GO Enrichment Analysis of Co-expressed Genes with
AT4G20960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 5 | GO:0042407: cristae formation | 0.00E+00 |
| 6 | GO:0007638: mechanosensory behavior | 0.00E+00 |
| 7 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 8 | GO:0017038: protein import | 0.00E+00 |
| 9 | GO:0018026: peptidyl-lysine monomethylation | 8.68E-07 |
| 10 | GO:0046739: transport of virus in multicellular host | 7.65E-06 |
| 11 | GO:0042793: transcription from plastid promoter | 3.53E-05 |
| 12 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.09E-04 |
| 13 | GO:0043686: co-translational protein modification | 1.31E-04 |
| 14 | GO:1902458: positive regulation of stomatal opening | 1.31E-04 |
| 15 | GO:0048363: mucilage pectin metabolic process | 1.31E-04 |
| 16 | GO:0005980: glycogen catabolic process | 1.31E-04 |
| 17 | GO:0010480: microsporocyte differentiation | 1.31E-04 |
| 18 | GO:0042759: long-chain fatty acid biosynthetic process | 1.31E-04 |
| 19 | GO:0015995: chlorophyll biosynthetic process | 1.66E-04 |
| 20 | GO:0031648: protein destabilization | 3.03E-04 |
| 21 | GO:0001682: tRNA 5'-leader removal | 3.03E-04 |
| 22 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.03E-04 |
| 23 | GO:0006568: tryptophan metabolic process | 3.03E-04 |
| 24 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 3.03E-04 |
| 25 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.03E-04 |
| 26 | GO:0071668: plant-type cell wall assembly | 3.03E-04 |
| 27 | GO:0006631: fatty acid metabolic process | 3.34E-04 |
| 28 | GO:2001295: malonyl-CoA biosynthetic process | 4.99E-04 |
| 29 | GO:0007231: osmosensory signaling pathway | 7.14E-04 |
| 30 | GO:0009102: biotin biosynthetic process | 7.14E-04 |
| 31 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.14E-04 |
| 32 | GO:0009793: embryo development ending in seed dormancy | 7.44E-04 |
| 33 | GO:0008033: tRNA processing | 8.42E-04 |
| 34 | GO:0006662: glycerol ether metabolic process | 9.05E-04 |
| 35 | GO:0010109: regulation of photosynthesis | 9.47E-04 |
| 36 | GO:0033500: carbohydrate homeostasis | 9.47E-04 |
| 37 | GO:0031365: N-terminal protein amino acid modification | 1.20E-03 |
| 38 | GO:0009107: lipoate biosynthetic process | 1.20E-03 |
| 39 | GO:0000304: response to singlet oxygen | 1.20E-03 |
| 40 | GO:0032543: mitochondrial translation | 1.20E-03 |
| 41 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.20E-03 |
| 42 | GO:0010405: arabinogalactan protein metabolic process | 1.47E-03 |
| 43 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.47E-03 |
| 44 | GO:0016554: cytidine to uridine editing | 1.47E-03 |
| 45 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.47E-03 |
| 46 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.47E-03 |
| 47 | GO:0033365: protein localization to organelle | 1.47E-03 |
| 48 | GO:0010027: thylakoid membrane organization | 1.58E-03 |
| 49 | GO:0009451: RNA modification | 1.72E-03 |
| 50 | GO:0042372: phylloquinone biosynthetic process | 1.76E-03 |
| 51 | GO:0017148: negative regulation of translation | 1.76E-03 |
| 52 | GO:0030488: tRNA methylation | 1.76E-03 |
| 53 | GO:0048437: floral organ development | 2.06E-03 |
| 54 | GO:0009813: flavonoid biosynthetic process | 2.15E-03 |
| 55 | GO:0000105: histidine biosynthetic process | 2.39E-03 |
| 56 | GO:0006605: protein targeting | 2.39E-03 |
| 57 | GO:2000070: regulation of response to water deprivation | 2.39E-03 |
| 58 | GO:0045087: innate immune response | 2.59E-03 |
| 59 | GO:0034599: cellular response to oxidative stress | 2.70E-03 |
| 60 | GO:0015996: chlorophyll catabolic process | 2.73E-03 |
| 61 | GO:0007186: G-protein coupled receptor signaling pathway | 2.73E-03 |
| 62 | GO:0009657: plastid organization | 2.73E-03 |
| 63 | GO:0009658: chloroplast organization | 2.90E-03 |
| 64 | GO:0048507: meristem development | 3.08E-03 |
| 65 | GO:0051865: protein autoubiquitination | 3.08E-03 |
| 66 | GO:0046916: cellular transition metal ion homeostasis | 3.08E-03 |
| 67 | GO:0043067: regulation of programmed cell death | 3.46E-03 |
| 68 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.46E-03 |
| 69 | GO:1900865: chloroplast RNA modification | 3.46E-03 |
| 70 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.46E-03 |
| 71 | GO:0045036: protein targeting to chloroplast | 3.84E-03 |
| 72 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.84E-03 |
| 73 | GO:0048229: gametophyte development | 4.24E-03 |
| 74 | GO:0006816: calcium ion transport | 4.24E-03 |
| 75 | GO:0019684: photosynthesis, light reaction | 4.24E-03 |
| 76 | GO:0009073: aromatic amino acid family biosynthetic process | 4.24E-03 |
| 77 | GO:0005983: starch catabolic process | 4.65E-03 |
| 78 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.65E-03 |
| 79 | GO:0045037: protein import into chloroplast stroma | 4.65E-03 |
| 80 | GO:0010075: regulation of meristem growth | 5.08E-03 |
| 81 | GO:0009691: cytokinin biosynthetic process | 5.08E-03 |
| 82 | GO:0009266: response to temperature stimulus | 5.52E-03 |
| 83 | GO:0009934: regulation of meristem structural organization | 5.52E-03 |
| 84 | GO:0010020: chloroplast fission | 5.52E-03 |
| 85 | GO:0010207: photosystem II assembly | 5.52E-03 |
| 86 | GO:0070588: calcium ion transmembrane transport | 5.97E-03 |
| 87 | GO:0000162: tryptophan biosynthetic process | 6.43E-03 |
| 88 | GO:0010025: wax biosynthetic process | 6.43E-03 |
| 89 | GO:0009742: brassinosteroid mediated signaling pathway | 6.73E-03 |
| 90 | GO:0006418: tRNA aminoacylation for protein translation | 7.40E-03 |
| 91 | GO:0048511: rhythmic process | 7.91E-03 |
| 92 | GO:0031408: oxylipin biosynthetic process | 7.91E-03 |
| 93 | GO:0030245: cellulose catabolic process | 8.42E-03 |
| 94 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 8.42E-03 |
| 95 | GO:0006633: fatty acid biosynthetic process | 1.00E-02 |
| 96 | GO:0048653: anther development | 1.06E-02 |
| 97 | GO:0000271: polysaccharide biosynthetic process | 1.06E-02 |
| 98 | GO:0000413: protein peptidyl-prolyl isomerization | 1.06E-02 |
| 99 | GO:0010197: polar nucleus fusion | 1.12E-02 |
| 100 | GO:0010182: sugar mediated signaling pathway | 1.12E-02 |
| 101 | GO:0045489: pectin biosynthetic process | 1.12E-02 |
| 102 | GO:0010305: leaf vascular tissue pattern formation | 1.12E-02 |
| 103 | GO:0042752: regulation of circadian rhythm | 1.18E-02 |
| 104 | GO:0009646: response to absence of light | 1.18E-02 |
| 105 | GO:0048544: recognition of pollen | 1.18E-02 |
| 106 | GO:0007166: cell surface receptor signaling pathway | 1.26E-02 |
| 107 | GO:0016032: viral process | 1.36E-02 |
| 108 | GO:0010090: trichome morphogenesis | 1.42E-02 |
| 109 | GO:0006508: proteolysis | 1.46E-02 |
| 110 | GO:0009817: defense response to fungus, incompatible interaction | 2.03E-02 |
| 111 | GO:0009910: negative regulation of flower development | 2.25E-02 |
| 112 | GO:0016051: carbohydrate biosynthetic process | 2.41E-02 |
| 113 | GO:0015979: photosynthesis | 2.42E-02 |
| 114 | GO:0045454: cell redox homeostasis | 2.53E-02 |
| 115 | GO:0030001: metal ion transport | 2.64E-02 |
| 116 | GO:0009640: photomorphogenesis | 2.88E-02 |
| 117 | GO:0006397: mRNA processing | 3.26E-02 |
| 118 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 2 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 3 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 4 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 5 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 6 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 7 | GO:0005504: fatty acid binding | 3.26E-06 |
| 8 | GO:0016279: protein-lysine N-methyltransferase activity | 1.44E-05 |
| 9 | GO:0045430: chalcone isomerase activity | 1.44E-05 |
| 10 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.31E-04 |
| 11 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.31E-04 |
| 12 | GO:0008184: glycogen phosphorylase activity | 1.31E-04 |
| 13 | GO:0050308: sugar-phosphatase activity | 1.31E-04 |
| 14 | GO:0042586: peptide deformylase activity | 1.31E-04 |
| 15 | GO:0052381: tRNA dimethylallyltransferase activity | 1.31E-04 |
| 16 | GO:0004645: phosphorylase activity | 1.31E-04 |
| 17 | GO:0019203: carbohydrate phosphatase activity | 1.31E-04 |
| 18 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.31E-04 |
| 19 | GO:0004817: cysteine-tRNA ligase activity | 3.03E-04 |
| 20 | GO:0030385: ferredoxin:thioredoxin reductase activity | 3.03E-04 |
| 21 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.03E-04 |
| 22 | GO:0008266: poly(U) RNA binding | 3.34E-04 |
| 23 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.54E-04 |
| 24 | GO:0005528: FK506 binding | 4.64E-04 |
| 25 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 4.99E-04 |
| 26 | GO:0004180: carboxypeptidase activity | 4.99E-04 |
| 27 | GO:0070330: aromatase activity | 4.99E-04 |
| 28 | GO:0016992: lipoate synthase activity | 4.99E-04 |
| 29 | GO:0002161: aminoacyl-tRNA editing activity | 4.99E-04 |
| 30 | GO:0004075: biotin carboxylase activity | 4.99E-04 |
| 31 | GO:0016805: dipeptidase activity | 4.99E-04 |
| 32 | GO:0043023: ribosomal large subunit binding | 7.14E-04 |
| 33 | GO:0016851: magnesium chelatase activity | 7.14E-04 |
| 34 | GO:0047134: protein-disulfide reductase activity | 7.82E-04 |
| 35 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 9.47E-04 |
| 36 | GO:0004791: thioredoxin-disulfide reductase activity | 9.69E-04 |
| 37 | GO:0003989: acetyl-CoA carboxylase activity | 1.20E-03 |
| 38 | GO:0018685: alkane 1-monooxygenase activity | 1.20E-03 |
| 39 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.25E-03 |
| 40 | GO:2001070: starch binding | 1.47E-03 |
| 41 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.47E-03 |
| 42 | GO:0004526: ribonuclease P activity | 1.47E-03 |
| 43 | GO:0016208: AMP binding | 1.47E-03 |
| 44 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.76E-03 |
| 45 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.05E-03 |
| 46 | GO:0046914: transition metal ion binding | 2.73E-03 |
| 47 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.94E-03 |
| 48 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.08E-03 |
| 49 | GO:0031072: heat shock protein binding | 5.08E-03 |
| 50 | GO:0005262: calcium channel activity | 5.08E-03 |
| 51 | GO:0015266: protein channel activity | 5.08E-03 |
| 52 | GO:0015035: protein disulfide oxidoreductase activity | 6.54E-03 |
| 53 | GO:0051536: iron-sulfur cluster binding | 6.91E-03 |
| 54 | GO:0004519: endonuclease activity | 6.94E-03 |
| 55 | GO:0043424: protein histidine kinase binding | 7.40E-03 |
| 56 | GO:0016758: transferase activity, transferring hexosyl groups | 7.74E-03 |
| 57 | GO:0004176: ATP-dependent peptidase activity | 7.91E-03 |
| 58 | GO:0033612: receptor serine/threonine kinase binding | 7.91E-03 |
| 59 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 8.42E-03 |
| 60 | GO:0030170: pyridoxal phosphate binding | 8.83E-03 |
| 61 | GO:0008810: cellulase activity | 8.95E-03 |
| 62 | GO:0004812: aminoacyl-tRNA ligase activity | 1.00E-02 |
| 63 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.02E-02 |
| 64 | GO:0042802: identical protein binding | 1.40E-02 |
| 65 | GO:0008483: transaminase activity | 1.55E-02 |
| 66 | GO:0008237: metallopeptidase activity | 1.55E-02 |
| 67 | GO:0003746: translation elongation factor activity | 2.41E-02 |
| 68 | GO:0004185: serine-type carboxypeptidase activity | 2.88E-02 |
| 69 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.05E-02 |
| 70 | GO:0043621: protein self-association | 3.05E-02 |
| 71 | GO:0035091: phosphatidylinositol binding | 3.05E-02 |
| 72 | GO:0003924: GTPase activity | 3.12E-02 |
| 73 | GO:0005198: structural molecule activity | 3.13E-02 |
| 74 | GO:0005524: ATP binding | 3.47E-02 |
| 75 | GO:0003777: microtubule motor activity | 3.83E-02 |
| 76 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.11E-02 |
| 77 | GO:0004650: polygalacturonase activity | 4.29E-02 |
| 78 | GO:0051082: unfolded protein binding | 4.58E-02 |
| 79 | GO:0016746: transferase activity, transferring acyl groups | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 9.44E-29 |
| 2 | GO:0009570: chloroplast stroma | 3.32E-17 |
| 3 | GO:0009941: chloroplast envelope | 6.32E-10 |
| 4 | GO:0009534: chloroplast thylakoid | 1.16E-08 |
| 5 | GO:0009295: nucleoid | 9.18E-08 |
| 6 | GO:0009508: plastid chromosome | 9.97E-08 |
| 7 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.03E-04 |
| 8 | GO:0009528: plastid inner membrane | 4.99E-04 |
| 9 | GO:0010007: magnesium chelatase complex | 4.99E-04 |
| 10 | GO:0009532: plastid stroma | 5.61E-04 |
| 11 | GO:0009527: plastid outer membrane | 9.47E-04 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 1.12E-03 |
| 13 | GO:0010319: stromule | 1.41E-03 |
| 14 | GO:0030529: intracellular ribonucleoprotein complex | 1.58E-03 |
| 15 | GO:0009707: chloroplast outer membrane | 2.05E-03 |
| 16 | GO:0009533: chloroplast stromal thylakoid | 2.06E-03 |
| 17 | GO:0009535: chloroplast thylakoid membrane | 2.45E-03 |
| 18 | GO:0009536: plastid | 2.95E-03 |
| 19 | GO:0031969: chloroplast membrane | 3.81E-03 |
| 20 | GO:0043234: protein complex | 6.43E-03 |
| 21 | GO:0042651: thylakoid membrane | 7.40E-03 |
| 22 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 9.49E-03 |
| 23 | GO:0005778: peroxisomal membrane | 1.55E-02 |
| 24 | GO:0009579: thylakoid | 1.62E-02 |
| 25 | GO:0031977: thylakoid lumen | 2.72E-02 |
| 26 | GO:0043231: intracellular membrane-bounded organelle | 3.44E-02 |