co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:1905157: positive regulation of photosynthesis	0.00E+00
5	GO:0097275: cellular ammonia homeostasis	0.00E+00
6	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0051924: regulation of calcium ion transport	0.00E+00
9	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.42E-05
11	GO:0015995: chlorophyll biosynthetic process	4.94E-05
12	GO:1901259: chloroplast rRNA processing	1.41E-04
13	GO:0009955: adaxial/abaxial pattern specification	1.41E-04
14	GO:0006353: DNA-templated transcription, termination	2.35E-04
15	GO:0000476: maturation of 4.5S rRNA	2.53E-04
16	GO:0000967: rRNA 5'-end processing	2.53E-04
17	GO:1905039: carboxylic acid transmembrane transport	2.53E-04
18	GO:1905200: gibberellic acid transmembrane transport	2.53E-04
19	GO:0043686: co-translational protein modification	2.53E-04
20	GO:0043007: maintenance of rDNA	2.53E-04
21	GO:0034337: RNA folding	2.53E-04
22	GO:0080112: seed growth	2.53E-04
23	GO:0009657: plastid organization	2.90E-04
24	GO:0032544: plastid translation	2.90E-04
25	GO:0006898: receptor-mediated endocytosis	5.59E-04
26	GO:0018026: peptidyl-lysine monomethylation	5.59E-04
27	GO:0034470: ncRNA processing	5.59E-04
28	GO:0009773: photosynthetic electron transport in photosystem I	5.62E-04
29	GO:0015979: photosynthesis	7.16E-04
30	GO:0006696: ergosterol biosynthetic process	9.07E-04
31	GO:0010114: response to red light	1.18E-03
32	GO:0006418: tRNA aminoacylation for protein translation	1.23E-03
33	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.29E-03
34	GO:0010731: protein glutathionylation	1.29E-03
35	GO:0006168: adenine salvage	1.29E-03
36	GO:1902358: sulfate transmembrane transport	1.29E-03
37	GO:0045338: farnesyl diphosphate metabolic process	1.29E-03
38	GO:0006166: purine ribonucleoside salvage	1.29E-03
39	GO:0006020: inositol metabolic process	1.29E-03
40	GO:0009152: purine ribonucleotide biosynthetic process	1.29E-03
41	GO:0010601: positive regulation of auxin biosynthetic process	1.29E-03
42	GO:0046653: tetrahydrofolate metabolic process	1.29E-03
43	GO:0010107: potassium ion import	1.73E-03
44	GO:0006021: inositol biosynthetic process	1.73E-03
45	GO:0071483: cellular response to blue light	1.73E-03
46	GO:0009765: photosynthesis, light harvesting	1.73E-03
47	GO:0022622: root system development	1.73E-03
48	GO:0009958: positive gravitropism	2.21E-03
49	GO:0006656: phosphatidylcholine biosynthetic process	2.21E-03
50	GO:0032543: mitochondrial translation	2.21E-03
51	GO:0098719: sodium ion import across plasma membrane	2.21E-03
52	GO:0006564: L-serine biosynthetic process	2.21E-03
53	GO:0009904: chloroplast accumulation movement	2.21E-03
54	GO:0031365: N-terminal protein amino acid modification	2.21E-03
55	GO:0044209: AMP salvage	2.21E-03
56	GO:0000741: karyogamy	2.72E-03
57	GO:0046855: inositol phosphate dephosphorylation	2.72E-03
58	GO:1902456: regulation of stomatal opening	2.72E-03
59	GO:0010190: cytochrome b6f complex assembly	2.72E-03
60	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.72E-03
61	GO:0009643: photosynthetic acclimation	2.72E-03
62	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.72E-03
63	GO:0032502: developmental process	2.90E-03
64	GO:0048280: vesicle fusion with Golgi apparatus	3.27E-03
65	GO:0009903: chloroplast avoidance movement	3.27E-03
66	GO:0008272: sulfate transport	3.86E-03
67	GO:0009769: photosynthesis, light harvesting in photosystem II	3.86E-03
68	GO:0009645: response to low light intensity stimulus	3.86E-03
69	GO:0032880: regulation of protein localization	3.86E-03
70	GO:0048437: floral organ development	3.86E-03
71	GO:0010196: nonphotochemical quenching	3.86E-03
72	GO:0016126: sterol biosynthetic process	3.92E-03
73	GO:0042255: ribosome assembly	4.48E-03
74	GO:0010078: maintenance of root meristem identity	4.48E-03
75	GO:0055075: potassium ion homeostasis	4.48E-03
76	GO:0052543: callose deposition in cell wall	4.48E-03
77	GO:0043562: cellular response to nitrogen levels	5.13E-03
78	GO:0015996: chlorophyll catabolic process	5.13E-03
79	GO:0009813: flavonoid biosynthetic process	5.37E-03
80	GO:0009821: alkaloid biosynthetic process	5.81E-03
81	GO:0090333: regulation of stomatal closure	5.81E-03
82	GO:0006783: heme biosynthetic process	5.81E-03
83	GO:0046685: response to arsenic-containing substance	5.81E-03
84	GO:0048527: lateral root development	5.91E-03
85	GO:0051453: regulation of intracellular pH	6.52E-03
86	GO:0005982: starch metabolic process	6.52E-03
87	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	6.52E-03
88	GO:0006782: protoporphyrinogen IX biosynthetic process	7.26E-03
89	GO:0045036: protein targeting to chloroplast	7.26E-03
90	GO:0009641: shade avoidance	7.26E-03
91	GO:0006896: Golgi to vacuole transport	7.26E-03
92	GO:0015770: sucrose transport	8.04E-03
93	GO:0006415: translational termination	8.04E-03
94	GO:0009684: indoleacetic acid biosynthetic process	8.04E-03
95	GO:0016024: CDP-diacylglycerol biosynthetic process	8.83E-03
96	GO:0006790: sulfur compound metabolic process	8.83E-03
97	GO:0009658: chloroplast organization	9.41E-03
98	GO:0010588: cotyledon vascular tissue pattern formation	9.66E-03
99	GO:2000012: regulation of auxin polar transport	9.66E-03
100	GO:0010207: photosystem II assembly	1.05E-02
101	GO:0007015: actin filament organization	1.05E-02
102	GO:0010223: secondary shoot formation	1.05E-02
103	GO:0048467: gynoecium development	1.05E-02
104	GO:0010143: cutin biosynthetic process	1.05E-02
105	GO:0006364: rRNA processing	1.13E-02
106	GO:0019853: L-ascorbic acid biosynthetic process	1.14E-02
107	GO:0046854: phosphatidylinositol phosphorylation	1.14E-02
108	GO:0009901: anther dehiscence	1.14E-02
109	GO:0080147: root hair cell development	1.32E-02
110	GO:0048367: shoot system development	1.38E-02
111	GO:0009768: photosynthesis, light harvesting in photosystem I	1.42E-02
112	GO:0019915: lipid storage	1.52E-02
113	GO:0061077: chaperone-mediated protein folding	1.52E-02
114	GO:0009269: response to desiccation	1.52E-02
115	GO:0055114: oxidation-reduction process	1.61E-02
116	GO:0016226: iron-sulfur cluster assembly	1.62E-02
117	GO:0006730: one-carbon metabolic process	1.62E-02
118	GO:0006012: galactose metabolic process	1.72E-02
119	GO:0009306: protein secretion	1.83E-02
120	GO:0032259: methylation	1.92E-02
121	GO:0008284: positive regulation of cell proliferation	1.94E-02
122	GO:0016117: carotenoid biosynthetic process	1.94E-02
123	GO:0042147: retrograde transport, endosome to Golgi	1.94E-02
124	GO:0016042: lipid catabolic process	1.96E-02
125	GO:0080022: primary root development	2.05E-02
126	GO:0010087: phloem or xylem histogenesis	2.05E-02
127	GO:0009058: biosynthetic process	2.13E-02
128	GO:0006885: regulation of pH	2.16E-02
129	GO:0010197: polar nucleus fusion	2.16E-02
130	GO:0006814: sodium ion transport	2.27E-02
131	GO:0048825: cotyledon development	2.39E-02
132	GO:0019252: starch biosynthetic process	2.39E-02
133	GO:0009556: microsporogenesis	2.39E-02
134	GO:0009851: auxin biosynthetic process	2.39E-02
135	GO:0006623: protein targeting to vacuole	2.39E-02
136	GO:0006891: intra-Golgi vesicle-mediated transport	2.51E-02
137	GO:0009630: gravitropism	2.63E-02
138	GO:1901657: glycosyl compound metabolic process	2.75E-02
139	GO:0010027: thylakoid membrane organization	3.26E-02
140	GO:0009607: response to biotic stimulus	3.39E-02
141	GO:0006888: ER to Golgi vesicle-mediated transport	3.66E-02
142	GO:0009735: response to cytokinin	3.71E-02
143	GO:0048481: plant ovule development	3.93E-02
144	GO:0018298: protein-chromophore linkage	3.93E-02
145	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
146	GO:0009555: pollen development	4.14E-02
147	GO:0010218: response to far red light	4.22E-02
148	GO:0009637: response to blue light	4.66E-02
149	GO:0009853: photorespiration	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
3	GO:0004823: leucine-tRNA ligase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0090711: FMN hydrolase activity	0.00E+00
7	GO:0002161: aminoacyl-tRNA editing activity	1.07E-05
8	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.39E-05
9	GO:0004853: uroporphyrinogen decarboxylase activity	2.53E-04
10	GO:0042586: peptide deformylase activity	2.53E-04
11	GO:0004856: xylulokinase activity	2.53E-04
12	GO:0034256: chlorophyll(ide) b reductase activity	2.53E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.53E-04
14	GO:0045486: naringenin 3-dioxygenase activity	2.53E-04
15	GO:1905201: gibberellin transmembrane transporter activity	2.53E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	5.59E-04
17	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.59E-04
18	GO:0016630: protochlorophyllide reductase activity	5.59E-04
19	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.59E-04
20	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.59E-04
21	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.59E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	5.59E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	5.59E-04
24	GO:0033201: alpha-1,4-glucan synthase activity	5.59E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	5.59E-04
26	GO:0015386: potassium:proton antiporter activity	5.62E-04
27	GO:0004148: dihydrolipoyl dehydrogenase activity	9.07E-04
28	GO:0004751: ribose-5-phosphate isomerase activity	9.07E-04
29	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.07E-04
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.07E-04
31	GO:0008864: formyltetrahydrofolate deformylase activity	9.07E-04
32	GO:0004373: glycogen (starch) synthase activity	9.07E-04
33	GO:0016851: magnesium chelatase activity	1.29E-03
34	GO:0003999: adenine phosphoribosyltransferase activity	1.29E-03
35	GO:0016149: translation release factor activity, codon specific	1.29E-03
36	GO:0022890: inorganic cation transmembrane transporter activity	1.29E-03
37	GO:0045430: chalcone isomerase activity	1.73E-03
38	GO:0009011: starch synthase activity	1.73E-03
39	GO:0016279: protein-lysine N-methyltransferase activity	1.73E-03
40	GO:0003727: single-stranded RNA binding	1.75E-03
41	GO:0004812: aminoacyl-tRNA ligase activity	1.90E-03
42	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.21E-03
43	GO:0003959: NADPH dehydrogenase activity	2.21E-03
44	GO:0016846: carbon-sulfur lyase activity	2.21E-03
45	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.72E-03
46	GO:0015081: sodium ion transmembrane transporter activity	2.72E-03
47	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.72E-03
48	GO:0048038: quinone binding	2.72E-03
49	GO:0004629: phospholipase C activity	2.72E-03
50	GO:0004435: phosphatidylinositol phospholipase C activity	3.27E-03
51	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.27E-03
52	GO:0019843: rRNA binding	3.58E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	4.48E-03
54	GO:0008271: secondary active sulfate transmembrane transporter activity	5.13E-03
55	GO:0016491: oxidoreductase activity	5.44E-03
56	GO:0003747: translation release factor activity	5.81E-03
57	GO:0071949: FAD binding	5.81E-03
58	GO:0016844: strictosidine synthase activity	6.52E-03
59	GO:0008515: sucrose transmembrane transporter activity	8.04E-03
60	GO:0008559: xenobiotic-transporting ATPase activity	8.04E-03
61	GO:0000049: tRNA binding	8.83E-03
62	GO:0015116: sulfate transmembrane transporter activity	8.83E-03
63	GO:0043621: protein self-association	9.04E-03
64	GO:0003725: double-stranded RNA binding	9.66E-03
65	GO:0004022: alcohol dehydrogenase (NAD) activity	9.66E-03
66	GO:0004089: carbonate dehydratase activity	9.66E-03
67	GO:0031072: heat shock protein binding	9.66E-03
68	GO:0008083: growth factor activity	1.05E-02
69	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.05E-02
70	GO:0051119: sugar transmembrane transporter activity	1.14E-02
71	GO:0031409: pigment binding	1.23E-02
72	GO:0051536: iron-sulfur cluster binding	1.32E-02
73	GO:0031418: L-ascorbic acid binding	1.32E-02
74	GO:0005528: FK506 binding	1.32E-02
75	GO:0015079: potassium ion transmembrane transporter activity	1.42E-02
76	GO:0003713: transcription coactivator activity	2.16E-02
77	GO:0004252: serine-type endopeptidase activity	2.24E-02
78	GO:0015299: solute:proton antiporter activity	2.27E-02
79	GO:0008565: protein transporter activity	2.42E-02
80	GO:0015385: sodium:proton antiporter activity	2.75E-02
81	GO:0016791: phosphatase activity	2.87E-02
82	GO:0016597: amino acid binding	3.13E-02
83	GO:0003723: RNA binding	3.25E-02
84	GO:0016168: chlorophyll binding	3.39E-02
85	GO:0102483: scopolin beta-glucosidase activity	3.66E-02
86	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.93E-02
87	GO:0015238: drug transmembrane transporter activity	4.08E-02
88	GO:0008168: methyltransferase activity	4.14E-02
89	GO:0016788: hydrolase activity, acting on ester bonds	4.38E-02
90	GO:0003993: acid phosphatase activity	4.80E-02
91	GO:0008422: beta-glucosidase activity	4.95E-02
92	GO:0000149: SNARE binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.59E-25
3	GO:0009570: chloroplast stroma	1.48E-13
4	GO:0009535: chloroplast thylakoid membrane	3.33E-13
5	GO:0009941: chloroplast envelope	2.57E-06
6	GO:0009534: chloroplast thylakoid	8.20E-06
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.04E-05
8	GO:0031969: chloroplast membrane	1.14E-05
9	GO:0009579: thylakoid	5.43E-05
10	GO:0009543: chloroplast thylakoid lumen	6.16E-04
11	GO:0033281: TAT protein transport complex	9.07E-04
12	GO:0010007: magnesium chelatase complex	9.07E-04
13	GO:0031977: thylakoid lumen	1.07E-03
14	GO:0042651: thylakoid membrane	1.23E-03
15	GO:0009517: PSII associated light-harvesting complex II	1.73E-03
16	GO:0009840: chloroplastic endopeptidase Clp complex	3.27E-03
17	GO:0031982: vesicle	4.48E-03
18	GO:0012507: ER to Golgi transport vesicle membrane	4.48E-03
19	GO:0009501: amyloplast	4.48E-03
20	GO:0005763: mitochondrial small ribosomal subunit	5.81E-03
21	GO:0032040: small-subunit processome	8.83E-03
22	GO:0009508: plastid chromosome	9.66E-03
23	GO:0030076: light-harvesting complex	1.14E-02
24	GO:0009654: photosystem II oxygen evolving complex	1.42E-02
25	GO:0009532: plastid stroma	1.52E-02
26	GO:0015935: small ribosomal subunit	1.52E-02
27	GO:0010287: plastoglobule	1.91E-02
28	GO:0005623: cell	2.07E-02
29	GO:0009522: photosystem I	2.27E-02
30	GO:0009523: photosystem II	2.39E-02
31	GO:0019898: extrinsic component of membrane	2.39E-02
32	GO:0009295: nucleoid	3.00E-02
33	GO:0009707: chloroplast outer membrane	3.93E-02
34	GO:0000325: plant-type vacuole	4.36E-02