co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046680: response to DDT	0.00E+00
2	GO:0002084: protein depalmitoylation	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0006903: vesicle targeting	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	1.95E-07
6	GO:0030163: protein catabolic process	2.32E-07
7	GO:0034976: response to endoplasmic reticulum stress	3.20E-05
8	GO:0046686: response to cadmium ion	5.03E-05
9	GO:0048827: phyllome development	6.12E-05
10	GO:0042176: regulation of protein catabolic process	6.12E-05
11	GO:0009612: response to mechanical stimulus	8.53E-05
12	GO:1900384: regulation of flavonol biosynthetic process	1.84E-04
13	GO:1900424: regulation of defense response to bacterium	1.84E-04
14	GO:0035266: meristem growth	1.84E-04
15	GO:0007292: female gamete generation	1.84E-04
16	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.84E-04
17	GO:0000032: cell wall mannoprotein biosynthetic process	1.84E-04
18	GO:0045454: cell redox homeostasis	3.42E-04
19	GO:0006886: intracellular protein transport	3.63E-04
20	GO:0080026: response to indolebutyric acid	4.15E-04
21	GO:0050688: regulation of defense response to virus	4.15E-04
22	GO:0009156: ribonucleoside monophosphate biosynthetic process	4.15E-04
23	GO:0035335: peptidyl-tyrosine dephosphorylation	4.15E-04
24	GO:2000072: regulation of defense response to fungus, incompatible interaction	4.15E-04
25	GO:0009805: coumarin biosynthetic process	4.15E-04
26	GO:0031124: mRNA 3'-end processing	4.15E-04
27	GO:0051788: response to misfolded protein	4.15E-04
28	GO:0009225: nucleotide-sugar metabolic process	5.92E-04
29	GO:0009062: fatty acid catabolic process	6.76E-04
30	GO:0010253: UDP-rhamnose biosynthetic process	6.76E-04
31	GO:0006517: protein deglycosylation	6.76E-04
32	GO:0033591: response to L-ascorbic acid	6.76E-04
33	GO:0060968: regulation of gene silencing	6.76E-04
34	GO:0002679: respiratory burst involved in defense response	9.65E-04
35	GO:0006612: protein targeting to membrane	9.65E-04
36	GO:0006893: Golgi to plasma membrane transport	9.65E-04
37	GO:0071786: endoplasmic reticulum tubular network organization	9.65E-04
38	GO:0080024: indolebutyric acid metabolic process	9.65E-04
39	GO:0006515: misfolded or incompletely synthesized protein catabolic process	9.65E-04
40	GO:0009298: GDP-mannose biosynthetic process	9.65E-04
41	GO:0051603: proteolysis involved in cellular protein catabolic process	1.02E-03
42	GO:0009165: nucleotide biosynthetic process	1.28E-03
43	GO:0033320: UDP-D-xylose biosynthetic process	1.28E-03
44	GO:1902584: positive regulation of response to water deprivation	1.28E-03
45	GO:0010363: regulation of plant-type hypersensitive response	1.28E-03
46	GO:0033356: UDP-L-arabinose metabolic process	1.28E-03
47	GO:0005513: detection of calcium ion	1.63E-03
48	GO:0045927: positive regulation of growth	1.63E-03
49	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.01E-03
50	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.01E-03
51	GO:0048232: male gamete generation	2.01E-03
52	GO:0006555: methionine metabolic process	2.01E-03
53	GO:0043248: proteasome assembly	2.01E-03
54	GO:0042732: D-xylose metabolic process	2.01E-03
55	GO:0010315: auxin efflux	2.01E-03
56	GO:0015031: protein transport	2.05E-03
57	GO:0019509: L-methionine salvage from methylthioadenosine	2.41E-03
58	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.41E-03
59	GO:0034389: lipid particle organization	2.41E-03
60	GO:0006401: RNA catabolic process	2.83E-03
61	GO:0006744: ubiquinone biosynthetic process	2.83E-03
62	GO:0080186: developmental vegetative growth	2.83E-03
63	GO:0006888: ER to Golgi vesicle-mediated transport	2.94E-03
64	GO:0006491: N-glycan processing	3.28E-03
65	GO:0006605: protein targeting	3.28E-03
66	GO:0010078: maintenance of root meristem identity	3.28E-03
67	GO:0050821: protein stabilization	3.28E-03
68	GO:0006499: N-terminal protein myristoylation	3.59E-03
69	GO:0009699: phenylpropanoid biosynthetic process	3.75E-03
70	GO:0006002: fructose 6-phosphate metabolic process	3.75E-03
71	GO:0015996: chlorophyll catabolic process	3.75E-03
72	GO:0060321: acceptance of pollen	3.75E-03
73	GO:0010043: response to zinc ion	3.76E-03
74	GO:0045087: innate immune response	4.12E-03
75	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.25E-03
76	GO:0006379: mRNA cleavage	4.25E-03
77	GO:0046685: response to arsenic-containing substance	4.25E-03
78	GO:0009651: response to salt stress	4.73E-03
79	GO:0010205: photoinhibition	4.76E-03
80	GO:0043067: regulation of programmed cell death	4.76E-03
81	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.76E-03
82	GO:0048829: root cap development	5.30E-03
83	GO:0051555: flavonol biosynthetic process	5.30E-03
84	GO:0009860: pollen tube growth	5.79E-03
85	GO:0072593: reactive oxygen species metabolic process	5.85E-03
86	GO:0006378: mRNA polyadenylation	5.85E-03
87	GO:0046856: phosphatidylinositol dephosphorylation	5.85E-03
88	GO:0010015: root morphogenesis	5.85E-03
89	GO:0006790: sulfur compound metabolic process	6.43E-03
90	GO:0009846: pollen germination	6.65E-03
91	GO:0055046: microgametogenesis	7.03E-03
92	GO:0006486: protein glycosylation	7.14E-03
93	GO:0016192: vesicle-mediated transport	7.38E-03
94	GO:0009933: meristem structural organization	7.64E-03
95	GO:0019853: L-ascorbic acid biosynthetic process	8.27E-03
96	GO:0090351: seedling development	8.27E-03
97	GO:0046854: phosphatidylinositol phosphorylation	8.27E-03
98	GO:0010053: root epidermal cell differentiation	8.27E-03
99	GO:0007031: peroxisome organization	8.27E-03
100	GO:0006457: protein folding	8.59E-03
101	GO:0010187: negative regulation of seed germination	9.60E-03
102	GO:0009116: nucleoside metabolic process	9.60E-03
103	GO:0000027: ribosomal large subunit assembly	9.60E-03
104	GO:0006338: chromatin remodeling	9.60E-03
105	GO:0008299: isoprenoid biosynthetic process	1.03E-02
106	GO:0019915: lipid storage	1.10E-02
107	GO:0009408: response to heat	1.14E-02
108	GO:0009814: defense response, incompatible interaction	1.17E-02
109	GO:0030433: ubiquitin-dependent ERAD pathway	1.17E-02
110	GO:0007005: mitochondrion organization	1.17E-02
111	GO:0080092: regulation of pollen tube growth	1.17E-02
112	GO:0019748: secondary metabolic process	1.17E-02
113	GO:0042127: regulation of cell proliferation	1.32E-02
114	GO:0042147: retrograde transport, endosome to Golgi	1.40E-02
115	GO:0009790: embryo development	1.49E-02
116	GO:0009646: response to absence of light	1.64E-02
117	GO:0010183: pollen tube guidance	1.73E-02
118	GO:0000302: response to reactive oxygen species	1.81E-02
119	GO:0006635: fatty acid beta-oxidation	1.81E-02
120	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.98E-02
121	GO:0006470: protein dephosphorylation	2.02E-02
122	GO:0006904: vesicle docking involved in exocytosis	2.17E-02
123	GO:0009816: defense response to bacterium, incompatible interaction	2.45E-02
124	GO:0030244: cellulose biosynthetic process	2.84E-02
125	GO:0009817: defense response to fungus, incompatible interaction	2.84E-02
126	GO:0010311: lateral root formation	2.94E-02
127	GO:0009832: plant-type cell wall biogenesis	2.94E-02
128	GO:0048767: root hair elongation	2.94E-02
129	GO:0006811: ion transport	3.05E-02
130	GO:0009407: toxin catabolic process	3.05E-02
131	GO:0007568: aging	3.15E-02
132	GO:0009867: jasmonic acid mediated signaling pathway	3.36E-02
133	GO:0016051: carbohydrate biosynthetic process	3.36E-02
134	GO:0034599: cellular response to oxidative stress	3.47E-02
135	GO:0006887: exocytosis	3.80E-02
136	GO:0006631: fatty acid metabolic process	3.80E-02
137	GO:0009926: auxin polar transport	4.03E-02
138	GO:0009744: response to sucrose	4.03E-02
139	GO:0009644: response to high light intensity	4.26E-02
140	GO:0009636: response to toxic substance	4.38E-02
141	GO:0009965: leaf morphogenesis	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	1.33E-06
5	GO:0003756: protein disulfide isomerase activity	7.78E-05
6	GO:0102293: pheophytinase b activity	1.84E-04
7	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	1.84E-04
8	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.84E-04
9	GO:0004476: mannose-6-phosphate isomerase activity	1.84E-04
10	GO:0030234: enzyme regulator activity	3.10E-04
11	GO:0004722: protein serine/threonine phosphatase activity	4.06E-04
12	GO:0047746: chlorophyllase activity	4.15E-04
13	GO:0010297: heteropolysaccharide binding	4.15E-04
14	GO:0008460: dTDP-glucose 4,6-dehydratase activity	4.15E-04
15	GO:0051879: Hsp90 protein binding	4.15E-04
16	GO:0010280: UDP-L-rhamnose synthase activity	4.15E-04
17	GO:0050347: trans-octaprenyltranstransferase activity	4.15E-04
18	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.15E-04
19	GO:0008805: carbon-monoxide oxygenase activity	4.15E-04
20	GO:0070361: mitochondrial light strand promoter anti-sense binding	4.15E-04
21	GO:0051731: polynucleotide 5'-hydroxyl-kinase activity	4.15E-04
22	GO:0050377: UDP-glucose 4,6-dehydratase activity	4.15E-04
23	GO:0004190: aspartic-type endopeptidase activity	5.92E-04
24	GO:0004725: protein tyrosine phosphatase activity	6.59E-04
25	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.76E-04
26	GO:0000030: mannosyltransferase activity	6.76E-04
27	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.76E-04
28	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.65E-04
29	GO:0004749: ribose phosphate diphosphokinase activity	9.65E-04
30	GO:0070628: proteasome binding	1.28E-03
31	GO:0004659: prenyltransferase activity	1.28E-03
32	GO:0008233: peptidase activity	1.31E-03
33	GO:0031593: polyubiquitin binding	2.01E-03
34	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.01E-03
35	GO:0016688: L-ascorbate peroxidase activity	2.01E-03
36	GO:0036402: proteasome-activating ATPase activity	2.01E-03
37	GO:0048040: UDP-glucuronate decarboxylase activity	2.01E-03
38	GO:0008474: palmitoyl-(protein) hydrolase activity	2.01E-03
39	GO:0004130: cytochrome-c peroxidase activity	2.01E-03
40	GO:0070403: NAD+ binding	2.41E-03
41	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.41E-03
42	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.41E-03
43	GO:0008375: acetylglucosaminyltransferase activity	2.79E-03
44	GO:0008320: protein transmembrane transporter activity	2.83E-03
45	GO:0003872: 6-phosphofructokinase activity	2.83E-03
46	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.94E-03
47	GO:0003746: translation elongation factor activity	4.12E-03
48	GO:0004161: dimethylallyltranstransferase activity	5.85E-03
49	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.43E-03
50	GO:0031072: heat shock protein binding	7.03E-03
51	GO:0017025: TBP-class protein binding	8.27E-03
52	GO:0043130: ubiquitin binding	9.60E-03
53	GO:0004176: ATP-dependent peptidase activity	1.10E-02
54	GO:0008408: 3'-5' exonuclease activity	1.10E-02
55	GO:0047134: protein-disulfide reductase activity	1.40E-02
56	GO:0004402: histone acetyltransferase activity	1.48E-02
57	GO:0004527: exonuclease activity	1.56E-02
58	GO:0004791: thioredoxin-disulfide reductase activity	1.64E-02
59	GO:0016853: isomerase activity	1.64E-02
60	GO:0004518: nuclease activity	1.90E-02
61	GO:0003824: catalytic activity	1.94E-02
62	GO:0016887: ATPase activity	1.98E-02
63	GO:0008237: metallopeptidase activity	2.17E-02
64	GO:0051213: dioxygenase activity	2.35E-02
65	GO:0004721: phosphoprotein phosphatase activity	2.64E-02
66	GO:0008236: serine-type peptidase activity	2.74E-02
67	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.84E-02
68	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.36E-02
69	GO:0030246: carbohydrate binding	3.40E-02
70	GO:0004364: glutathione transferase activity	3.92E-02
71	GO:0046872: metal ion binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0000502: proteasome complex	1.47E-13
3	GO:0005839: proteasome core complex	2.09E-08
4	GO:0008541: proteasome regulatory particle, lid subcomplex	1.51E-07
5	GO:0005788: endoplasmic reticulum lumen	5.27E-07
6	GO:0005829: cytosol	2.37E-06
7	GO:0005783: endoplasmic reticulum	8.56E-06
8	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.45E-04
9	GO:0009510: plasmodesmatal desmotubule	1.84E-04
10	GO:0005794: Golgi apparatus	2.08E-04
11	GO:0005838: proteasome regulatory particle	6.76E-04
12	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.76E-04
13	GO:0030132: clathrin coat of coated pit	6.76E-04
14	GO:0071782: endoplasmic reticulum tubular network	9.65E-04
15	GO:0005849: mRNA cleavage factor complex	9.65E-04
16	GO:0005737: cytoplasm	1.11E-03
17	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.28E-03
18	GO:0030660: Golgi-associated vesicle membrane	1.28E-03
19	GO:0005945: 6-phosphofructokinase complex	1.63E-03
20	GO:0030127: COPII vesicle coat	2.01E-03
21	GO:0030904: retromer complex	2.01E-03
22	GO:0032580: Golgi cisterna membrane	2.10E-03
23	GO:0031597: cytosolic proteasome complex	2.41E-03
24	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.83E-03
25	GO:0031595: nuclear proteasome complex	2.83E-03
26	GO:0031982: vesicle	3.28E-03
27	GO:0005811: lipid particle	3.75E-03
28	GO:0000326: protein storage vacuole	3.75E-03
29	GO:0019773: proteasome core complex, alpha-subunit complex	3.75E-03
30	GO:0008540: proteasome regulatory particle, base subcomplex	4.76E-03
31	GO:0005765: lysosomal membrane	5.85E-03
32	GO:0031307: integral component of mitochondrial outer membrane	6.43E-03
33	GO:0005789: endoplasmic reticulum membrane	9.90E-03
34	GO:0005623: cell	1.31E-02
35	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.32E-02
36	GO:0009504: cell plate	1.73E-02
37	GO:0000145: exocyst	1.90E-02
38	GO:0016592: mediator complex	1.90E-02
39	GO:0005778: peroxisomal membrane	2.17E-02
40	GO:0009536: plastid	2.29E-02
41	GO:0019005: SCF ubiquitin ligase complex	2.84E-02
42	GO:0009506: plasmodesma	3.73E-02
43	GO:0031902: late endosome membrane	3.80E-02
44	GO:0005774: vacuolar membrane	3.95E-02
45	GO:0005856: cytoskeleton	4.38E-02
46	GO:0005622: intracellular	4.78E-02