co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G18220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0061157: mRNA destabilization	0.00E+00
8	GO:2000469: negative regulation of peroxidase activity	0.00E+00
9	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
10	GO:0046620: regulation of organ growth	1.20E-08
11	GO:0009734: auxin-activated signaling pathway	1.77E-07
12	GO:0009733: response to auxin	3.52E-07
13	GO:0040008: regulation of growth	1.09E-05
14	GO:0018026: peptidyl-lysine monomethylation	1.70E-05
15	GO:0016131: brassinosteroid metabolic process	3.03E-04
16	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.10E-04
17	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	6.28E-04
18	GO:0030198: extracellular matrix organization	6.28E-04
19	GO:0046520: sphingoid biosynthetic process	6.28E-04
20	GO:0010063: positive regulation of trichoblast fate specification	6.28E-04
21	GO:0010480: microsporocyte differentiation	6.28E-04
22	GO:0051247: positive regulation of protein metabolic process	6.28E-04
23	GO:1902458: positive regulation of stomatal opening	6.28E-04
24	GO:0015904: tetracycline transport	6.28E-04
25	GO:2000905: negative regulation of starch metabolic process	6.28E-04
26	GO:0000305: response to oxygen radical	6.28E-04
27	GO:0000023: maltose metabolic process	6.28E-04
28	GO:0000025: maltose catabolic process	6.28E-04
29	GO:0048437: floral organ development	7.20E-04
30	GO:0030307: positive regulation of cell growth	7.20E-04
31	GO:2000070: regulation of response to water deprivation	8.95E-04
32	GO:0010305: leaf vascular tissue pattern formation	1.20E-03
33	GO:0010182: sugar mediated signaling pathway	1.20E-03
34	GO:0009926: auxin polar transport	1.27E-03
35	GO:0048507: meristem development	1.30E-03
36	GO:0009416: response to light stimulus	1.30E-03
37	GO:0009646: response to absence of light	1.31E-03
38	GO:0009629: response to gravity	1.35E-03
39	GO:1900871: chloroplast mRNA modification	1.35E-03
40	GO:0006432: phenylalanyl-tRNA aminoacylation	1.35E-03
41	GO:0007154: cell communication	1.35E-03
42	GO:0071497: cellular response to freezing	1.35E-03
43	GO:1900033: negative regulation of trichome patterning	1.35E-03
44	GO:0080009: mRNA methylation	1.35E-03
45	GO:0009786: regulation of asymmetric cell division	1.35E-03
46	GO:0031648: protein destabilization	1.35E-03
47	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.35E-03
48	GO:0006568: tryptophan metabolic process	1.35E-03
49	GO:0015824: proline transport	1.35E-03
50	GO:0009098: leucine biosynthetic process	1.54E-03
51	GO:1900865: chloroplast RNA modification	1.54E-03
52	GO:0048829: root cap development	1.80E-03
53	GO:0009773: photosynthetic electron transport in photosystem I	2.08E-03
54	GO:0048586: regulation of long-day photoperiodism, flowering	2.23E-03
55	GO:0071398: cellular response to fatty acid	2.23E-03
56	GO:0033591: response to L-ascorbic acid	2.23E-03
57	GO:0005983: starch catabolic process	2.39E-03
58	GO:0010027: thylakoid membrane organization	2.52E-03
59	GO:0007275: multicellular organism development	2.57E-03
60	GO:0010588: cotyledon vascular tissue pattern formation	2.72E-03
61	GO:0010102: lateral root morphogenesis	2.72E-03
62	GO:0006006: glucose metabolic process	2.72E-03
63	GO:0010306: rhamnogalacturonan II biosynthetic process	3.23E-03
64	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.23E-03
65	GO:1990019: protein storage vacuole organization	3.23E-03
66	GO:0016556: mRNA modification	3.23E-03
67	GO:0090308: regulation of methylation-dependent chromatin silencing	3.23E-03
68	GO:0010371: regulation of gibberellin biosynthetic process	3.23E-03
69	GO:0010071: root meristem specification	3.23E-03
70	GO:0051513: regulation of monopolar cell growth	3.23E-03
71	GO:0009102: biotin biosynthetic process	3.23E-03
72	GO:0006221: pyrimidine nucleotide biosynthetic process	4.36E-03
73	GO:0008295: spermidine biosynthetic process	4.36E-03
74	GO:0006749: glutathione metabolic process	4.36E-03
75	GO:0042938: dipeptide transport	4.36E-03
76	GO:0009755: hormone-mediated signaling pathway	4.36E-03
77	GO:1901141: regulation of lignin biosynthetic process	4.36E-03
78	GO:0048629: trichome patterning	4.36E-03
79	GO:0010109: regulation of photosynthesis	4.36E-03
80	GO:0042274: ribosomal small subunit biogenesis	4.36E-03
81	GO:2000306: positive regulation of photomorphogenesis	4.36E-03
82	GO:0006865: amino acid transport	4.52E-03
83	GO:0010431: seed maturation	5.19E-03
84	GO:0045487: gibberellin catabolic process	5.60E-03
85	GO:0045038: protein import into chloroplast thylakoid membrane	5.60E-03
86	GO:0048497: maintenance of floral organ identity	5.60E-03
87	GO:0016123: xanthophyll biosynthetic process	5.60E-03
88	GO:0010438: cellular response to sulfur starvation	5.60E-03
89	GO:0009686: gibberellin biosynthetic process	6.21E-03
90	GO:0009913: epidermal cell differentiation	6.95E-03
91	GO:0016554: cytidine to uridine editing	6.95E-03
92	GO:1902456: regulation of stomatal opening	6.95E-03
93	GO:0042793: transcription from plastid promoter	6.95E-03
94	GO:0048831: regulation of shoot system development	6.95E-03
95	GO:0003006: developmental process involved in reproduction	6.95E-03
96	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.95E-03
97	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	6.95E-03
98	GO:0010405: arabinogalactan protein metabolic process	6.95E-03
99	GO:0009959: negative gravitropism	6.95E-03
100	GO:0006855: drug transmembrane transport	8.10E-03
101	GO:0009082: branched-chain amino acid biosynthetic process	8.41E-03
102	GO:0006458: 'de novo' protein folding	8.41E-03
103	GO:0042026: protein refolding	8.41E-03
104	GO:0048280: vesicle fusion with Golgi apparatus	8.41E-03
105	GO:2000033: regulation of seed dormancy process	8.41E-03
106	GO:0031930: mitochondria-nucleus signaling pathway	8.41E-03
107	GO:0009099: valine biosynthetic process	8.41E-03
108	GO:0030488: tRNA methylation	8.41E-03
109	GO:0080086: stamen filament development	8.41E-03
110	GO:0010098: suspensor development	9.96E-03
111	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	9.96E-03
112	GO:0010161: red light signaling pathway	9.96E-03
113	GO:0006955: immune response	9.96E-03
114	GO:0030497: fatty acid elongation	9.96E-03
115	GO:0010583: response to cyclopentenone	1.13E-02
116	GO:0006402: mRNA catabolic process	1.16E-02
117	GO:0010439: regulation of glucosinolate biosynthetic process	1.16E-02
118	GO:0009819: drought recovery	1.16E-02
119	GO:0006605: protein targeting	1.16E-02
120	GO:0009704: de-etiolation	1.16E-02
121	GO:0000105: histidine biosynthetic process	1.16E-02
122	GO:1901657: glycosyl compound metabolic process	1.21E-02
123	GO:0010252: auxin homeostasis	1.29E-02
124	GO:0007186: G-protein coupled receptor signaling pathway	1.34E-02
125	GO:0009097: isoleucine biosynthetic process	1.34E-02
126	GO:0010100: negative regulation of photomorphogenesis	1.34E-02
127	GO:0010099: regulation of photomorphogenesis	1.34E-02
128	GO:0015996: chlorophyll catabolic process	1.34E-02
129	GO:0009740: gibberellic acid mediated signaling pathway	1.42E-02
130	GO:0051865: protein autoubiquitination	1.52E-02
131	GO:0006783: heme biosynthetic process	1.52E-02
132	GO:0000373: Group II intron splicing	1.52E-02
133	GO:0000902: cell morphogenesis	1.52E-02
134	GO:0009051: pentose-phosphate shunt, oxidative branch	1.52E-02
135	GO:0009658: chloroplast organization	1.55E-02
136	GO:0010029: regulation of seed germination	1.63E-02
137	GO:0010018: far-red light signaling pathway	1.71E-02
138	GO:0031425: chloroplast RNA processing	1.71E-02
139	GO:0009638: phototropism	1.71E-02
140	GO:0009299: mRNA transcription	1.91E-02
141	GO:0006896: Golgi to vacuole transport	1.91E-02
142	GO:0009641: shade avoidance	1.91E-02
143	GO:0016441: posttranscriptional gene silencing	1.91E-02
144	GO:0010162: seed dormancy process	1.91E-02
145	GO:0009073: aromatic amino acid family biosynthetic process	2.12E-02
146	GO:0043085: positive regulation of catalytic activity	2.12E-02
147	GO:0009682: induced systemic resistance	2.12E-02
148	GO:0000272: polysaccharide catabolic process	2.12E-02
149	GO:0048229: gametophyte development	2.12E-02
150	GO:0010216: maintenance of DNA methylation	2.12E-02
151	GO:0010015: root morphogenesis	2.12E-02
152	GO:0000038: very long-chain fatty acid metabolic process	2.12E-02
153	GO:0048527: lateral root development	2.33E-02
154	GO:0015706: nitrate transport	2.33E-02
155	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.33E-02
156	GO:0045037: protein import into chloroplast stroma	2.33E-02
157	GO:0010582: floral meristem determinacy	2.33E-02
158	GO:0012501: programmed cell death	2.33E-02
159	GO:2000012: regulation of auxin polar transport	2.56E-02
160	GO:0010628: positive regulation of gene expression	2.56E-02
161	GO:0009691: cytokinin biosynthetic process	2.56E-02
162	GO:2000028: regulation of photoperiodism, flowering	2.56E-02
163	GO:0010075: regulation of meristem growth	2.56E-02
164	GO:0009725: response to hormone	2.56E-02
165	GO:0009767: photosynthetic electron transport chain	2.56E-02
166	GO:0034599: cellular response to oxidative stress	2.68E-02
167	GO:0010207: photosystem II assembly	2.79E-02
168	GO:0009934: regulation of meristem structural organization	2.79E-02
169	GO:0048467: gynoecium development	2.79E-02
170	GO:0045892: negative regulation of transcription, DNA-templated	2.85E-02
171	GO:0090351: seedling development	3.02E-02
172	GO:0010030: positive regulation of seed germination	3.02E-02
173	GO:0070588: calcium ion transmembrane transport	3.02E-02
174	GO:0006631: fatty acid metabolic process	3.04E-02
175	GO:0009451: RNA modification	3.14E-02
176	GO:0006468: protein phosphorylation	3.21E-02
177	GO:0042753: positive regulation of circadian rhythm	3.27E-02
178	GO:0006071: glycerol metabolic process	3.27E-02
179	GO:0019762: glucosinolate catabolic process	3.27E-02
180	GO:0000162: tryptophan biosynthetic process	3.27E-02
181	GO:0009640: photomorphogenesis	3.30E-02
182	GO:0080147: root hair cell development	3.52E-02
183	GO:0051017: actin filament bundle assembly	3.52E-02
184	GO:0010187: negative regulation of seed germination	3.52E-02
185	GO:0005992: trehalose biosynthetic process	3.52E-02
186	GO:0007166: cell surface receptor signaling pathway	3.60E-02
187	GO:0016042: lipid catabolic process	3.63E-02
188	GO:0048278: vesicle docking	4.03E-02
189	GO:0016114: terpenoid biosynthetic process	4.03E-02
190	GO:0003333: amino acid transmembrane transport	4.03E-02
191	GO:0016998: cell wall macromolecule catabolic process	4.03E-02
192	GO:0048511: rhythmic process	4.03E-02
193	GO:0061077: chaperone-mediated protein folding	4.03E-02
194	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.30E-02
195	GO:0031348: negative regulation of defense response	4.30E-02
196	GO:0009585: red, far-red light phototransduction	4.44E-02
197	GO:0010082: regulation of root meristem growth	4.57E-02
198	GO:0009693: ethylene biosynthetic process	4.57E-02
199	GO:0071215: cellular response to abscisic acid stimulus	4.57E-02
200	GO:0009625: response to insect	4.57E-02
201	GO:0009793: embryo development ending in seed dormancy	4.60E-02
202	GO:0006857: oligopeptide transport	4.75E-02
203	GO:0042127: regulation of cell proliferation	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0005363: maltose transmembrane transporter activity	0.00E+00
7	GO:0016279: protein-lysine N-methyltransferase activity	2.01E-04
8	GO:0042834: peptidoglycan binding	6.28E-04
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	6.28E-04
10	GO:0004134: 4-alpha-glucanotransferase activity	6.28E-04
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.28E-04
12	GO:0008395: steroid hydroxylase activity	6.28E-04
13	GO:0052381: tRNA dimethylallyltransferase activity	6.28E-04
14	GO:0010313: phytochrome binding	6.28E-04
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	6.28E-04
16	GO:0000170: sphingosine hydroxylase activity	6.28E-04
17	GO:0050139: nicotinate-N-glucosyltransferase activity	6.28E-04
18	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	6.28E-04
19	GO:0005227: calcium activated cation channel activity	6.28E-04
20	GO:0004425: indole-3-glycerol-phosphate synthase activity	6.28E-04
21	GO:0008805: carbon-monoxide oxygenase activity	1.35E-03
22	GO:0042284: sphingolipid delta-4 desaturase activity	1.35E-03
23	GO:0008493: tetracycline transporter activity	1.35E-03
24	GO:0004826: phenylalanine-tRNA ligase activity	1.35E-03
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.35E-03
26	GO:0017118: lipoyltransferase activity	1.35E-03
27	GO:0004362: glutathione-disulfide reductase activity	1.35E-03
28	GO:0003852: 2-isopropylmalate synthase activity	1.35E-03
29	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.35E-03
30	GO:0043425: bHLH transcription factor binding	1.35E-03
31	GO:0004766: spermidine synthase activity	1.35E-03
32	GO:0003913: DNA photolyase activity	2.23E-03
33	GO:0015193: L-proline transmembrane transporter activity	2.23E-03
34	GO:0016805: dipeptidase activity	2.23E-03
35	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.23E-03
36	GO:0004180: carboxypeptidase activity	2.23E-03
37	GO:0009041: uridylate kinase activity	3.23E-03
38	GO:0052656: L-isoleucine transaminase activity	3.23E-03
39	GO:0052654: L-leucine transaminase activity	3.23E-03
40	GO:0052655: L-valine transaminase activity	3.23E-03
41	GO:0001872: (1->3)-beta-D-glucan binding	3.23E-03
42	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.23E-03
43	GO:0015238: drug transmembrane transporter activity	3.77E-03
44	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.26E-03
45	GO:0005528: FK506 binding	4.27E-03
46	GO:0004084: branched-chain-amino-acid transaminase activity	4.36E-03
47	GO:0019199: transmembrane receptor protein kinase activity	4.36E-03
48	GO:0004345: glucose-6-phosphate dehydrogenase activity	4.36E-03
49	GO:0042936: dipeptide transporter activity	4.36E-03
50	GO:0004523: RNA-DNA hybrid ribonuclease activity	5.60E-03
51	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.60E-03
52	GO:0004130: cytochrome-c peroxidase activity	6.95E-03
53	GO:0004462: lactoylglutathione lyase activity	6.95E-03
54	GO:0102229: amylopectin maltohydrolase activity	6.95E-03
55	GO:0016688: L-ascorbate peroxidase activity	6.95E-03
56	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	6.95E-03
57	GO:0080030: methyl indole-3-acetate esterase activity	6.95E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.95E-03
59	GO:0004709: MAP kinase kinase kinase activity	6.95E-03
60	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.41E-03
61	GO:0016832: aldehyde-lyase activity	8.41E-03
62	GO:0016161: beta-amylase activity	8.41E-03
63	GO:0005215: transporter activity	8.86E-03
64	GO:0015171: amino acid transmembrane transporter activity	1.11E-02
65	GO:0004518: nuclease activity	1.13E-02
66	GO:0016759: cellulose synthase activity	1.29E-02
67	GO:0008173: RNA methyltransferase activity	1.34E-02
68	GO:0005200: structural constituent of cytoskeleton	1.37E-02
69	GO:0004519: endonuclease activity	1.42E-02
70	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.52E-02
71	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.52E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	1.59E-02
73	GO:0004674: protein serine/threonine kinase activity	1.69E-02
74	GO:0003723: RNA binding	1.76E-02
75	GO:0102483: scopolin beta-glucosidase activity	1.82E-02
76	GO:0004805: trehalose-phosphatase activity	1.91E-02
77	GO:0030234: enzyme regulator activity	1.91E-02
78	GO:0008047: enzyme activator activity	1.91E-02
79	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.11E-02
80	GO:0044183: protein binding involved in protein folding	2.12E-02
81	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.33E-02
82	GO:0000049: tRNA binding	2.33E-02
83	GO:0052689: carboxylic ester hydrolase activity	2.48E-02
84	GO:0003725: double-stranded RNA binding	2.56E-02
85	GO:0005262: calcium channel activity	2.56E-02
86	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.80E-02
87	GO:0008422: beta-glucosidase activity	2.80E-02
88	GO:0000149: SNARE binding	2.80E-02
89	GO:0015297: antiporter activity	2.88E-02
90	GO:0050661: NADP binding	2.92E-02
91	GO:0004871: signal transducer activity	2.99E-02
92	GO:0003712: transcription cofactor activity	3.02E-02
93	GO:0008146: sulfotransferase activity	3.02E-02
94	GO:0004190: aspartic-type endopeptidase activity	3.02E-02
95	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.27E-02
96	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.27E-02
97	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.27E-02
98	GO:0005484: SNAP receptor activity	3.30E-02
99	GO:0031418: L-ascorbic acid binding	3.52E-02
100	GO:0043621: protein self-association	3.57E-02
101	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.85E-02
102	GO:0004176: ATP-dependent peptidase activity	4.03E-02
103	GO:0033612: receptor serine/threonine kinase binding	4.03E-02
104	GO:0003964: RNA-directed DNA polymerase activity	4.03E-02
105	GO:0010333: terpene synthase activity	4.03E-02
106	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.36E-02
107	GO:0016298: lipase activity	4.59E-02
108	GO:0003727: single-stranded RNA binding	4.85E-02
109	GO:0008514: organic anion transmembrane transporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.35E-03
2	GO:0019897: extrinsic component of plasma membrane	2.23E-03
3	GO:0030139: endocytic vesicle	2.23E-03
4	GO:0009528: plastid inner membrane	2.23E-03
5	GO:0005886: plasma membrane	2.38E-03
6	GO:0009507: chloroplast	2.57E-03
7	GO:0032585: multivesicular body membrane	3.23E-03
8	GO:0009544: chloroplast ATP synthase complex	4.36E-03
9	GO:0009527: plastid outer membrane	4.36E-03
10	GO:0009654: photosystem II oxygen evolving complex	4.71E-03
11	GO:0009570: chloroplast stroma	5.01E-03
12	GO:0015629: actin cytoskeleton	6.21E-03
13	GO:0019898: extrinsic component of membrane	9.90E-03
14	GO:0009986: cell surface	9.96E-03
15	GO:0012507: ER to Golgi transport vesicle membrane	1.16E-02
16	GO:0009501: amyloplast	1.16E-02
17	GO:0046658: anchored component of plasma membrane	1.22E-02
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.52E-02
19	GO:0005720: nuclear heterochromatin	1.52E-02
20	GO:0010494: cytoplasmic stress granule	1.52E-02
21	GO:0009534: chloroplast thylakoid	1.68E-02
22	GO:0009535: chloroplast thylakoid membrane	1.99E-02
23	GO:0009543: chloroplast thylakoid lumen	2.04E-02
24	GO:0009508: plastid chromosome	2.56E-02
25	GO:0031225: anchored component of membrane	2.72E-02
26	GO:0030095: chloroplast photosystem II	2.79E-02
27	GO:0009941: chloroplast envelope	2.96E-02
28	GO:0031902: late endosome membrane	3.04E-02
29	GO:0031201: SNARE complex	3.04E-02
30	GO:0009532: plastid stroma	4.03E-02
31	GO:0043231: intracellular membrane-bounded organelle	4.36E-02