co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G20140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0006573: valine metabolic process	0.00E+00
4	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0031222: arabinan catabolic process	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
9	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
10	GO:0017038: protein import	0.00E+00
11	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
12	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
13	GO:0007638: mechanosensory behavior	0.00E+00
14	GO:0009658: chloroplast organization	7.59E-06
15	GO:1900871: chloroplast mRNA modification	1.67E-05
16	GO:0010027: thylakoid membrane organization	4.18E-05
17	GO:0046620: regulation of organ growth	4.72E-05
18	GO:0009416: response to light stimulus	1.07E-04
19	GO:1900865: chloroplast RNA modification	1.15E-04
20	GO:0040008: regulation of growth	4.16E-04
21	GO:0016554: cytidine to uridine editing	4.18E-04
22	GO:0042793: transcription from plastid promoter	4.18E-04
23	GO:0009099: valine biosynthetic process	5.54E-04
24	GO:0030488: tRNA methylation	5.54E-04
25	GO:0009082: branched-chain amino acid biosynthetic process	5.54E-04
26	GO:0043266: regulation of potassium ion transport	6.22E-04
27	GO:0046520: sphingoid biosynthetic process	6.22E-04
28	GO:0010063: positive regulation of trichoblast fate specification	6.22E-04
29	GO:0010480: microsporocyte differentiation	6.22E-04
30	GO:0006551: leucine metabolic process	6.22E-04
31	GO:2000021: regulation of ion homeostasis	6.22E-04
32	GO:1902458: positive regulation of stomatal opening	6.22E-04
33	GO:0015904: tetracycline transport	6.22E-04
34	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	6.22E-04
35	GO:0006438: valyl-tRNA aminoacylation	6.22E-04
36	GO:0048437: floral organ development	7.10E-04
37	GO:2000070: regulation of response to water deprivation	8.83E-04
38	GO:0009097: isoleucine biosynthetic process	1.07E-03
39	GO:0009657: plastid organization	1.07E-03
40	GO:0010305: leaf vascular tissue pattern formation	1.17E-03
41	GO:0010182: sugar mediated signaling pathway	1.17E-03
42	GO:0006432: phenylalanyl-tRNA aminoacylation	1.34E-03
43	GO:0018026: peptidyl-lysine monomethylation	1.34E-03
44	GO:0071497: cellular response to freezing	1.34E-03
45	GO:1904143: positive regulation of carotenoid biosynthetic process	1.34E-03
46	GO:0080009: mRNA methylation	1.34E-03
47	GO:0009786: regulation of asymmetric cell division	1.34E-03
48	GO:0031648: protein destabilization	1.34E-03
49	GO:0001682: tRNA 5'-leader removal	1.34E-03
50	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.34E-03
51	GO:0006568: tryptophan metabolic process	1.34E-03
52	GO:2000123: positive regulation of stomatal complex development	1.34E-03
53	GO:0010024: phytochromobilin biosynthetic process	1.34E-03
54	GO:0060359: response to ammonium ion	1.34E-03
55	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.34E-03
56	GO:0009790: embryo development	1.43E-03
57	GO:0009098: leucine biosynthetic process	1.52E-03
58	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.81E-03
59	GO:0009451: RNA modification	2.00E-03
60	GO:0006788: heme oxidation	2.20E-03
61	GO:0090153: regulation of sphingolipid biosynthetic process	2.20E-03
62	GO:0043157: response to cation stress	2.20E-03
63	GO:0071398: cellular response to fatty acid	2.20E-03
64	GO:0033591: response to L-ascorbic acid	2.20E-03
65	GO:0031022: nuclear migration along microfilament	2.20E-03
66	GO:0010207: photosystem II assembly	3.03E-03
67	GO:0010020: chloroplast fission	3.03E-03
68	GO:0015995: chlorophyll biosynthetic process	3.05E-03
69	GO:0031048: chromatin silencing by small RNA	3.20E-03
70	GO:0016556: mRNA modification	3.20E-03
71	GO:0043572: plastid fission	3.20E-03
72	GO:0090308: regulation of methylation-dependent chromatin silencing	3.20E-03
73	GO:0010371: regulation of gibberellin biosynthetic process	3.20E-03
74	GO:0010071: root meristem specification	3.20E-03
75	GO:0051513: regulation of monopolar cell growth	3.20E-03
76	GO:0007231: osmosensory signaling pathway	3.20E-03
77	GO:0009102: biotin biosynthetic process	3.20E-03
78	GO:0019048: modulation by virus of host morphology or physiology	3.20E-03
79	GO:0010306: rhamnogalacturonan II biosynthetic process	3.20E-03
80	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.20E-03
81	GO:0009733: response to auxin	3.41E-03
82	GO:0009742: brassinosteroid mediated signaling pathway	3.69E-03
83	GO:0005992: trehalose biosynthetic process	4.21E-03
84	GO:0051567: histone H3-K9 methylation	4.32E-03
85	GO:0008295: spermidine biosynthetic process	4.32E-03
86	GO:0009755: hormone-mediated signaling pathway	4.32E-03
87	GO:1901141: regulation of lignin biosynthetic process	4.32E-03
88	GO:0010109: regulation of photosynthesis	4.32E-03
89	GO:0042274: ribosomal small subunit biogenesis	4.32E-03
90	GO:0033500: carbohydrate homeostasis	4.32E-03
91	GO:0006221: pyrimidine nucleotide biosynthetic process	4.32E-03
92	GO:2000038: regulation of stomatal complex development	4.32E-03
93	GO:0009904: chloroplast accumulation movement	5.55E-03
94	GO:0045038: protein import into chloroplast thylakoid membrane	5.55E-03
95	GO:0048497: maintenance of floral organ identity	5.55E-03
96	GO:0016123: xanthophyll biosynthetic process	5.55E-03
97	GO:0010438: cellular response to sulfur starvation	5.55E-03
98	GO:0010375: stomatal complex patterning	5.55E-03
99	GO:0080110: sporopollenin biosynthetic process	5.55E-03
100	GO:0016131: brassinosteroid metabolic process	5.55E-03
101	GO:0009926: auxin polar transport	6.52E-03
102	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.88E-03
103	GO:0016458: gene silencing	6.88E-03
104	GO:0010405: arabinogalactan protein metabolic process	6.88E-03
105	GO:0009959: negative gravitropism	6.88E-03
106	GO:0009913: epidermal cell differentiation	6.88E-03
107	GO:1902456: regulation of stomatal opening	6.88E-03
108	GO:0010190: cytochrome b6f complex assembly	6.88E-03
109	GO:0009734: auxin-activated signaling pathway	7.22E-03
110	GO:0008033: tRNA processing	7.82E-03
111	GO:0048280: vesicle fusion with Golgi apparatus	8.32E-03
112	GO:2000033: regulation of seed dormancy process	8.32E-03
113	GO:1901259: chloroplast rRNA processing	8.32E-03
114	GO:0031930: mitochondria-nucleus signaling pathway	8.32E-03
115	GO:0009903: chloroplast avoidance movement	8.32E-03
116	GO:0080086: stamen filament development	8.32E-03
117	GO:0009648: photoperiodism	8.32E-03
118	GO:0042372: phylloquinone biosynthetic process	8.32E-03
119	GO:0017148: negative regulation of translation	8.32E-03
120	GO:0006662: glycerol ether metabolic process	8.43E-03
121	GO:0048868: pollen tube development	8.43E-03
122	GO:0009741: response to brassinosteroid	8.43E-03
123	GO:0007018: microtubule-based movement	9.08E-03
124	GO:0009646: response to absence of light	9.08E-03
125	GO:0007166: cell surface receptor signaling pathway	9.56E-03
126	GO:0010444: guard mother cell differentiation	9.86E-03
127	GO:0030307: positive regulation of cell growth	9.86E-03
128	GO:0010098: suspensor development	9.86E-03
129	GO:0032502: developmental process	1.12E-02
130	GO:0010583: response to cyclopentenone	1.12E-02
131	GO:0006605: protein targeting	1.15E-02
132	GO:0070413: trehalose metabolism in response to stress	1.15E-02
133	GO:0000105: histidine biosynthetic process	1.15E-02
134	GO:0048564: photosystem I assembly	1.15E-02
135	GO:0010439: regulation of glucosinolate biosynthetic process	1.15E-02
136	GO:0009819: drought recovery	1.15E-02
137	GO:0032544: plastid translation	1.32E-02
138	GO:0015996: chlorophyll catabolic process	1.32E-02
139	GO:0007186: G-protein coupled receptor signaling pathway	1.32E-02
140	GO:0051607: defense response to virus	1.43E-02
141	GO:0048507: meristem development	1.50E-02
142	GO:0000373: Group II intron splicing	1.50E-02
143	GO:0000902: cell morphogenesis	1.50E-02
144	GO:0051865: protein autoubiquitination	1.50E-02
145	GO:0031425: chloroplast RNA processing	1.69E-02
146	GO:0009638: phototropism	1.69E-02
147	GO:0006779: porphyrin-containing compound biosynthetic process	1.69E-02
148	GO:0030422: production of siRNA involved in RNA interference	1.89E-02
149	GO:0048829: root cap development	1.89E-02
150	GO:0009641: shade avoidance	1.89E-02
151	GO:0031627: telomeric loop formation	1.89E-02
152	GO:0010162: seed dormancy process	1.89E-02
153	GO:0016311: dephosphorylation	1.89E-02
154	GO:0009299: mRNA transcription	1.89E-02
155	GO:0006896: Golgi to vacuole transport	1.89E-02
156	GO:0006782: protoporphyrinogen IX biosynthetic process	1.89E-02
157	GO:0009793: embryo development ending in seed dormancy	2.07E-02
158	GO:0006415: translational termination	2.10E-02
159	GO:0048229: gametophyte development	2.10E-02
160	GO:0010216: maintenance of DNA methylation	2.10E-02
161	GO:0006816: calcium ion transport	2.10E-02
162	GO:0009773: photosynthetic electron transport in photosystem I	2.10E-02
163	GO:0009073: aromatic amino acid family biosynthetic process	2.10E-02
164	GO:0043085: positive regulation of catalytic activity	2.10E-02
165	GO:0009682: induced systemic resistance	2.10E-02
166	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.31E-02
167	GO:0045037: protein import into chloroplast stroma	2.31E-02
168	GO:0005983: starch catabolic process	2.31E-02
169	GO:0010628: positive regulation of gene expression	2.53E-02
170	GO:0009691: cytokinin biosynthetic process	2.53E-02
171	GO:0050826: response to freezing	2.53E-02
172	GO:0009718: anthocyanin-containing compound biosynthetic process	2.53E-02
173	GO:0010075: regulation of meristem growth	2.53E-02
174	GO:0009725: response to hormone	2.53E-02
175	GO:0010588: cotyledon vascular tissue pattern formation	2.53E-02
176	GO:2000012: regulation of auxin polar transport	2.53E-02
177	GO:0034599: cellular response to oxidative stress	2.64E-02
178	GO:0009934: regulation of meristem structural organization	2.76E-02
179	GO:0090351: seedling development	2.99E-02
180	GO:0010030: positive regulation of seed germination	2.99E-02
181	GO:0070588: calcium ion transmembrane transport	2.99E-02
182	GO:0006631: fatty acid metabolic process	3.00E-02
183	GO:0006468: protein phosphorylation	3.08E-02
184	GO:0006071: glycerol metabolic process	3.23E-02
185	GO:0000162: tryptophan biosynthetic process	3.23E-02
186	GO:0009640: photomorphogenesis	3.25E-02
187	GO:0051017: actin filament bundle assembly	3.48E-02
188	GO:0016042: lipid catabolic process	3.56E-02
189	GO:0006418: tRNA aminoacylation for protein translation	3.73E-02
190	GO:0048511: rhythmic process	3.99E-02
191	GO:0010431: seed maturation	3.99E-02
192	GO:0006306: DNA methylation	3.99E-02
193	GO:0030245: cellulose catabolic process	4.26E-02
194	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.26E-02
195	GO:0009625: response to insect	4.53E-02
196	GO:0010082: regulation of root meristem growth	4.53E-02
197	GO:0009693: ethylene biosynthetic process	4.53E-02
198	GO:0010584: pollen exine formation	4.80E-02
199	GO:0042127: regulation of cell proliferation	4.80E-02
200	GO:0009909: regulation of flower development	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	1.16E-04
8	GO:0003723: RNA binding	4.95E-04
9	GO:0008158: hedgehog receptor activity	6.22E-04
10	GO:0008395: steroid hydroxylase activity	6.22E-04
11	GO:0005080: protein kinase C binding	6.22E-04
12	GO:0052381: tRNA dimethylallyltransferase activity	6.22E-04
13	GO:0004832: valine-tRNA ligase activity	6.22E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	6.22E-04
15	GO:0000170: sphingosine hydroxylase activity	6.22E-04
16	GO:0050139: nicotinate-N-glucosyltransferase activity	6.22E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	6.22E-04
18	GO:0005227: calcium activated cation channel activity	6.22E-04
19	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.22E-04
20	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	6.22E-04
21	GO:0080042: ADP-glucose pyrophosphohydrolase activity	6.22E-04
22	GO:0050308: sugar-phosphatase activity	6.22E-04
23	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.22E-04
24	GO:0019203: carbohydrate phosphatase activity	6.22E-04
25	GO:0003984: acetolactate synthase activity	6.22E-04
26	GO:0004176: ATP-dependent peptidase activity	6.27E-04
27	GO:0004519: endonuclease activity	1.31E-03
28	GO:0004826: phenylalanine-tRNA ligase activity	1.34E-03
29	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.34E-03
30	GO:0017118: lipoyltransferase activity	1.34E-03
31	GO:0003852: 2-isopropylmalate synthase activity	1.34E-03
32	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.34E-03
33	GO:0043425: bHLH transcription factor binding	1.34E-03
34	GO:0004766: spermidine synthase activity	1.34E-03
35	GO:0008805: carbon-monoxide oxygenase activity	1.34E-03
36	GO:0042284: sphingolipid delta-4 desaturase activity	1.34E-03
37	GO:0008493: tetracycline transporter activity	1.34E-03
38	GO:0004805: trehalose-phosphatase activity	1.77E-03
39	GO:0008237: metallopeptidase activity	2.13E-03
40	GO:0016805: dipeptidase activity	2.20E-03
41	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.20E-03
42	GO:0004180: carboxypeptidase activity	2.20E-03
43	GO:0003913: DNA photolyase activity	2.20E-03
44	GO:0009982: pseudouridine synthase activity	2.68E-03
45	GO:0052656: L-isoleucine transaminase activity	3.20E-03
46	GO:0035197: siRNA binding	3.20E-03
47	GO:0016851: magnesium chelatase activity	3.20E-03
48	GO:0043023: ribosomal large subunit binding	3.20E-03
49	GO:0052654: L-leucine transaminase activity	3.20E-03
50	GO:0052655: L-valine transaminase activity	3.20E-03
51	GO:0016149: translation release factor activity, codon specific	3.20E-03
52	GO:0009041: uridylate kinase activity	3.20E-03
53	GO:0004222: metalloendopeptidase activity	3.94E-03
54	GO:0005528: FK506 binding	4.21E-03
55	GO:0019199: transmembrane receptor protein kinase activity	4.32E-03
56	GO:0004392: heme oxygenase (decyclizing) activity	4.32E-03
57	GO:0046556: alpha-L-arabinofuranosidase activity	4.32E-03
58	GO:0016279: protein-lysine N-methyltransferase activity	4.32E-03
59	GO:0004084: branched-chain-amino-acid transaminase activity	4.32E-03
60	GO:2001070: starch binding	6.88E-03
61	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.88E-03
62	GO:0004526: ribonuclease P activity	6.88E-03
63	GO:0004709: MAP kinase kinase kinase activity	6.88E-03
64	GO:0016208: AMP binding	6.88E-03
65	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.00E-03
66	GO:0047134: protein-disulfide reductase activity	7.22E-03
67	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	8.32E-03
68	GO:0016832: aldehyde-lyase activity	8.32E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	9.08E-03
70	GO:0003777: microtubule motor activity	1.09E-02
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.19E-02
72	GO:0051015: actin filament binding	1.19E-02
73	GO:0008173: RNA methyltransferase activity	1.32E-02
74	GO:0016597: amino acid binding	1.43E-02
75	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.50E-02
76	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.50E-02
77	GO:0003747: translation release factor activity	1.50E-02
78	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.50E-02
79	GO:0015035: protein disulfide oxidoreductase activity	1.56E-02
80	GO:0030247: polysaccharide binding	1.79E-02
81	GO:0008047: enzyme activator activity	1.89E-02
82	GO:0015020: glucuronosyltransferase activity	1.89E-02
83	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.93E-02
84	GO:0003691: double-stranded telomeric DNA binding	2.10E-02
85	GO:0000049: tRNA binding	2.31E-02
86	GO:0004521: endoribonuclease activity	2.31E-02
87	GO:0003697: single-stranded DNA binding	2.52E-02
88	GO:0031072: heat shock protein binding	2.53E-02
89	GO:0005262: calcium channel activity	2.53E-02
90	GO:0016887: ATPase activity	2.54E-02
91	GO:0003993: acid phosphatase activity	2.64E-02
92	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.76E-02
93	GO:0008266: poly(U) RNA binding	2.76E-02
94	GO:0004871: signal transducer activity	2.92E-02
95	GO:0008146: sulfotransferase activity	2.99E-02
96	GO:0003712: transcription cofactor activity	2.99E-02
97	GO:0051536: iron-sulfur cluster binding	3.48E-02
98	GO:0031418: L-ascorbic acid binding	3.48E-02
99	GO:0005524: ATP binding	3.49E-02
100	GO:0043621: protein self-association	3.52E-02
101	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.79E-02
102	GO:0033612: receptor serine/threonine kinase binding	3.99E-02
103	GO:0008810: cellulase activity	4.53E-02
104	GO:0003690: double-stranded DNA binding	4.53E-02
105	GO:0003727: single-stranded RNA binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009507: chloroplast	9.55E-16
4	GO:0009508: plastid chromosome	1.45E-05
5	GO:0009570: chloroplast stroma	3.07E-05
6	GO:0009295: nucleoid	3.17E-05
7	GO:0009941: chloroplast envelope	6.61E-04
8	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.34E-03
9	GO:0031357: integral component of chloroplast inner membrane	1.34E-03
10	GO:0009534: chloroplast thylakoid	1.98E-03
11	GO:0030139: endocytic vesicle	2.20E-03
12	GO:0009528: plastid inner membrane	2.20E-03
13	GO:0019897: extrinsic component of plasma membrane	2.20E-03
14	GO:0010007: magnesium chelatase complex	2.20E-03
15	GO:0005719: nuclear euchromatin	3.20E-03
16	GO:0032585: multivesicular body membrane	3.20E-03
17	GO:0030663: COPI-coated vesicle membrane	4.32E-03
18	GO:0009527: plastid outer membrane	4.32E-03
19	GO:0015629: actin cytoskeleton	6.12E-03
20	GO:0005871: kinesin complex	7.22E-03
21	GO:0005856: cytoskeleton	7.57E-03
22	GO:0005886: plasma membrane	9.66E-03
23	GO:0009986: cell surface	9.86E-03
24	GO:0012507: ER to Golgi transport vesicle membrane	1.15E-02
25	GO:0009501: amyloplast	1.15E-02
26	GO:0000783: nuclear telomere cap complex	1.32E-02
27	GO:0043231: intracellular membrane-bounded organelle	1.42E-02
28	GO:0005720: nuclear heterochromatin	1.50E-02
29	GO:0009706: chloroplast inner membrane	1.50E-02
30	GO:0030529: intracellular ribonucleoprotein complex	1.52E-02
31	GO:0015030: Cajal body	1.69E-02
32	GO:0000418: DNA-directed RNA polymerase IV complex	1.89E-02
33	GO:0030125: clathrin vesicle coat	1.89E-02
34	GO:0009535: chloroplast thylakoid membrane	1.92E-02
35	GO:0009543: chloroplast thylakoid lumen	2.00E-02
36	GO:0031969: chloroplast membrane	2.09E-02
37	GO:0005884: actin filament	2.10E-02
38	GO:0005578: proteinaceous extracellular matrix	2.53E-02
39	GO:0009536: plastid	2.66E-02
40	GO:0030095: chloroplast photosystem II	2.76E-02
41	GO:0009654: photosystem II oxygen evolving complex	3.73E-02
42	GO:0042651: thylakoid membrane	3.73E-02
43	GO:0009532: plastid stroma	3.99E-02
44	GO:0046658: anchored component of plasma membrane	4.24E-02