:1900871: chloroplast mRNA modification8.49E-04
43GO:0010617: circadian regulation of calcium ion oscillation8.49E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process8.49E-04
45GO:1901959: positive regulation of cutin biosynthetic process8.49E-04
46GO:0099402: plant organ development8.49E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process8.49E-04
48GO:0006568: tryptophan metabolic process8.49E-04
49GO:0010024: phytochromobilin biosynthetic process8.49E-04
50GO:0010343: singlet oxygen-mediated programmed cell death8.49E-04
51GO:1901529: positive regulation of anion channel activity8.49E-04
52GO:0009826: unidimensional cell growth1.13E-03
53GO:0010075: regulation of meristem growth1.34E-03
54GO:0048586: regulation of long-day photoperiodism, flowering1.38E-03
55GO:0006788: heme oxidation1.38E-03
56GO:0010022: meristem determinacy1.38E-03
57GO:0010623: programmed cell death involved in cell development1.38E-03
58GO:1901672: positive regulation of systemic acquired resistance1.38E-03
59GO:1904278: positive regulation of wax biosynthetic process1.38E-03
60GO:0090153: regulation of sphingolipid biosynthetic process1.38E-03
61GO:0043157: response to cation stress1.38E-03
62GO:0071398: cellular response to fatty acid1.38E-03
63GO:0005977: glycogen metabolic process1.38E-03
64GO:0045165: cell fate commitment1.38E-03
65GO:0033591: response to L-ascorbic acid1.38E-03
66GO:1902448: positive regulation of shade avoidance1.38E-03
67GO:0010207: photosystem II assembly1.51E-03
68GO:0009734: auxin-activated signaling pathway1.79E-03
69GO:0019048: modulation by virus of host morphology or physiology1.99E-03
70GO:1901332: negative regulation of lateral root development1.99E-03
71GO:0031048: chromatin silencing by small RNA1.99E-03
72GO:1990019: protein storage vacuole organization1.99E-03
73GO:2001141: regulation of RNA biosynthetic process1.99E-03
74GO:0090308: regulation of methylation-dependent chromatin silencing1.99E-03
75GO:0046836: glycolipid transport1.99E-03
76GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.99E-03
77GO:0010371: regulation of gibberellin biosynthetic process1.99E-03
78GO:0015979: photosynthesis2.22E-03
79GO:0007275: multicellular organism development2.33E-03
80GO:0040008: regulation of growth2.48E-03
81GO:0010431: seed maturation2.54E-03
82GO:0045723: positive regulation of fatty acid biosynthetic process2.67E-03
83GO:0006021: inositol biosynthetic process2.67E-03
84GO:0051567: histone H3-K9 methylation2.67E-03
85GO:0010508: positive regulation of autophagy2.67E-03
86GO:0008295: spermidine biosynthetic process2.67E-03
87GO:0006749: glutathione metabolic process2.67E-03
88GO:1902347: response to strigolactone2.67E-03
89GO:0010021: amylopectin biosynthetic process2.67E-03
90GO:0010109: regulation of photosynthesis2.67E-03
91GO:0006661: phosphatidylinositol biosynthetic process2.67E-03
92GO:0009765: photosynthesis, light harvesting2.67E-03
93GO:2000306: positive regulation of photomorphogenesis2.67E-03
94GO:0006109: regulation of carbohydrate metabolic process2.67E-03
95GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.04E-03
96GO:0019722: calcium-mediated signaling3.30E-03
97GO:0010584: pollen exine formation3.30E-03
98GO:0010117: photoprotection3.42E-03
99GO:0046283: anthocyanin-containing compound metabolic process3.42E-03
100GO:1902183: regulation of shoot apical meristem development3.42E-03
101GO:0016123: xanthophyll biosynthetic process3.42E-03
102GO:0010158: abaxial cell fate specification3.42E-03
103GO:0016554: cytidine to uridine editing4.23E-03
104GO:0060918: auxin transport4.23E-03
105GO:1901371: regulation of leaf morphogenesis4.23E-03
106GO:0000741: karyogamy4.23E-03
107GO:0016458: gene silencing4.23E-03
108GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione4.23E-03
109GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.23E-03
110GO:0009959: negative gravitropism4.23E-03
111GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.09E-03
112GO:0048280: vesicle fusion with Golgi apparatus5.09E-03
113GO:0010189: vitamin E biosynthetic process5.09E-03
114GO:0080086: stamen filament development5.09E-03
115GO:0010310: regulation of hydrogen peroxide metabolic process5.09E-03
116GO:0009658: chloroplast organization5.19E-03
117GO:0032502: developmental process5.51E-03
118GO:0048437: floral organ development6.02E-03
119GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.02E-03
120GO:0010444: guard mother cell differentiation6.02E-03
121GO:0006400: tRNA modification6.02E-03
122GO:0051510: regulation of unidimensional cell growth6.02E-03
123GO:0006955: immune response6.02E-03
124GO:0007267: cell-cell signaling6.64E-03
125GO:0009690: cytokinin metabolic process7.00E-03
126GO:0006605: protein targeting7.00E-03
127GO:2000070: regulation of response to water deprivation7.00E-03
128GO:0048564: photosystem I assembly7.00E-03
129GO:0010027: thylakoid membrane organization7.46E-03
130GO:0007186: G-protein coupled receptor signaling pathway8.03E-03
131GO:0009657: plastid organization8.03E-03
132GO:0010093: specification of floral organ identity8.03E-03
133GO:0071482: cellular response to light stimulus8.03E-03
134GO:0015996: chlorophyll catabolic process8.03E-03
135GO:0006810: transport8.78E-03
136GO:0006098: pentose-phosphate shunt9.12E-03
137GO:2000024: regulation of leaf development9.12E-03
138GO:0000373: Group II intron splicing9.12E-03
139GO:0009051: pentose-phosphate shunt, oxidative branch9.12E-03
140GO:0018298: protein-chromophore linkage9.76E-03
141GO:0031425: chloroplast RNA processing1.03E-02
142GO:1900426: positive regulation of defense response to bacterium1.03E-02
143GO:0009299: mRNA transcription1.14E-02
144GO:0006896: Golgi to vacuole transport1.14E-02
145GO:0030422: production of siRNA involved in RNA interference1.14E-02
146GO:0009641: shade avoidance1.14E-02
147GO:0006949: syncytium formation1.14E-02
148GO:0043085: positive regulation of catalytic activity1.27E-02
149GO:0009773: photosynthetic electron transport in photosystem I1.27E-02
150GO:0006352: DNA-templated transcription, initiation1.27E-02
151GO:0006415: translational termination1.27E-02
152GO:0048229: gametophyte development1.27E-02
153GO:0010216: maintenance of DNA methylation1.27E-02
154GO:0045037: protein import into chloroplast stroma1.40E-02
155GO:0010582: floral meristem determinacy1.40E-02
156GO:0006839: mitochondrial transport1.42E-02
157GO:0010588: cotyledon vascular tissue pattern formation1.53E-02
158GO:2000012: regulation of auxin polar transport1.53E-02
159GO:0010628: positive regulation of gene expression1.53E-02
160GO:0009785: blue light signaling pathway1.53E-02
161GO:0050826: response to freezing1.53E-02
162GO:0009718: anthocyanin-containing compound biosynthetic process1.53E-02
163GO:0009725: response to hormone1.53E-02
164GO:0006094: gluconeogenesis1.53E-02
165GO:0009933: meristem structural organization1.66E-02
166GO:0009887: animal organ morphogenesis1.66E-02
167GO:0009934: regulation of meristem structural organization1.66E-02
168GO:0009644: response to high light intensity1.73E-02
169GO:0010030: positive regulation of seed germination1.81E-02
170GO:0070588: calcium ion transmembrane transport1.81E-02
171GO:0006855: drug transmembrane transport1.87E-02
172GO:0006071: glycerol metabolic process1.95E-02
173GO:0019762: glucosinolate catabolic process1.95E-02
174GO:0009944: polarity specification of adaxial/abaxial axis2.10E-02
175GO:2000377: regulation of reactive oxygen species metabolic process2.10E-02
176GO:0019953: sexual reproduction2.25E-02
177GO:0009909: regulation of flower development2.40E-02
178GO:0006306: DNA methylation2.41E-02
179GO:0016998: cell wall macromolecule catabolic process2.41E-02
180GO:0006096: glycolytic process2.56E-02
181GO:0030245: cellulose catabolic process2.57E-02
182GO:0048316: seed development2.64E-02
183GO:0009693: ethylene biosynthetic process2.73E-02
184GO:0009740: gibberellic acid mediated signaling pathway2.90E-02
185GO:0010089: xylem development2.90E-02
186GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.92E-02
187GO:0042147: retrograde transport, endosome to Golgi3.07E-02
188GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.07E-02
189GO:0071555: cell wall organization3.18E-02
190GO:0080022: primary root development3.25E-02
191GO:0010087: phloem or xylem histogenesis3.25E-02
192GO:0010118: stomatal movement3.25E-02
193GO:0048653: anther development3.25E-02
194GO:0042631: cellular response to water deprivation3.25E-02
195GO:0009742: brassinosteroid mediated signaling pathway3.27E-02
196GO:0045489: pectin biosynthetic process3.42E-02
197GO:0010154: fruit development3.42E-02
198GO:0006662: glycerol ether metabolic process3.42E-02
199GO:0010305: leaf vascular tissue pattern formation3.42E-02
200GO:0010197: polar nucleus fusion3.42E-02
201GO:0010182: sugar mediated signaling pathway3.42E-02
202GO:0048868: pollen tube development3.42E-02
203GO:0006342: chromatin silencing3.42E-02
204GO:0048544: recognition of pollen3.61E-02
205GO:0042752: regulation of circadian rhythm3.61E-02
206GO:0006623: protein targeting to vacuole3.79E-02
207GO:0009791: post-embryonic development3.79E-02
208GO:0019252: starch biosynthetic process3.79E-02
209GO:0006891: intra-Golgi vesicle-mediated transport3.98E-02
210GO:0016032: viral process4.17E-02
211GO:0009630: gravitropism4.17E-02
212GO:0010090: trichome morphogenesis4.36E-02
213GO:1901657: glycosyl compound metabolic process4.36E-02
214GO:0006629: lipid metabolic process4.53E-02
215GO:0006464: cellular protein modification process4.56E-02
216GO:0010252: auxin homeostasis4.56E-02
217GO:0051607: defense response to virus4.96E-02
RankGO TermAdjusted P value
1GO:0010276: phytol kinase activity0.00E+00
2GO:0004462: lactoylglutathione lyase activity2.05E-04
3GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity3.92E-04
4GO:0004813: alanine-tRNA ligase activity3.92E-04
5GO:0008158: hedgehog receptor activity3.92E-04
6GO:0005080: protein kinase C binding3.92E-04
7GO:0050139: nicotinate-N-glucosyltransferase activity3.92E-04
8GO:0004425: indole-3-glycerol-phosphate synthase activity3.92E-04
9GO:0042834: peptidoglycan binding3.92E-04
10GO:0019156: isoamylase activity8.49E-04
11GO:0008493: tetracycline transporter activity8.49E-04
12GO:0004512: inositol-3-phosphate synthase activity8.49E-04
13GO:0048531: beta-1,3-galactosyltransferase activity8.49E-04
14GO:0017118: lipoyltransferase activity8.49E-04
15GO:0004362: glutathione-disulfide reductase activity8.49E-04
16GO:0043425: bHLH transcription factor binding8.49E-04
17GO:0004766: spermidine synthase activity8.49E-04
18GO:0000976: transcription regulatory region sequence-specific DNA binding1.19E-03
19GO:0015462: ATPase-coupled protein transmembrane transporter activity1.38E-03
20GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.51E-03
21GO:0016149: translation release factor activity, codon specific1.99E-03
22GO:0035197: siRNA binding1.99E-03
23GO:0009882: blue light photoreceptor activity1.99E-03
24GO:0017057: 6-phosphogluconolactonase activity1.99E-03
25GO:0017089: glycolipid transporter activity1.99E-03
26GO:0005345: purine nucleobase transmembrane transporter activity2.31E-03
27GO:0004871: signal transducer activity2.62E-03
28GO:0043495: protein anchor2.67E-03
29GO:0004392: heme oxygenase (decyclizing) activity2.67E-03
30GO:0001053: plastid sigma factor activity2.67E-03
31GO:0051861: glycolipid binding2.67E-03
32GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.67E-03
33GO:0016987: sigma factor activity2.67E-03
34GO:0016773: phosphotransferase activity, alcohol group as acceptor3.42E-03
35GO:0004519: endonuclease activity4.05E-03
36GO:0004556: alpha-amylase activity4.23E-03
37GO:0008200: ion channel inhibitor activity4.23E-03
38GO:0004605: phosphatidate cytidylyltransferase activity4.23E-03
39GO:0004332: fructose-bisphosphate aldolase activity4.23E-03
40GO:0050662: coenzyme binding4.49E-03
41GO:0005215: transporter activity4.77E-03
42GO:0008195: phosphatidate phosphatase activity5.09E-03
43GO:0019899: enzyme binding6.02E-03
44GO:0016597: amino acid binding7.05E-03
45GO:0008889: glycerophosphodiester phosphodiesterase activity9.12E-03
46GO:0071949: FAD binding9.12E-03
47GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity9.12E-03
48GO:0003747: translation release factor activity9.12E-03
49GO:0015238: drug transmembrane transporter activity1.03E-02
50GO:0030955: potassium ion binding1.03E-02
51GO:0004743: pyruvate kinase activity1.03E-02
52GO:0004222: metalloendopeptidase activity1.08E-02
53GO:0030234: enzyme regulator activity1.14E-02
54GO:0008047: enzyme activator activity1.14E-02
55GO:0015020: glucuronosyltransferase activity1.14E-02
56GO:0003993: acid phosphatase activity1.30E-02
57GO:0000049: tRNA binding1.40E-02
58GO:0004521: endoribonuclease activity1.40E-02
59GO:0008081: phosphoric diester hydrolase activity1.53E-02
60GO:0005262: calcium channel activity1.53E-02
61GO:0042802: identical protein binding1.67E-02
62GO:0008146: sulfotransferase activity1.81E-02
63GO:0031418: L-ascorbic acid binding2.10E-02
64GO:0004857: enzyme inhibitor activity2.10E-02
65GO:0005528: FK506 binding2.10E-02
66GO:0033612: receptor serine/threonine kinase binding2.41E-02
67GO:0030570: pectate lyase activity2.73E-02
68GO:0008810: cellulase activity2.73E-02
69GO:0022891: substrate-specific transmembrane transporter activity2.73E-02
70GO:0008514: organic anion transmembrane transporter activity2.90E-02
71GO:0047134: protein-disulfide reductase activity3.07E-02
72GO:0005199: structural constituent of cell wall3.42E-02
73GO:0004791: thioredoxin-disulfide reductase activity3.61E-02
74GO:0003824: catalytic activity3.70E-02
75GO:0048038: quinone binding3.98E-02
76GO:0016829: lyase activity4.17E-02
77GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.36E-02
78GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.56E-02
79GO:0016759: cellulose synthase activity4.56E-02
80GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.94E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast5.53E-06
3GO:0031225: anchored component of membrane6.72E-04
4GO:0080085: signal recognition particle, chloroplast targeting8.49E-04
5GO:0046658: anchored component of plasma membrane9.17E-04
6GO:0005886: plasma membrane1.16E-03
7GO:0009535: chloroplast thylakoid membrane1.21E-03
8GO:0019897: extrinsic component of plasma membrane1.38E-03
9GO:0016605: PML body1.38E-03
10GO:0009528: plastid inner membrane1.38E-03
11GO:0005719: nuclear euchromatin1.99E-03
12GO:0009570: chloroplast stroma1.99E-03
13GO:0009654: photosystem II oxygen evolving complex2.31E-03
14GO:0009527: plastid outer membrane2.67E-03
15GO:0019898: extrinsic component of membrane4.81E-03
16GO:0010319: stromule6.64E-03
17GO:0012507: ER to Golgi transport vesicle membrane7.00E-03
18GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.03E-03
19GO:0009543: chloroplast thylakoid lumen8.15E-03
20GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.12E-03
21GO:0005720: nuclear heterochromatin9.12E-03
22GO:0016604: nuclear body1.03E-02
23GO:0015030: Cajal body1.03E-02
24GO:0005578: proteinaceous extracellular matrix1.53E-02
25GO:0030095: chloroplast photosystem II1.66E-02
26GO:0009505: plant-type cell wall1.74E-02
27GO:0042651: thylakoid membrane2.25E-02
28GO:0009532: plastid stroma2.41E-02
29GO:0031969: chloroplast membrane2.80E-02
30GO:0009523: photosystem II3.79E-02
31GO:0005743: mitochondrial inner membrane4.15E-02
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Gene type



Gene DE type