Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G21210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0070979: protein K11-linked ubiquitination0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
6GO:0090071: negative regulation of ribosome biogenesis0.00E+00
7GO:0090279: regulation of calcium ion import0.00E+00
8GO:0000372: Group I intron splicing0.00E+00
9GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0006573: valine metabolic process0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0015882: L-ascorbic acid transport0.00E+00
13GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
14GO:0008298: intracellular mRNA localization0.00E+00
15GO:0071474: cellular hyperosmotic response0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
18GO:0070125: mitochondrial translational elongation0.00E+00
19GO:0045038: protein import into chloroplast thylakoid membrane1.39E-06
20GO:1900871: chloroplast mRNA modification5.37E-06
21GO:1902326: positive regulation of chlorophyll biosynthetic process5.37E-06
22GO:0009658: chloroplast organization2.40E-05
23GO:0010239: chloroplast mRNA processing4.18E-05
24GO:2001141: regulation of RNA biosynthetic process4.18E-05
25GO:0080110: sporopollenin biosynthetic process1.16E-04
26GO:1901259: chloroplast rRNA processing2.28E-04
27GO:0010028: xanthophyll cycle3.44E-04
28GO:2000905: negative regulation of starch metabolic process3.44E-04
29GO:0048363: mucilage pectin metabolic process3.44E-04
30GO:0006419: alanyl-tRNA aminoacylation3.44E-04
31GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.44E-04
32GO:0009090: homoserine biosynthetic process3.44E-04
33GO:0031426: polycistronic mRNA processing3.44E-04
34GO:0046900: tetrahydrofolylpolyglutamate metabolic process3.44E-04
35GO:0051382: kinetochore assembly3.44E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process3.44E-04
37GO:0000012: single strand break repair3.44E-04
38GO:0043266: regulation of potassium ion transport3.44E-04
39GO:0010063: positive regulation of trichoblast fate specification3.44E-04
40GO:1904964: positive regulation of phytol biosynthetic process3.44E-04
41GO:0006551: leucine metabolic process3.44E-04
42GO:2000021: regulation of ion homeostasis3.44E-04
43GO:0070574: cadmium ion transmembrane transport3.44E-04
44GO:0051247: positive regulation of protein metabolic process3.44E-04
45GO:1902458: positive regulation of stomatal opening3.44E-04
46GO:0009451: RNA modification4.13E-04
47GO:0071482: cellular response to light stimulus4.56E-04
48GO:0048507: meristem development5.47E-04
49GO:0000373: Group II intron splicing5.47E-04
50GO:1900865: chloroplast RNA modification6.45E-04
51GO:1903426: regulation of reactive oxygen species biosynthetic process7.51E-04
52GO:0031297: replication fork processing7.51E-04
53GO:0051262: protein tetramerization7.51E-04
54GO:0060359: response to ammonium ion7.51E-04
55GO:0006432: phenylalanyl-tRNA aminoacylation7.51E-04
56GO:0071668: plant-type cell wall assembly7.51E-04
57GO:1904143: positive regulation of carotenoid biosynthetic process7.51E-04
58GO:0001682: tRNA 5'-leader removal7.51E-04
59GO:0006352: DNA-templated transcription, initiation8.68E-04
60GO:0006415: translational termination8.68E-04
61GO:0048586: regulation of long-day photoperiodism, flowering1.21E-03
62GO:0006954: inflammatory response1.21E-03
63GO:0031145: anaphase-promoting complex-dependent catabolic process1.21E-03
64GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.21E-03
65GO:0006696: ergosterol biosynthetic process1.21E-03
66GO:0043157: response to cation stress1.21E-03
67GO:0005977: glycogen metabolic process1.21E-03
68GO:0010207: photosystem II assembly1.26E-03
69GO:0010071: root meristem specification1.75E-03
70GO:0009102: biotin biosynthetic process1.75E-03
71GO:0030071: regulation of mitotic metaphase/anaphase transition1.75E-03
72GO:0009226: nucleotide-sugar biosynthetic process1.75E-03
73GO:0046739: transport of virus in multicellular host1.75E-03
74GO:0051016: barbed-end actin filament capping1.75E-03
75GO:0042989: sequestering of actin monomers1.75E-03
76GO:0016556: mRNA modification1.75E-03
77GO:0009067: aspartate family amino acid biosynthetic process1.75E-03
78GO:0009416: response to light stimulus1.94E-03
79GO:0009793: embryo development ending in seed dormancy2.15E-03
80GO:0042274: ribosomal small subunit biogenesis2.35E-03
81GO:0048442: sepal development2.35E-03
82GO:0006661: phosphatidylinositol biosynthetic process2.35E-03
83GO:2000306: positive regulation of photomorphogenesis2.35E-03
84GO:0008295: spermidine biosynthetic process2.35E-03
85GO:0010021: amylopectin biosynthetic process2.35E-03
86GO:0010584: pollen exine formation2.74E-03
87GO:0016123: xanthophyll biosynthetic process3.00E-03
88GO:0032876: negative regulation of DNA endoreduplication3.00E-03
89GO:0030041: actin filament polymerization3.00E-03
90GO:0032543: mitochondrial translation3.00E-03
91GO:0008033: tRNA processing3.20E-03
92GO:0006662: glycerol ether metabolic process3.45E-03
93GO:0010305: leaf vascular tissue pattern formation3.45E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.71E-03
95GO:0009959: negative gravitropism3.71E-03
96GO:0006655: phosphatidylglycerol biosynthetic process3.71E-03
97GO:0016554: cytidine to uridine editing3.71E-03
98GO:0032973: amino acid export3.71E-03
99GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.71E-03
100GO:0080086: stamen filament development4.47E-03
101GO:0042372: phylloquinone biosynthetic process4.47E-03
102GO:0010076: maintenance of floral meristem identity4.47E-03
103GO:0009082: branched-chain amino acid biosynthetic process4.47E-03
104GO:0017148: negative regulation of translation4.47E-03
105GO:0048280: vesicle fusion with Golgi apparatus4.47E-03
106GO:0009099: valine biosynthetic process4.47E-03
107GO:0009088: threonine biosynthetic process4.47E-03
108GO:0032502: developmental process4.55E-03
109GO:0009742: brassinosteroid mediated signaling pathway5.17E-03
110GO:0009395: phospholipid catabolic process5.27E-03
111GO:0043090: amino acid import5.27E-03
112GO:0051693: actin filament capping5.27E-03
113GO:0048437: floral organ development5.27E-03
114GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.27E-03
115GO:0006400: tRNA modification5.27E-03
116GO:0051510: regulation of unidimensional cell growth5.27E-03
117GO:0000712: resolution of meiotic recombination intermediates5.27E-03
118GO:0048564: photosystem I assembly6.13E-03
119GO:0042255: ribosome assembly6.13E-03
120GO:0046620: regulation of organ growth6.13E-03
121GO:0032875: regulation of DNA endoreduplication6.13E-03
122GO:0006353: DNA-templated transcription, termination6.13E-03
123GO:0070413: trehalose metabolism in response to stress6.13E-03
124GO:2000070: regulation of response to water deprivation6.13E-03
125GO:0006875: cellular metal ion homeostasis6.13E-03
126GO:0000105: histidine biosynthetic process6.13E-03
127GO:0010027: thylakoid membrane organization6.16E-03
128GO:0007129: synapsis7.03E-03
129GO:0015996: chlorophyll catabolic process7.03E-03
130GO:0007186: G-protein coupled receptor signaling pathway7.03E-03
131GO:0009097: isoleucine biosynthetic process7.03E-03
132GO:0010497: plasmodesmata-mediated intercellular transport7.03E-03
133GO:0009657: plastid organization7.03E-03
134GO:0032544: plastid translation7.03E-03
135GO:0015995: chlorophyll biosynthetic process7.26E-03
136GO:0098656: anion transmembrane transport7.97E-03
137GO:0080144: amino acid homeostasis7.97E-03
138GO:0000902: cell morphogenesis7.97E-03
139GO:0006779: porphyrin-containing compound biosynthetic process8.96E-03
140GO:0009098: leucine biosynthetic process8.96E-03
141GO:0009086: methionine biosynthetic process8.96E-03
142GO:0048354: mucilage biosynthetic process involved in seed coat development8.96E-03
143GO:0009299: mRNA transcription1.00E-02
144GO:0006896: Golgi to vacuole transport1.00E-02
145GO:0006782: protoporphyrinogen IX biosynthetic process1.00E-02
146GO:0048441: petal development1.00E-02
147GO:0034599: cellular response to oxidative stress1.07E-02
148GO:0009089: lysine biosynthetic process via diaminopimelate1.11E-02
149GO:0043085: positive regulation of catalytic activity1.11E-02
150GO:0009773: photosynthetic electron transport in photosystem I1.11E-02
151GO:0007166: cell surface receptor signaling pathway1.14E-02
152GO:0055114: oxidation-reduction process1.15E-02
153GO:0016024: CDP-diacylglycerol biosynthetic process1.22E-02
154GO:0045037: protein import into chloroplast stroma1.22E-02
155GO:0009725: response to hormone1.33E-02
156GO:0010628: positive regulation of gene expression1.33E-02
157GO:0030036: actin cytoskeleton organization1.33E-02
158GO:0009718: anthocyanin-containing compound biosynthetic process1.33E-02
159GO:0006302: double-strand break repair1.45E-02
160GO:0048440: carpel development1.45E-02
161GO:0006541: glutamine metabolic process1.45E-02
162GO:0007015: actin filament organization1.45E-02
163GO:0019853: L-ascorbic acid biosynthetic process1.58E-02
164GO:0090351: seedling development1.58E-02
165GO:0010030: positive regulation of seed germination1.58E-02
166GO:0000162: tryptophan biosynthetic process1.70E-02
167GO:0007010: cytoskeleton organization1.83E-02
168GO:0005992: trehalose biosynthetic process1.83E-02
169GO:0008299: isoprenoid biosynthetic process1.96E-02
170GO:0016575: histone deacetylation1.96E-02
171GO:0006418: tRNA aminoacylation for protein translation1.96E-02
172GO:0007017: microtubule-based process1.96E-02
173GO:0048316: seed development2.18E-02
174GO:0006730: one-carbon metabolic process2.24E-02
175GO:0006012: galactose metabolic process2.38E-02
176GO:0009740: gibberellic acid mediated signaling pathway2.40E-02
177GO:0048443: stamen development2.53E-02
178GO:0042127: regulation of cell proliferation2.53E-02
179GO:0016117: carotenoid biosynthetic process2.68E-02
180GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.68E-02
181GO:0042147: retrograde transport, endosome to Golgi2.68E-02
182GO:0045454: cell redox homeostasis2.76E-02
183GO:0042631: cellular response to water deprivation2.83E-02
184GO:0000271: polysaccharide biosynthetic process2.83E-02
185GO:0010087: phloem or xylem histogenesis2.83E-02
186GO:0009741: response to brassinosteroid2.99E-02
187GO:0045489: pectin biosynthetic process2.99E-02
188GO:0010182: sugar mediated signaling pathway2.99E-02
189GO:0009646: response to absence of light3.15E-02
190GO:0006623: protein targeting to vacuole3.31E-02
191GO:0009791: post-embryonic development3.31E-02
192GO:0019252: starch biosynthetic process3.31E-02
193GO:0008654: phospholipid biosynthetic process3.31E-02
194GO:0055072: iron ion homeostasis3.31E-02
195GO:0006891: intra-Golgi vesicle-mediated transport3.47E-02
196GO:0006281: DNA repair3.58E-02
197GO:0009630: gravitropism3.64E-02
198GO:0016032: viral process3.64E-02
199GO:0006397: mRNA processing3.78E-02
200GO:0006464: cellular protein modification process3.98E-02
201GO:0040008: regulation of growth4.19E-02
202GO:0016126: sterol biosynthetic process4.51E-02
203GO:0005975: carbohydrate metabolic process4.59E-02
204GO:0010029: regulation of seed germination4.69E-02
205GO:0046686: response to cadmium ion4.79E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0005048: signal sequence binding0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
5GO:0019144: ADP-sugar diphosphatase activity0.00E+00
6GO:0010349: L-galactose dehydrogenase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0042903: tubulin deacetylase activity0.00E+00
11GO:0015229: L-ascorbic acid transporter activity0.00E+00
12GO:0004823: leucine-tRNA ligase activity0.00E+00
13GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
14GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
15GO:0046905: phytoene synthase activity0.00E+00
16GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
17GO:0003723: RNA binding1.06E-05
18GO:0001053: plastid sigma factor activity7.42E-05
19GO:0016987: sigma factor activity7.42E-05
20GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.44E-04
21GO:0005227: calcium activated cation channel activity3.44E-04
22GO:0080042: ADP-glucose pyrophosphohydrolase activity3.44E-04
23GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity3.44E-04
24GO:0004813: alanine-tRNA ligase activity3.44E-04
25GO:0003984: acetolactate synthase activity3.44E-04
26GO:0008242: omega peptidase activity3.44E-04
27GO:0051996: squalene synthase activity3.44E-04
28GO:0003690: double-stranded DNA binding5.35E-04
29GO:0003747: translation release factor activity5.47E-04
30GO:0004519: endonuclease activity7.36E-04
31GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.51E-04
32GO:0043425: bHLH transcription factor binding7.51E-04
33GO:0004766: spermidine synthase activity7.51E-04
34GO:0019156: isoamylase activity7.51E-04
35GO:0008805: carbon-monoxide oxygenase activity7.51E-04
36GO:0034722: gamma-glutamyl-peptidase activity7.51E-04
37GO:0004826: phenylalanine-tRNA ligase activity7.51E-04
38GO:0004412: homoserine dehydrogenase activity7.51E-04
39GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.51E-04
40GO:0003862: 3-isopropylmalate dehydrogenase activity7.51E-04
41GO:0017118: lipoyltransferase activity7.51E-04
42GO:0080041: ADP-ribose pyrophosphohydrolase activity7.51E-04
43GO:0016597: amino acid binding7.52E-04
44GO:0000049: tRNA binding9.90E-04
45GO:0004180: carboxypeptidase activity1.21E-03
46GO:0003913: DNA photolyase activity1.21E-03
47GO:0002161: aminoacyl-tRNA editing activity1.21E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity1.21E-03
49GO:0016805: dipeptidase activity1.21E-03
50GO:0070402: NADPH binding1.21E-03
51GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.26E-03
52GO:0004072: aspartate kinase activity1.75E-03
53GO:0048027: mRNA 5'-UTR binding1.75E-03
54GO:0015086: cadmium ion transmembrane transporter activity1.75E-03
55GO:0048487: beta-tubulin binding1.75E-03
56GO:0016149: translation release factor activity, codon specific1.75E-03
57GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.75E-03
58GO:0043023: ribosomal large subunit binding1.75E-03
59GO:0080032: methyl jasmonate esterase activity2.35E-03
60GO:0043495: protein anchor2.35E-03
61GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.35E-03
62GO:0047134: protein-disulfide reductase activity2.96E-03
63GO:0003785: actin monomer binding3.00E-03
64GO:0004791: thioredoxin-disulfide reductase activity3.71E-03
65GO:0080030: methyl indole-3-acetate esterase activity3.71E-03
66GO:0004526: ribonuclease P activity3.71E-03
67GO:0050662: coenzyme binding3.71E-03
68GO:0004556: alpha-amylase activity3.71E-03
69GO:0016208: AMP binding3.71E-03
70GO:0004462: lactoylglutathione lyase activity3.71E-03
71GO:0008200: ion channel inhibitor activity3.71E-03
72GO:0008195: phosphatidate phosphatase activity4.47E-03
73GO:0003730: mRNA 3'-UTR binding4.47E-03
74GO:0005261: cation channel activity4.47E-03
75GO:0004656: procollagen-proline 4-dioxygenase activity4.47E-03
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.85E-03
77GO:0019899: enzyme binding5.27E-03
78GO:0015103: inorganic anion transmembrane transporter activity5.27E-03
79GO:0008312: 7S RNA binding6.13E-03
80GO:0043022: ribosome binding6.13E-03
81GO:0004033: aldo-keto reductase (NADP) activity6.13E-03
82GO:0019843: rRNA binding6.39E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.03E-03
84GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.81E-03
85GO:0004222: metalloendopeptidase activity8.89E-03
86GO:0008047: enzyme activator activity1.00E-02
87GO:0004805: trehalose-phosphatase activity1.00E-02
88GO:0003746: translation elongation factor activity1.02E-02
89GO:0003993: acid phosphatase activity1.07E-02
90GO:0005089: Rho guanyl-nucleotide exchange factor activity1.11E-02
91GO:0009982: pseudouridine synthase activity1.33E-02
92GO:0016491: oxidoreductase activity1.33E-02
93GO:0005315: inorganic phosphate transmembrane transporter activity1.33E-02
94GO:0031072: heat shock protein binding1.33E-02
95GO:0008266: poly(U) RNA binding1.45E-02
96GO:0005525: GTP binding1.62E-02
97GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.79E-02
98GO:0031418: L-ascorbic acid binding1.83E-02
99GO:0004407: histone deacetylase activity1.83E-02
100GO:0005528: FK506 binding1.83E-02
101GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.24E-02
102GO:0022891: substrate-specific transmembrane transporter activity2.38E-02
103GO:0003779: actin binding2.47E-02
104GO:0008514: organic anion transmembrane transporter activity2.53E-02
105GO:0003727: single-stranded RNA binding2.53E-02
106GO:0015035: protein disulfide oxidoreductase activity2.62E-02
107GO:0004812: aminoacyl-tRNA ligase activity2.68E-02
108GO:0008026: ATP-dependent helicase activity2.70E-02
109GO:0008080: N-acetyltransferase activity2.99E-02
110GO:0004527: exonuclease activity2.99E-02
111GO:0046873: metal ion transmembrane transporter activity2.99E-02
112GO:0016853: isomerase activity3.15E-02
113GO:0016791: phosphatase activity3.98E-02
114GO:0008483: transaminase activity4.15E-02
115GO:0005200: structural constituent of cytoskeleton4.15E-02
116GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.15E-02
117GO:0016168: chlorophyll binding4.69E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009507: chloroplast2.29E-34
4GO:0009570: chloroplast stroma3.32E-12
5GO:0080085: signal recognition particle, chloroplast targeting5.37E-06
6GO:0009941: chloroplast envelope1.16E-04
7GO:0071821: FANCM-MHF complex3.44E-04
8GO:0043240: Fanconi anaemia nuclear complex3.44E-04
9GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.56E-04
10GO:0042644: chloroplast nucleoid5.47E-04
11GO:0009535: chloroplast thylakoid membrane7.08E-04
12GO:0000778: condensed nuclear chromosome kinetochore7.51E-04
13GO:0008290: F-actin capping protein complex7.51E-04
14GO:0009508: plastid chromosome1.12E-03
15GO:0009528: plastid inner membrane1.21E-03
16GO:0015630: microtubule cytoskeleton1.75E-03
17GO:0042646: plastid nucleoid1.75E-03
18GO:0042651: thylakoid membrane1.92E-03
19GO:0009532: plastid stroma2.11E-03
20GO:0030663: COPI-coated vesicle membrane2.35E-03
21GO:0009527: plastid outer membrane2.35E-03
22GO:0043231: intracellular membrane-bounded organelle2.97E-03
23GO:0009536: plastid3.93E-03
24GO:0031969: chloroplast membrane5.38E-03
25GO:0009295: nucleoid5.49E-03
26GO:0009501: amyloplast6.13E-03
27GO:0012507: ER to Golgi transport vesicle membrane6.13E-03
28GO:0030529: intracellular ribonucleoprotein complex6.16E-03
29GO:0005680: anaphase-promoting complex7.97E-03
30GO:0005759: mitochondrial matrix8.55E-03
31GO:0016604: nuclear body8.96E-03
32GO:0030125: clathrin vesicle coat1.00E-02
33GO:0005884: actin filament1.11E-02
34GO:0005938: cell cortex1.33E-02
35GO:0030176: integral component of endoplasmic reticulum membrane1.58E-02
36GO:0009654: photosystem II oxygen evolving complex1.96E-02
37GO:0015629: actin cytoskeleton2.38E-02
38GO:0009706: chloroplast inner membrane2.55E-02
39GO:0009543: chloroplast thylakoid lumen3.19E-02
40GO:0009523: photosystem II3.31E-02
41GO:0019898: extrinsic component of membrane3.31E-02
42GO:0010319: stromule4.15E-02
43GO:0005778: peroxisomal membrane4.15E-02
44GO:0009705: plant-type vacuole membrane4.38E-02
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Gene type



Gene DE type