co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G20190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0001778: plasma membrane repair	0.00E+00
4	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
5	GO:0006573: valine metabolic process	0.00E+00
6	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
7	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
8	GO:0017038: protein import	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
12	GO:0070125: mitochondrial translational elongation	0.00E+00
13	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
14	GO:0070979: protein K11-linked ubiquitination	0.00E+00
15	GO:1900871: chloroplast mRNA modification	2.75E-06
16	GO:0018026: peptidyl-lysine monomethylation	2.75E-06
17	GO:0046739: transport of virus in multicellular host	2.27E-05
18	GO:0010027: thylakoid membrane organization	3.22E-05
19	GO:0042793: transcription from plastid promoter	9.62E-05
20	GO:1901259: chloroplast rRNA processing	1.32E-04
21	GO:0009451: RNA modification	1.54E-04
22	GO:0009416: response to light stimulus	1.56E-04
23	GO:0006662: glycerol ether metabolic process	1.95E-04
24	GO:0048363: mucilage pectin metabolic process	2.43E-04
25	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.43E-04
26	GO:0009090: homoserine biosynthetic process	2.43E-04
27	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	2.43E-04
28	GO:0043266: regulation of potassium ion transport	2.43E-04
29	GO:0010063: positive regulation of trichoblast fate specification	2.43E-04
30	GO:0006551: leucine metabolic process	2.43E-04
31	GO:0043686: co-translational protein modification	2.43E-04
32	GO:2000021: regulation of ion homeostasis	2.43E-04
33	GO:1902458: positive regulation of stomatal opening	2.43E-04
34	GO:0016032: viral process	2.85E-04
35	GO:0009658: chloroplast organization	3.46E-04
36	GO:0009098: leucine biosynthetic process	3.94E-04
37	GO:1900865: chloroplast RNA modification	3.94E-04
38	GO:0031425: chloroplast RNA processing	3.94E-04
39	GO:0015995: chlorophyll biosynthetic process	5.26E-04
40	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.39E-04
41	GO:0030187: melatonin biosynthetic process	5.39E-04
42	GO:0006432: phenylalanyl-tRNA aminoacylation	5.39E-04
43	GO:0071668: plant-type cell wall assembly	5.39E-04
44	GO:1904143: positive regulation of carotenoid biosynthetic process	5.39E-04
45	GO:0046740: transport of virus in host, cell to cell	5.39E-04
46	GO:0031648: protein destabilization	5.39E-04
47	GO:0001682: tRNA 5'-leader removal	5.39E-04
48	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.39E-04
49	GO:0006568: tryptophan metabolic process	5.39E-04
50	GO:0045454: cell redox homeostasis	7.06E-04
51	GO:0034599: cellular response to oxidative stress	8.53E-04
52	GO:0033591: response to L-ascorbic acid	8.75E-04
53	GO:0009405: pathogenesis	8.75E-04
54	GO:0034051: negative regulation of plant-type hypersensitive response	8.75E-04
55	GO:0031145: anaphase-promoting complex-dependent catabolic process	8.75E-04
56	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.25E-03
57	GO:0032456: endocytic recycling	1.25E-03
58	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.25E-03
59	GO:0010306: rhamnogalacturonan II biosynthetic process	1.25E-03
60	GO:0006612: protein targeting to membrane	1.25E-03
61	GO:0016556: mRNA modification	1.25E-03
62	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.25E-03
63	GO:0009067: aspartate family amino acid biosynthetic process	1.25E-03
64	GO:0010071: root meristem specification	1.25E-03
65	GO:0009102: biotin biosynthetic process	1.25E-03
66	GO:0042274: ribosomal small subunit biogenesis	1.67E-03
67	GO:0006221: pyrimidine nucleotide biosynthetic process	1.67E-03
68	GO:0008295: spermidine biosynthetic process	1.67E-03
69	GO:0010109: regulation of photosynthesis	1.67E-03
70	GO:0008033: tRNA processing	1.94E-03
71	GO:0010305: leaf vascular tissue pattern formation	2.09E-03
72	GO:0032876: negative regulation of DNA endoreduplication	2.13E-03
73	GO:0032543: mitochondrial translation	2.13E-03
74	GO:0045038: protein import into chloroplast thylakoid membrane	2.13E-03
75	GO:0031365: N-terminal protein amino acid modification	2.13E-03
76	GO:0016123: xanthophyll biosynthetic process	2.13E-03
77	GO:0009646: response to absence of light	2.24E-03
78	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.62E-03
79	GO:0016554: cytidine to uridine editing	2.62E-03
80	GO:0032973: amino acid export	2.62E-03
81	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.62E-03
82	GO:0042372: phylloquinone biosynthetic process	3.15E-03
83	GO:0009612: response to mechanical stimulus	3.15E-03
84	GO:0009082: branched-chain amino acid biosynthetic process	3.15E-03
85	GO:0017148: negative regulation of translation	3.15E-03
86	GO:0048280: vesicle fusion with Golgi apparatus	3.15E-03
87	GO:0009099: valine biosynthetic process	3.15E-03
88	GO:0009088: threonine biosynthetic process	3.15E-03
89	GO:0080086: stamen filament development	3.15E-03
90	GO:0043090: amino acid import	3.72E-03
91	GO:0048437: floral organ development	3.72E-03
92	GO:0046620: regulation of organ growth	4.31E-03
93	GO:0006605: protein targeting	4.31E-03
94	GO:0032875: regulation of DNA endoreduplication	4.31E-03
95	GO:2000070: regulation of response to water deprivation	4.31E-03
96	GO:0000105: histidine biosynthetic process	4.31E-03
97	GO:0009231: riboflavin biosynthetic process	4.31E-03
98	GO:0006397: mRNA processing	4.77E-03
99	GO:0015996: chlorophyll catabolic process	4.93E-03
100	GO:0007186: G-protein coupled receptor signaling pathway	4.93E-03
101	GO:0010497: plasmodesmata-mediated intercellular transport	4.93E-03
102	GO:0009657: plastid organization	4.93E-03
103	GO:0009097: isoleucine biosynthetic process	4.93E-03
104	GO:0032544: plastid translation	4.93E-03
105	GO:0009793: embryo development ending in seed dormancy	5.09E-03
106	GO:0046685: response to arsenic-containing substance	5.59E-03
107	GO:0051865: protein autoubiquitination	5.59E-03
108	GO:0048507: meristem development	5.59E-03
109	GO:0080144: amino acid homeostasis	5.59E-03
110	GO:0046916: cellular transition metal ion homeostasis	5.59E-03
111	GO:0000373: Group II intron splicing	5.59E-03
112	GO:0000902: cell morphogenesis	5.59E-03
113	GO:0007166: cell surface receptor signaling pathway	5.97E-03
114	GO:0006779: porphyrin-containing compound biosynthetic process	6.27E-03
115	GO:0009086: methionine biosynthetic process	6.27E-03
116	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.27E-03
117	GO:0055114: oxidation-reduction process	6.71E-03
118	GO:0006896: Golgi to vacuole transport	6.99E-03
119	GO:0006782: protoporphyrinogen IX biosynthetic process	6.99E-03
120	GO:0009773: photosynthetic electron transport in photosystem I	7.73E-03
121	GO:0009089: lysine biosynthetic process via diaminopimelate	7.73E-03
122	GO:0009073: aromatic amino acid family biosynthetic process	7.73E-03
123	GO:0043085: positive regulation of catalytic activity	7.73E-03
124	GO:0005983: starch catabolic process	8.49E-03
125	GO:0045037: protein import into chloroplast stroma	8.49E-03
126	GO:0009691: cytokinin biosynthetic process	9.29E-03
127	GO:0010628: positive regulation of gene expression	9.29E-03
128	GO:0009718: anthocyanin-containing compound biosynthetic process	9.29E-03
129	GO:0010207: photosystem II assembly	1.01E-02
130	GO:0019853: L-ascorbic acid biosynthetic process	1.10E-02
131	GO:0010030: positive regulation of seed germination	1.10E-02
132	GO:0000162: tryptophan biosynthetic process	1.18E-02
133	GO:0008299: isoprenoid biosynthetic process	1.37E-02
134	GO:0006418: tRNA aminoacylation for protein translation	1.37E-02
135	GO:0048511: rhythmic process	1.46E-02
136	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.56E-02
137	GO:0009742: brassinosteroid mediated signaling pathway	1.62E-02
138	GO:0006012: galactose metabolic process	1.66E-02
139	GO:0042127: regulation of cell proliferation	1.76E-02
140	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.86E-02
141	GO:0042147: retrograde transport, endosome to Golgi	1.86E-02
142	GO:0042631: cellular response to water deprivation	1.97E-02
143	GO:0000271: polysaccharide biosynthetic process	1.97E-02
144	GO:0010087: phloem or xylem histogenesis	1.97E-02
145	GO:0045489: pectin biosynthetic process	2.07E-02
146	GO:0010182: sugar mediated signaling pathway	2.07E-02
147	GO:0048868: pollen tube development	2.07E-02
148	GO:0009741: response to brassinosteroid	2.07E-02
149	GO:0042752: regulation of circadian rhythm	2.18E-02
150	GO:0009790: embryo development	2.23E-02
151	GO:0006623: protein targeting to vacuole	2.29E-02
152	GO:0006891: intra-Golgi vesicle-mediated transport	2.41E-02
153	GO:0010583: response to cyclopentenone	2.52E-02
154	GO:0032502: developmental process	2.52E-02
155	GO:0010090: trichome morphogenesis	2.64E-02
156	GO:1901657: glycosyl compound metabolic process	2.64E-02
157	GO:0006464: cellular protein modification process	2.76E-02
158	GO:0009615: response to virus	3.13E-02
159	GO:0006888: ER to Golgi vesicle-mediated transport	3.52E-02
160	GO:0009733: response to auxin	3.62E-02
161	GO:0048481: plant ovule development	3.78E-02
162	GO:0009910: negative regulation of flower development	4.19E-02
163	GO:0045087: innate immune response	4.48E-02
164	GO:0016051: carbohydrate biosynthetic process	4.48E-02
165	GO:0030001: metal ion transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0004823: leucine-tRNA ligase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0004148: dihydrolipoyl dehydrogenase activity	1.00E-05
10	GO:0003723: RNA binding	3.04E-05
11	GO:0016279: protein-lysine N-methyltransferase activity	4.12E-05
12	GO:0047134: protein-disulfide reductase activity	1.56E-04
13	GO:0004791: thioredoxin-disulfide reductase activity	2.16E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.43E-04
15	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.43E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.43E-04
17	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.43E-04
18	GO:0050308: sugar-phosphatase activity	2.43E-04
19	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	2.43E-04
20	GO:0042586: peptide deformylase activity	2.43E-04
21	GO:0052381: tRNA dimethylallyltransferase activity	2.43E-04
22	GO:0019203: carbohydrate phosphatase activity	2.43E-04
23	GO:0003984: acetolactate synthase activity	2.43E-04
24	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.43E-04
25	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.43E-04
26	GO:0004519: endonuclease activity	2.55E-04
27	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.11E-04
28	GO:0004766: spermidine synthase activity	5.39E-04
29	GO:0008805: carbon-monoxide oxygenase activity	5.39E-04
30	GO:0004826: phenylalanine-tRNA ligase activity	5.39E-04
31	GO:0004412: homoserine dehydrogenase activity	5.39E-04
32	GO:1901981: phosphatidylinositol phosphate binding	5.39E-04
33	GO:0003862: 3-isopropylmalate dehydrogenase activity	5.39E-04
34	GO:0017118: lipoyltransferase activity	5.39E-04
35	GO:0003852: 2-isopropylmalate synthase activity	5.39E-04
36	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.39E-04
37	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.75E-04
38	GO:0004180: carboxypeptidase activity	8.75E-04
39	GO:0003913: DNA photolyase activity	8.75E-04
40	GO:0002161: aminoacyl-tRNA editing activity	8.75E-04
41	GO:0016805: dipeptidase activity	8.75E-04
42	GO:0070402: NADPH binding	8.75E-04
43	GO:0004072: aspartate kinase activity	1.25E-03
44	GO:0009041: uridylate kinase activity	1.25E-03
45	GO:0016851: magnesium chelatase activity	1.25E-03
46	GO:0043023: ribosomal large subunit binding	1.25E-03
47	GO:0008080: N-acetyltransferase activity	2.09E-03
48	GO:0015035: protein disulfide oxidoreductase activity	2.61E-03
49	GO:0004526: ribonuclease P activity	2.62E-03
50	GO:0016208: AMP binding	2.62E-03
51	GO:2001070: starch binding	2.62E-03
52	GO:0008195: phosphatidate phosphatase activity	3.15E-03
53	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.15E-03
54	GO:0016597: amino acid binding	3.50E-03
55	GO:0004033: aldo-keto reductase (NADP) activity	4.31E-03
56	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.60E-03
57	GO:0046914: transition metal ion binding	4.93E-03
58	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.59E-03
59	GO:0003746: translation elongation factor activity	6.13E-03
60	GO:0008047: enzyme activator activity	6.99E-03
61	GO:0000049: tRNA binding	8.49E-03
62	GO:0000287: magnesium ion binding	8.56E-03
63	GO:0009982: pseudouridine synthase activity	9.29E-03
64	GO:0031072: heat shock protein binding	9.29E-03
65	GO:0008266: poly(U) RNA binding	1.01E-02
66	GO:0016787: hydrolase activity	1.26E-02
67	GO:0005528: FK506 binding	1.27E-02
68	GO:0004176: ATP-dependent peptidase activity	1.46E-02
69	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.56E-02
70	GO:0008026: ATP-dependent helicase activity	1.62E-02
71	GO:0004812: aminoacyl-tRNA ligase activity	1.86E-02
72	GO:0019843: rRNA binding	1.91E-02
73	GO:0005524: ATP binding	2.02E-02
74	GO:0016853: isomerase activity	2.18E-02
75	GO:0005525: GTP binding	2.25E-02
76	GO:0008483: transaminase activity	2.88E-02
77	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.88E-02
78	GO:0008237: metallopeptidase activity	2.88E-02
79	GO:0102483: scopolin beta-glucosidase activity	3.52E-02
80	GO:0004721: phosphoprotein phosphatase activity	3.52E-02
81	GO:0015238: drug transmembrane transporter activity	3.92E-02
82	GO:0050897: cobalt ion binding	4.19E-02
83	GO:0030145: manganese ion binding	4.19E-02
84	GO:0003993: acid phosphatase activity	4.62E-02
85	GO:0050660: flavin adenine dinucleotide binding	4.70E-02
86	GO:0008422: beta-glucosidase activity	4.76E-02
87	GO:0000149: SNARE binding	4.76E-02
88	GO:0051539: 4 iron, 4 sulfur cluster binding	4.91E-02
89	GO:0050661: NADP binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0009507: chloroplast	8.04E-30
3	GO:0009570: chloroplast stroma	9.20E-18
4	GO:0009508: plastid chromosome	7.08E-07
5	GO:0009295: nucleoid	9.48E-07
6	GO:0009941: chloroplast envelope	1.54E-04
7	GO:0032541: cortical endoplasmic reticulum	2.43E-04
8	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.39E-04
9	GO:0000778: condensed nuclear chromosome kinetochore	5.39E-04
10	GO:0009528: plastid inner membrane	8.75E-04
11	GO:0010007: magnesium chelatase complex	8.75E-04
12	GO:0009535: chloroplast thylakoid membrane	1.58E-03
13	GO:0009898: cytoplasmic side of plasma membrane	1.67E-03
14	GO:0009527: plastid outer membrane	1.67E-03
15	GO:0031969: chloroplast membrane	2.47E-03
16	GO:0009706: chloroplast inner membrane	2.51E-03
17	GO:0030529: intracellular ribonucleoprotein complex	3.71E-03
18	GO:0012507: ER to Golgi transport vesicle membrane	4.31E-03
19	GO:0009501: amyloplast	4.31E-03
20	GO:0005759: mitochondrial matrix	4.46E-03
21	GO:0009707: chloroplast outer membrane	4.83E-03
22	GO:0043231: intracellular membrane-bounded organelle	5.19E-03
23	GO:0005680: anaphase-promoting complex	5.59E-03
24	GO:0016604: nuclear body	6.27E-03
25	GO:0005884: actin filament	7.73E-03
26	GO:0009579: thylakoid	1.40E-02
27	GO:0009534: chloroplast thylakoid	1.42E-02
28	GO:0009532: plastid stroma	1.46E-02
29	GO:0009705: plant-type vacuole membrane	2.64E-02
30	GO:0005778: peroxisomal membrane	2.88E-02
31	GO:0010319: stromule	2.88E-02
32	GO:0009536: plastid	4.11E-02