co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G19530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
4	GO:0034757: negative regulation of iron ion transport	2.27E-04
5	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.27E-04
6	GO:0006285: base-excision repair, AP site formation	2.27E-04
7	GO:0000373: Group II intron splicing	3.00E-04
8	GO:0010271: regulation of chlorophyll catabolic process	5.05E-04
9	GO:0031648: protein destabilization	5.05E-04
10	GO:0040008: regulation of growth	7.40E-04
11	GO:0071398: cellular response to fatty acid	8.21E-04
12	GO:0048575: short-day photoperiodism, flowering	8.21E-04
13	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	8.21E-04
14	GO:0080117: secondary growth	8.21E-04
15	GO:0010371: regulation of gibberellin biosynthetic process	1.17E-03
16	GO:0034059: response to anoxia	1.17E-03
17	GO:1990019: protein storage vacuole organization	1.17E-03
18	GO:0071215: cellular response to abscisic acid stimulus	1.38E-03
19	GO:0009686: gibberellin biosynthetic process	1.38E-03
20	GO:0009755: hormone-mediated signaling pathway	1.56E-03
21	GO:0010087: phloem or xylem histogenesis	1.76E-03
22	GO:0010438: cellular response to sulfur starvation	1.99E-03
23	GO:0009696: salicylic acid metabolic process	1.99E-03
24	GO:0045487: gibberellin catabolic process	1.99E-03
25	GO:0003006: developmental process involved in reproduction	2.45E-03
26	GO:0010942: positive regulation of cell death	2.45E-03
27	GO:0010358: leaf shaping	2.45E-03
28	GO:1902456: regulation of stomatal opening	2.45E-03
29	GO:0048831: regulation of shoot system development	2.45E-03
30	GO:0032502: developmental process	2.49E-03
31	GO:0009733: response to auxin	2.91E-03
32	GO:0048509: regulation of meristem development	2.94E-03
33	GO:0031930: mitochondria-nucleus signaling pathway	2.94E-03
34	GO:0009690: cytokinin metabolic process	4.02E-03
35	GO:0009704: de-etiolation	4.02E-03
36	GO:2000070: regulation of response to water deprivation	4.02E-03
37	GO:0009819: drought recovery	4.02E-03
38	GO:0042255: ribosome assembly	4.02E-03
39	GO:0006353: DNA-templated transcription, termination	4.02E-03
40	GO:0006402: mRNA catabolic process	4.02E-03
41	GO:0010439: regulation of glucosinolate biosynthetic process	4.02E-03
42	GO:0007186: G-protein coupled receptor signaling pathway	4.60E-03
43	GO:0010497: plasmodesmata-mediated intercellular transport	4.60E-03
44	GO:0009056: catabolic process	5.22E-03
45	GO:0048507: meristem development	5.22E-03
46	GO:0051865: protein autoubiquitination	5.22E-03
47	GO:0009867: jasmonic acid mediated signaling pathway	5.54E-03
48	GO:0009734: auxin-activated signaling pathway	6.45E-03
49	GO:0009641: shade avoidance	6.51E-03
50	GO:0016441: posttranscriptional gene silencing	6.51E-03
51	GO:0006631: fatty acid metabolic process	6.58E-03
52	GO:0009682: induced systemic resistance	7.20E-03
53	GO:0042546: cell wall biogenesis	7.43E-03
54	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.92E-03
55	GO:0010582: floral meristem determinacy	7.92E-03
56	GO:2000028: regulation of photoperiodism, flowering	8.66E-03
57	GO:0009767: photosynthetic electron transport chain	8.66E-03
58	GO:0010588: cotyledon vascular tissue pattern formation	8.66E-03
59	GO:0010102: lateral root morphogenesis	8.66E-03
60	GO:0006302: double-strand break repair	9.42E-03
61	GO:0048467: gynoecium development	9.42E-03
62	GO:0010207: photosystem II assembly	9.42E-03
63	GO:0009909: regulation of flower development	1.07E-02
64	GO:0048367: shoot system development	1.18E-02
65	GO:0005992: trehalose biosynthetic process	1.19E-02
66	GO:0045892: negative regulation of transcription, DNA-templated	1.30E-02
67	GO:0016114: terpenoid biosynthetic process	1.36E-02
68	GO:0010431: seed maturation	1.36E-02
69	GO:0051321: meiotic cell cycle	1.36E-02
70	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.45E-02
71	GO:0010082: regulation of root meristem growth	1.54E-02
72	GO:0009625: response to insect	1.54E-02
73	GO:0009693: ethylene biosynthetic process	1.54E-02
74	GO:0006284: base-excision repair	1.64E-02
75	GO:0070417: cellular response to cold	1.73E-02
76	GO:0080022: primary root development	1.83E-02
77	GO:0010501: RNA secondary structure unwinding	1.83E-02
78	GO:0010118: stomatal movement	1.83E-02
79	GO:0010182: sugar mediated signaling pathway	1.93E-02
80	GO:0009741: response to brassinosteroid	1.93E-02
81	GO:0010268: brassinosteroid homeostasis	1.93E-02
82	GO:0010305: leaf vascular tissue pattern formation	1.93E-02
83	GO:0016567: protein ubiquitination	2.02E-02
84	GO:0016132: brassinosteroid biosynthetic process	2.24E-02
85	GO:0071554: cell wall organization or biogenesis	2.24E-02
86	GO:0002229: defense response to oomycetes	2.24E-02
87	GO:0019761: glucosinolate biosynthetic process	2.35E-02
88	GO:0010583: response to cyclopentenone	2.35E-02
89	GO:0031047: gene silencing by RNA	2.35E-02
90	GO:0016125: sterol metabolic process	2.57E-02
91	GO:0009739: response to gibberellin	2.67E-02
92	GO:0051607: defense response to virus	2.80E-02
93	GO:0007165: signal transduction	2.81E-02
94	GO:0010029: regulation of seed germination	3.03E-02
95	GO:0009627: systemic acquired resistance	3.15E-02
96	GO:0010411: xyloglucan metabolic process	3.27E-02
97	GO:0048573: photoperiodism, flowering	3.27E-02
98	GO:0009416: response to light stimulus	3.41E-02
99	GO:0006351: transcription, DNA-templated	3.46E-02
100	GO:0009817: defense response to fungus, incompatible interaction	3.52E-02
101	GO:0009826: unidimensional cell growth	3.55E-02
102	GO:0000160: phosphorelay signal transduction system	3.65E-02
103	GO:0009658: chloroplast organization	3.68E-02
104	GO:0007568: aging	3.90E-02
105	GO:0048527: lateral root development	3.90E-02
106	GO:0006865: amino acid transport	4.03E-02
107	GO:0048366: leaf development	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0080030: methyl indole-3-acetate esterase activity	8.60E-05
3	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	2.27E-04
4	GO:0010012: steroid 22-alpha hydroxylase activity	2.27E-04
5	GO:0045543: gibberellin 2-beta-dioxygenase activity	5.05E-04
6	GO:0010296: prenylcysteine methylesterase activity	5.05E-04
7	GO:0009884: cytokinin receptor activity	5.05E-04
8	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	8.21E-04
9	GO:0005034: osmosensor activity	8.21E-04
10	GO:0080031: methyl salicylate esterase activity	1.17E-03
11	GO:0045544: gibberellin 20-oxidase activity	1.17E-03
12	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.17E-03
13	GO:0046556: alpha-L-arabinofuranosidase activity	1.56E-03
14	GO:0019104: DNA N-glycosylase activity	1.56E-03
15	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.99E-03
16	GO:0004709: MAP kinase kinase kinase activity	2.45E-03
17	GO:0019900: kinase binding	2.94E-03
18	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.94E-03
19	GO:0016832: aldehyde-lyase activity	2.94E-03
20	GO:0004871: signal transducer activity	2.99E-03
21	GO:0003724: RNA helicase activity	4.60E-03
22	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.22E-03
23	GO:0004673: protein histidine kinase activity	6.51E-03
24	GO:0004805: trehalose-phosphatase activity	6.51E-03
25	GO:0043621: protein self-association	7.73E-03
26	GO:0016788: hydrolase activity, acting on ester bonds	7.90E-03
27	GO:0000155: phosphorelay sensor kinase activity	8.66E-03
28	GO:0003712: transcription cofactor activity	1.02E-02
29	GO:0031418: L-ascorbic acid binding	1.19E-02
30	GO:0043424: protein histidine kinase binding	1.27E-02
31	GO:0016874: ligase activity	1.29E-02
32	GO:0003964: RNA-directed DNA polymerase activity	1.36E-02
33	GO:0008408: 3'-5' exonuclease activity	1.36E-02
34	GO:0010333: terpene synthase activity	1.36E-02
35	GO:0015035: protein disulfide oxidoreductase activity	1.42E-02
36	GO:0004722: protein serine/threonine phosphatase activity	1.43E-02
37	GO:0003727: single-stranded RNA binding	1.64E-02
38	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.77E-02
39	GO:0009055: electron carrier activity	1.82E-02
40	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.93E-02
41	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.97E-02
42	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.24E-02
43	GO:0004518: nuclease activity	2.35E-02
44	GO:0016759: cellulose synthase activity	2.57E-02
45	GO:0016413: O-acetyltransferase activity	2.80E-02
46	GO:0051213: dioxygenase activity	2.91E-02
47	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.27E-02
48	GO:0004721: phosphoprotein phosphatase activity	3.27E-02
49	GO:0004004: ATP-dependent RNA helicase activity	3.27E-02
50	GO:0008236: serine-type peptidase activity	3.40E-02
51	GO:0005096: GTPase activator activity	3.65E-02
52	GO:0030145: manganese ion binding	3.90E-02
53	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.90E-02
54	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.17E-02
55	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.43E-02
56	GO:0051539: 4 iron, 4 sulfur cluster binding	4.57E-02
57	GO:0030246: carbohydrate binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0000791: euchromatin	2.27E-04
2	GO:0030870: Mre11 complex	5.05E-04
3	GO:0009654: photosystem II oxygen evolving complex	1.06E-03
4	GO:0009544: chloroplast ATP synthase complex	1.56E-03
5	GO:0000795: synaptonemal complex	1.99E-03
6	GO:0019898: extrinsic component of membrane	2.18E-03
7	GO:0010494: cytoplasmic stress granule	5.22E-03
8	GO:0042644: chloroplast nucleoid	5.22E-03
9	GO:0005578: proteinaceous extracellular matrix	8.66E-03
10	GO:0030095: chloroplast photosystem II	9.42E-03
11	GO:0005875: microtubule associated complex	1.10E-02
12	GO:0009532: plastid stroma	1.36E-02
13	GO:0009504: cell plate	2.14E-02
14	GO:0000785: chromatin	2.35E-02
15	GO:0030529: intracellular ribonucleoprotein complex	2.91E-02
16	GO:0031977: thylakoid lumen	4.71E-02
17	GO:0090406: pollen tube	4.98E-02