co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
5	GO:0046486: glycerolipid metabolic process	0.00E+00
6	GO:0006907: pinocytosis	0.00E+00
7	GO:0070125: mitochondrial translational elongation	0.00E+00
8	GO:0045014: negative regulation of transcription by glucose	0.00E+00
9	GO:0000819: sister chromatid segregation	0.00E+00
10	GO:0009733: response to auxin	1.02E-06
11	GO:0009734: auxin-activated signaling pathway	1.06E-05
12	GO:0043039: tRNA aminoacylation	2.83E-05
13	GO:0046620: regulation of organ growth	9.04E-05
14	GO:0009686: gibberellin biosynthetic process	1.69E-04
15	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.69E-04
16	GO:0048497: maintenance of floral organ identity	4.59E-04
17	GO:0006351: transcription, DNA-templated	4.84E-04
18	GO:0009926: auxin polar transport	4.85E-04
19	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	8.23E-04
20	GO:0046520: sphingoid biosynthetic process	8.23E-04
21	GO:0032958: inositol phosphate biosynthetic process	8.23E-04
22	GO:0015904: tetracycline transport	8.23E-04
23	GO:0051013: microtubule severing	8.23E-04
24	GO:0034757: negative regulation of iron ion transport	8.23E-04
25	GO:0006434: seryl-tRNA aminoacylation	8.23E-04
26	GO:0010726: positive regulation of hydrogen peroxide metabolic process	8.23E-04
27	GO:0006438: valyl-tRNA aminoacylation	8.23E-04
28	GO:0009736: cytokinin-activated signaling pathway	8.31E-04
29	GO:0000160: phosphorelay signal transduction system	1.20E-03
30	GO:0009416: response to light stimulus	1.24E-03
31	GO:0007186: G-protein coupled receptor signaling pathway	1.62E-03
32	GO:0061062: regulation of nematode larval development	1.78E-03
33	GO:0010271: regulation of chlorophyll catabolic process	1.78E-03
34	GO:0006423: cysteinyl-tRNA aminoacylation	1.78E-03
35	GO:0006650: glycerophospholipid metabolic process	1.78E-03
36	GO:0001736: establishment of planar polarity	1.78E-03
37	GO:0080009: mRNA methylation	1.78E-03
38	GO:0009786: regulation of asymmetric cell division	1.78E-03
39	GO:0031648: protein destabilization	1.78E-03
40	GO:2000123: positive regulation of stomatal complex development	1.78E-03
41	GO:0010024: phytochromobilin biosynthetic process	1.78E-03
42	GO:0009658: chloroplast organization	2.59E-03
43	GO:0006782: protoporphyrinogen IX biosynthetic process	2.71E-03
44	GO:0048829: root cap development	2.71E-03
45	GO:0010583: response to cyclopentenone	2.88E-03
46	GO:0071398: cellular response to fatty acid	2.95E-03
47	GO:0006065: UDP-glucuronate biosynthetic process	2.95E-03
48	GO:0048575: short-day photoperiodism, flowering	2.95E-03
49	GO:0045910: negative regulation of DNA recombination	2.95E-03
50	GO:0090506: axillary shoot meristem initiation	2.95E-03
51	GO:1902448: positive regulation of shade avoidance	2.95E-03
52	GO:0080117: secondary growth	2.95E-03
53	GO:0046168: glycerol-3-phosphate catabolic process	2.95E-03
54	GO:0010226: response to lithium ion	2.95E-03
55	GO:0040008: regulation of growth	3.78E-03
56	GO:0010321: regulation of vegetative phase change	4.30E-03
57	GO:0045017: glycerolipid biosynthetic process	4.30E-03
58	GO:0010371: regulation of gibberellin biosynthetic process	4.30E-03
59	GO:0006020: inositol metabolic process	4.30E-03
60	GO:0051513: regulation of monopolar cell growth	4.30E-03
61	GO:0051639: actin filament network formation	4.30E-03
62	GO:0034059: response to anoxia	4.30E-03
63	GO:0007276: gamete generation	4.30E-03
64	GO:0006072: glycerol-3-phosphate metabolic process	4.30E-03
65	GO:0006424: glutamyl-tRNA aminoacylation	4.30E-03
66	GO:0009887: animal organ morphogenesis	4.64E-03
67	GO:0006355: regulation of transcription, DNA-templated	4.72E-03
68	GO:0009825: multidimensional cell growth	5.21E-03
69	GO:0042991: transcription factor import into nucleus	5.82E-03
70	GO:0006021: inositol biosynthetic process	5.82E-03
71	GO:0009956: radial pattern formation	5.82E-03
72	GO:0009755: hormone-mediated signaling pathway	5.82E-03
73	GO:0048629: trichome patterning	5.82E-03
74	GO:0051764: actin crosslink formation	5.82E-03
75	GO:0009765: photosynthesis, light harvesting	5.82E-03
76	GO:2000038: regulation of stomatal complex development	5.82E-03
77	GO:0010311: lateral root formation	6.41E-03
78	GO:0051017: actin filament bundle assembly	6.47E-03
79	GO:0016567: protein ubiquitination	6.80E-03
80	GO:0006418: tRNA aminoacylation for protein translation	7.15E-03
81	GO:0009696: salicylic acid metabolic process	7.49E-03
82	GO:0016120: carotene biosynthetic process	7.49E-03
83	GO:0045487: gibberellin catabolic process	7.49E-03
84	GO:0009107: lipoate biosynthetic process	7.49E-03
85	GO:0016123: xanthophyll biosynthetic process	7.49E-03
86	GO:0010438: cellular response to sulfur starvation	7.49E-03
87	GO:0010375: stomatal complex patterning	7.49E-03
88	GO:0071555: cell wall organization	7.62E-03
89	GO:0007005: mitochondrion organization	8.63E-03
90	GO:0003006: developmental process involved in reproduction	9.32E-03
91	GO:0010942: positive regulation of cell death	9.32E-03
92	GO:0010358: leaf shaping	9.32E-03
93	GO:0009913: epidermal cell differentiation	9.32E-03
94	GO:0016554: cytidine to uridine editing	9.32E-03
95	GO:1902456: regulation of stomatal opening	9.32E-03
96	GO:0048831: regulation of shoot system development	9.32E-03
97	GO:0071215: cellular response to abscisic acid stimulus	9.44E-03
98	GO:0030001: metal ion transport	9.65E-03
99	GO:0042127: regulation of cell proliferation	1.03E-02
100	GO:0010091: trichome branching	1.03E-02
101	GO:0006694: steroid biosynthetic process	1.13E-02
102	GO:0048509: regulation of meristem development	1.13E-02
103	GO:0030488: tRNA methylation	1.13E-02
104	GO:0031930: mitochondria-nucleus signaling pathway	1.13E-02
105	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.13E-02
106	GO:0010019: chloroplast-nucleus signaling pathway	1.13E-02
107	GO:0010087: phloem or xylem histogenesis	1.21E-02
108	GO:0010305: leaf vascular tissue pattern formation	1.30E-02
109	GO:0009741: response to brassinosteroid	1.30E-02
110	GO:0009958: positive gravitropism	1.30E-02
111	GO:0010444: guard mother cell differentiation	1.34E-02
112	GO:0000082: G1/S transition of mitotic cell cycle	1.34E-02
113	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.34E-02
114	GO:0000712: resolution of meiotic recombination intermediates	1.34E-02
115	GO:1900056: negative regulation of leaf senescence	1.34E-02
116	GO:0030497: fatty acid elongation	1.34E-02
117	GO:0010098: suspensor development	1.34E-02
118	GO:0009664: plant-type cell wall organization	1.51E-02
119	GO:0048825: cotyledon development	1.51E-02
120	GO:0009704: de-etiolation	1.56E-02
121	GO:2000070: regulation of response to water deprivation	1.56E-02
122	GO:0010492: maintenance of shoot apical meristem identity	1.56E-02
123	GO:0000105: histidine biosynthetic process	1.56E-02
124	GO:0006402: mRNA catabolic process	1.56E-02
125	GO:0010439: regulation of glucosinolate biosynthetic process	1.56E-02
126	GO:0009819: drought recovery	1.56E-02
127	GO:0071554: cell wall organization or biogenesis	1.62E-02
128	GO:0009739: response to gibberellin	1.77E-02
129	GO:0048574: long-day photoperiodism, flowering	1.80E-02
130	GO:0032544: plastid translation	1.80E-02
131	GO:0009909: regulation of flower development	1.89E-02
132	GO:0009828: plant-type cell wall loosening	1.96E-02
133	GO:0006468: protein phosphorylation	1.96E-02
134	GO:0046916: cellular transition metal ion homeostasis	2.05E-02
135	GO:0048507: meristem development	2.05E-02
136	GO:0000373: Group II intron splicing	2.05E-02
137	GO:0048589: developmental growth	2.05E-02
138	GO:0009056: catabolic process	2.05E-02
139	GO:0051865: protein autoubiquitination	2.05E-02
140	GO:0009638: phototropism	2.31E-02
141	GO:0006779: porphyrin-containing compound biosynthetic process	2.31E-02
142	GO:0042761: very long-chain fatty acid biosynthetic process	2.31E-02
143	GO:1900865: chloroplast RNA modification	2.31E-02
144	GO:0016042: lipid catabolic process	2.39E-02
145	GO:0009740: gibberellic acid mediated signaling pathway	2.40E-02
146	GO:0009641: shade avoidance	2.58E-02
147	GO:0006298: mismatch repair	2.58E-02
148	GO:0006949: syncytium formation	2.58E-02
149	GO:0006259: DNA metabolic process	2.58E-02
150	GO:0009627: systemic acquired resistance	2.62E-02
151	GO:0009826: unidimensional cell growth	2.72E-02
152	GO:0048573: photoperiodism, flowering	2.77E-02
153	GO:0015995: chlorophyll biosynthetic process	2.77E-02
154	GO:0051726: regulation of cell cycle	2.79E-02
155	GO:0008285: negative regulation of cell proliferation	2.86E-02
156	GO:0009750: response to fructose	2.86E-02
157	GO:0048765: root hair cell differentiation	2.86E-02
158	GO:0006265: DNA topological change	2.86E-02
159	GO:0009682: induced systemic resistance	2.86E-02
160	GO:0048481: plant ovule development	3.07E-02
161	GO:0009817: defense response to fungus, incompatible interaction	3.07E-02
162	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.15E-02
163	GO:0045037: protein import into chloroplast stroma	3.15E-02
164	GO:0010582: floral meristem determinacy	3.15E-02
165	GO:0006790: sulfur compound metabolic process	3.15E-02
166	GO:0006312: mitotic recombination	3.15E-02
167	GO:0012501: programmed cell death	3.15E-02
168	GO:0005983: starch catabolic process	3.15E-02
169	GO:0010152: pollen maturation	3.15E-02
170	GO:0006811: ion transport	3.38E-02
171	GO:0010102: lateral root morphogenesis	3.45E-02
172	GO:0010628: positive regulation of gene expression	3.45E-02
173	GO:0009785: blue light signaling pathway	3.45E-02
174	GO:0009691: cytokinin biosynthetic process	3.45E-02
175	GO:2000028: regulation of photoperiodism, flowering	3.45E-02
176	GO:0010588: cotyledon vascular tissue pattern formation	3.45E-02
177	GO:0048366: leaf development	3.65E-02
178	GO:0006865: amino acid transport	3.71E-02
179	GO:0009933: meristem structural organization	3.76E-02
180	GO:0010223: secondary shoot formation	3.76E-02
181	GO:0010540: basipetal auxin transport	3.76E-02
182	GO:0006302: double-strand break repair	3.76E-02
183	GO:0048467: gynoecium development	3.76E-02
184	GO:0010207: photosystem II assembly	3.76E-02
185	GO:0007034: vacuolar transport	3.76E-02
186	GO:0010020: chloroplast fission	3.76E-02
187	GO:0009867: jasmonic acid mediated signaling pathway	3.88E-02
188	GO:0090351: seedling development	4.07E-02
189	GO:0046854: phosphatidylinositol phosphorylation	4.07E-02
190	GO:0009790: embryo development	4.15E-02
191	GO:0006636: unsaturated fatty acid biosynthetic process	4.40E-02
192	GO:0006863: purine nucleobase transport	4.40E-02
193	GO:0010025: wax biosynthetic process	4.40E-02
194	GO:0007165: signal transduction	4.46E-02
195	GO:0005975: carbohydrate metabolic process	4.57E-02
196	GO:0005992: trehalose biosynthetic process	4.74E-02
197	GO:0009744: response to sucrose	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
5	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
8	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
9	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
10	GO:0071633: dihydroceramidase activity	0.00E+00
11	GO:0001872: (1->3)-beta-D-glucan binding	1.85E-04
12	GO:0010011: auxin binding	3.08E-04
13	GO:0004871: signal transducer activity	6.00E-04
14	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.73E-04
15	GO:0052381: tRNA dimethylallyltransferase activity	8.23E-04
16	GO:0004832: valine-tRNA ligase activity	8.23E-04
17	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	8.23E-04
18	GO:0010347: L-galactose-1-phosphate phosphatase activity	8.23E-04
19	GO:0010012: steroid 22-alpha hydroxylase activity	8.23E-04
20	GO:0000170: sphingosine hydroxylase activity	8.23E-04
21	GO:0000829: inositol heptakisphosphate kinase activity	8.23E-04
22	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	8.23E-04
23	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	8.23E-04
24	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	8.23E-04
25	GO:0005227: calcium activated cation channel activity	8.23E-04
26	GO:0004828: serine-tRNA ligase activity	8.23E-04
27	GO:0004818: glutamate-tRNA ligase activity	8.23E-04
28	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	8.23E-04
29	GO:0008568: microtubule-severing ATPase activity	8.23E-04
30	GO:0000828: inositol hexakisphosphate kinase activity	8.23E-04
31	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.78E-03
32	GO:0009884: cytokinin receptor activity	1.78E-03
33	GO:0017118: lipoyltransferase activity	1.78E-03
34	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.78E-03
35	GO:0010296: prenylcysteine methylesterase activity	1.78E-03
36	GO:0016415: octanoyltransferase activity	1.78E-03
37	GO:0052832: inositol monophosphate 3-phosphatase activity	1.78E-03
38	GO:0004817: cysteine-tRNA ligase activity	1.78E-03
39	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.78E-03
40	GO:0004109: coproporphyrinogen oxidase activity	1.78E-03
41	GO:0008805: carbon-monoxide oxygenase activity	1.78E-03
42	GO:0042284: sphingolipid delta-4 desaturase activity	1.78E-03
43	GO:0008934: inositol monophosphate 1-phosphatase activity	1.78E-03
44	GO:0008493: tetracycline transporter activity	1.78E-03
45	GO:0019156: isoamylase activity	1.78E-03
46	GO:0052833: inositol monophosphate 4-phosphatase activity	1.78E-03
47	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.02E-03
48	GO:0005034: osmosensor activity	2.95E-03
49	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	2.95E-03
50	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.95E-03
51	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.95E-03
52	GO:0000156: phosphorelay response regulator activity	3.13E-03
53	GO:0051015: actin filament binding	3.13E-03
54	GO:0003916: DNA topoisomerase activity	4.30E-03
55	GO:0080031: methyl salicylate esterase activity	4.30E-03
56	GO:0045544: gibberellin 20-oxidase activity	4.30E-03
57	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	4.30E-03
58	GO:0019199: transmembrane receptor protein kinase activity	5.82E-03
59	GO:0004930: G-protein coupled receptor activity	5.82E-03
60	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.82E-03
61	GO:0010328: auxin influx transmembrane transporter activity	5.82E-03
62	GO:0005471: ATP:ADP antiporter activity	7.49E-03
63	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	7.49E-03
64	GO:0008725: DNA-3-methyladenine glycosylase activity	7.49E-03
65	GO:0004674: protein serine/threonine kinase activity	7.97E-03
66	GO:0016788: hydrolase activity, acting on ester bonds	9.15E-03
67	GO:0004556: alpha-amylase activity	9.32E-03
68	GO:0030983: mismatched DNA binding	9.32E-03
69	GO:0080030: methyl indole-3-acetate esterase activity	9.32E-03
70	GO:0004709: MAP kinase kinase kinase activity	9.32E-03
71	GO:0030570: pectate lyase activity	9.44E-03
72	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.12E-02
73	GO:0004812: aminoacyl-tRNA ligase activity	1.12E-02
74	GO:0019900: kinase binding	1.13E-02
75	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.13E-02
76	GO:0051753: mannan synthase activity	1.13E-02
77	GO:0016832: aldehyde-lyase activity	1.13E-02
78	GO:0043621: protein self-association	1.25E-02
79	GO:0001085: RNA polymerase II transcription factor binding	1.30E-02
80	GO:0016853: isomerase activity	1.40E-02
81	GO:0052689: carboxylic ester hydrolase activity	1.53E-02
82	GO:0003677: DNA binding	1.69E-02
83	GO:0043565: sequence-specific DNA binding	1.75E-02
84	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.76E-02
85	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.80E-02
86	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.80E-02
87	GO:0046914: transition metal ion binding	1.80E-02
88	GO:0003777: microtubule motor activity	1.89E-02
89	GO:0042803: protein homodimerization activity	1.91E-02
90	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.05E-02
91	GO:0004722: protein serine/threonine phosphatase activity	2.06E-02
92	GO:0016413: O-acetyltransferase activity	2.22E-02
93	GO:0004673: protein histidine kinase activity	2.58E-02
94	GO:0005515: protein binding	2.58E-02
95	GO:0004805: trehalose-phosphatase activity	2.58E-02
96	GO:0030247: polysaccharide binding	2.77E-02
97	GO:0009055: electron carrier activity	2.83E-02
98	GO:0004519: endonuclease activity	2.89E-02
99	GO:0000049: tRNA binding	3.15E-02
100	GO:0005096: GTPase activator activity	3.22E-02
101	GO:0000155: phosphorelay sensor kinase activity	3.45E-02
102	GO:0003725: double-stranded RNA binding	3.45E-02
103	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.55E-02
104	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.55E-02
105	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.76E-02
106	GO:0008146: sulfotransferase activity	4.07E-02
107	GO:0004970: ionotropic glutamate receptor activity	4.07E-02
108	GO:0005217: intracellular ligand-gated ion channel activity	4.07E-02
109	GO:0004190: aspartic-type endopeptidase activity	4.07E-02
110	GO:0008061: chitin binding	4.07E-02
111	GO:0003712: transcription cofactor activity	4.07E-02
112	GO:0004672: protein kinase activity	4.27E-02
113	GO:0005524: ATP binding	4.62E-02
114	GO:0051536: iron-sulfur cluster binding	4.74E-02
115	GO:0031418: L-ascorbic acid binding	4.74E-02
116	GO:0008134: transcription factor binding	4.74E-02
117	GO:0046872: metal ion binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0000791: euchromatin	8.23E-04
4	GO:0009986: cell surface	1.07E-03
5	GO:0030870: Mre11 complex	1.78E-03
6	GO:0009569: chloroplast starch grain	1.78E-03
7	GO:0031357: integral component of chloroplast inner membrane	1.78E-03
8	GO:0030139: endocytic vesicle	2.95E-03
9	GO:0005884: actin filament	3.14E-03
10	GO:0009331: glycerol-3-phosphate dehydrogenase complex	4.30E-03
11	GO:0009531: secondary cell wall	4.30E-03
12	GO:0032585: multivesicular body membrane	4.30E-03
13	GO:0032432: actin filament bundle	4.30E-03
14	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	5.82E-03
15	GO:0046658: anchored component of plasma membrane	6.73E-03
16	GO:0000795: synaptonemal complex	7.49E-03
17	GO:0005886: plasma membrane	9.27E-03
18	GO:0000793: condensed chromosome	9.32E-03
19	GO:0015629: actin cytoskeleton	9.44E-03
20	GO:0000815: ESCRT III complex	1.13E-02
21	GO:0009536: plastid	1.27E-02
22	GO:0000794: condensed nuclear chromosome	1.34E-02
23	GO:0031225: anchored component of membrane	2.49E-02
24	GO:0005667: transcription factor complex	2.62E-02
25	GO:0005578: proteinaceous extracellular matrix	3.45E-02
26	GO:0005874: microtubule	3.75E-02
27	GO:0030095: chloroplast photosystem II	3.76E-02
28	GO:0005875: microtubule associated complex	4.40E-02
29	GO:0009941: chloroplast envelope	4.75E-02