Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G16515

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902326: positive regulation of chlorophyll biosynthetic process0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
6GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
7GO:0018023: peptidyl-lysine trimethylation0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0006429: leucyl-tRNA aminoacylation0.00E+00
10GO:1905421: regulation of plant organ morphogenesis0.00E+00
11GO:0002184: cytoplasmic translational termination0.00E+00
12GO:0030155: regulation of cell adhesion0.00E+00
13GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
14GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
15GO:0090071: negative regulation of ribosome biogenesis0.00E+00
16GO:0017038: protein import0.00E+00
17GO:0009658: chloroplast organization5.79E-06
18GO:1901259: chloroplast rRNA processing7.00E-06
19GO:0015995: chlorophyll biosynthetic process1.34E-05
20GO:0009733: response to auxin4.56E-05
21GO:0046739: transport of virus in multicellular host5.54E-05
22GO:2001141: regulation of RNA biosynthetic process5.54E-05
23GO:0009765: photosynthesis, light harvesting9.74E-05
24GO:0009734: auxin-activated signaling pathway1.30E-04
25GO:0016123: xanthophyll biosynthetic process1.51E-04
26GO:0042372: phylloquinone biosynthetic process2.91E-04
27GO:0048437: floral organ development3.76E-04
28GO:0005980: glycogen catabolic process4.05E-04
29GO:0030198: extracellular matrix organization4.05E-04
30GO:0043266: regulation of potassium ion transport4.05E-04
31GO:0010442: guard cell morphogenesis4.05E-04
32GO:0010063: positive regulation of trichoblast fate specification4.05E-04
33GO:0010480: microsporocyte differentiation4.05E-04
34GO:0042759: long-chain fatty acid biosynthetic process4.05E-04
35GO:0042371: vitamin K biosynthetic process4.05E-04
36GO:2000021: regulation of ion homeostasis4.05E-04
37GO:0043007: maintenance of rDNA4.05E-04
38GO:1902458: positive regulation of stomatal opening4.05E-04
39GO:0015904: tetracycline transport4.05E-04
40GO:0005991: trehalose metabolic process4.05E-04
41GO:0006419: alanyl-tRNA aminoacylation4.05E-04
42GO:0070509: calcium ion import4.05E-04
43GO:0010182: sugar mediated signaling pathway5.22E-04
44GO:0010497: plasmodesmata-mediated intercellular transport5.75E-04
45GO:0071482: cellular response to light stimulus5.75E-04
46GO:1901959: positive regulation of cutin biosynthetic process8.76E-04
47GO:0018026: peptidyl-lysine monomethylation8.76E-04
48GO:1904143: positive regulation of carotenoid biosynthetic process8.76E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process8.76E-04
50GO:0052541: plant-type cell wall cellulose metabolic process8.76E-04
51GO:0060359: response to ammonium ion8.76E-04
52GO:0006352: DNA-templated transcription, initiation1.09E-03
53GO:0010027: thylakoid membrane organization1.09E-03
54GO:0016024: CDP-diacylglycerol biosynthetic process1.24E-03
55GO:2000012: regulation of auxin polar transport1.41E-03
56GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.42E-03
57GO:1904278: positive regulation of wax biosynthetic process1.42E-03
58GO:0043157: response to cation stress1.42E-03
59GO:0072661: protein targeting to plasma membrane1.42E-03
60GO:0048281: inflorescence morphogenesis1.42E-03
61GO:0010020: chloroplast fission1.59E-03
62GO:0010207: photosystem II assembly1.59E-03
63GO:0070588: calcium ion transmembrane transport1.78E-03
64GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.06E-03
65GO:0031048: chromatin silencing by small RNA2.06E-03
66GO:0010148: transpiration2.06E-03
67GO:0043572: plastid fission2.06E-03
68GO:0016556: mRNA modification2.06E-03
69GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.06E-03
70GO:0010071: root meristem specification2.06E-03
71GO:0007231: osmosensory signaling pathway2.06E-03
72GO:0009102: biotin biosynthetic process2.06E-03
73GO:0009647: skotomorphogenesis2.06E-03
74GO:0019048: modulation by virus of host morphology or physiology2.06E-03
75GO:0009790: embryo development2.22E-03
76GO:0007017: microtubule-based process2.43E-03
77GO:0015979: photosynthesis2.43E-03
78GO:0007275: multicellular organism development2.65E-03
79GO:0061077: chaperone-mediated protein folding2.67E-03
80GO:0040008: regulation of growth2.68E-03
81GO:0045723: positive regulation of fatty acid biosynthetic process2.76E-03
82GO:0051567: histone H3-K9 methylation2.76E-03
83GO:0010109: regulation of photosynthesis2.76E-03
84GO:0006109: regulation of carbohydrate metabolic process2.76E-03
85GO:2000122: negative regulation of stomatal complex development2.76E-03
86GO:0033500: carbohydrate homeostasis2.76E-03
87GO:0032543: mitochondrial translation3.54E-03
88GO:0010236: plastoquinone biosynthetic process3.54E-03
89GO:0016120: carotene biosynthetic process3.54E-03
90GO:0045038: protein import into chloroplast thylakoid membrane3.54E-03
91GO:0000304: response to singlet oxygen3.54E-03
92GO:0010375: stomatal complex patterning3.54E-03
93GO:0016042: lipid catabolic process3.63E-03
94GO:0009664: plant-type cell wall organization3.80E-03
95GO:0016458: gene silencing4.38E-03
96GO:0032973: amino acid export4.38E-03
97GO:0000741: karyogamy4.38E-03
98GO:0010305: leaf vascular tissue pattern formation4.38E-03
99GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione4.38E-03
100GO:0009959: negative gravitropism4.38E-03
101GO:0006655: phosphatidylglycerol biosynthetic process4.38E-03
102GO:0016554: cytidine to uridine editing4.38E-03
103GO:0042793: transcription from plastid promoter4.38E-03
104GO:0009646: response to absence of light4.71E-03
105GO:0006458: 'de novo' protein folding5.27E-03
106GO:0017148: negative regulation of translation5.27E-03
107GO:0042026: protein refolding5.27E-03
108GO:0048280: vesicle fusion with Golgi apparatus5.27E-03
109GO:2000033: regulation of seed dormancy process5.27E-03
110GO:0080086: stamen filament development5.27E-03
111GO:0010444: guard mother cell differentiation6.23E-03
112GO:0006400: tRNA modification6.23E-03
113GO:0030307: positive regulation of cell growth6.23E-03
114GO:0010103: stomatal complex morphogenesis6.23E-03
115GO:0010374: stomatal complex development6.23E-03
116GO:0048528: post-embryonic root development6.23E-03
117GO:0009772: photosynthetic electron transport in photosystem II6.23E-03
118GO:0043090: amino acid import6.23E-03
119GO:0070370: cellular heat acclimation6.23E-03
120GO:0009828: plant-type cell wall loosening6.57E-03
121GO:0009742: brassinosteroid mediated signaling pathway7.03E-03
122GO:0006605: protein targeting7.25E-03
123GO:0046620: regulation of organ growth7.25E-03
124GO:2000070: regulation of response to water deprivation7.25E-03
125GO:0070413: trehalose metabolism in response to stress7.25E-03
126GO:0048564: photosystem I assembly7.25E-03
127GO:0010052: guard cell differentiation8.32E-03
128GO:0007186: G-protein coupled receptor signaling pathway8.32E-03
129GO:0009657: plastid organization8.32E-03
130GO:0032544: plastid translation8.32E-03
131GO:0015996: chlorophyll catabolic process8.32E-03
132GO:0001558: regulation of cell growth8.32E-03
133GO:0009627: systemic acquired resistance8.77E-03
134GO:0080144: amino acid homeostasis9.45E-03
135GO:0046916: cellular transition metal ion homeostasis9.45E-03
136GO:0048507: meristem development9.45E-03
137GO:0000902: cell morphogenesis9.45E-03
138GO:0009835: fruit ripening9.45E-03
139GO:0018298: protein-chromophore linkage1.03E-02
140GO:0009793: embryo development ending in seed dormancy1.03E-02
141GO:0009416: response to light stimulus1.04E-02
142GO:1900865: chloroplast RNA modification1.06E-02
143GO:0031425: chloroplast RNA processing1.06E-02
144GO:0071577: zinc II ion transmembrane transport1.06E-02
145GO:0009638: phototropism1.06E-02
146GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
147GO:0006896: Golgi to vacuole transport1.19E-02
148GO:0006782: protoporphyrinogen IX biosynthetic process1.19E-02
149GO:0030422: production of siRNA involved in RNA interference1.19E-02
150GO:0048829: root cap development1.19E-02
151GO:0045036: protein targeting to chloroplast1.19E-02
152GO:0006949: syncytium formation1.19E-02
153GO:0010162: seed dormancy process1.19E-02
154GO:0009073: aromatic amino acid family biosynthetic process1.31E-02
155GO:0043085: positive regulation of catalytic activity1.31E-02
156GO:0009773: photosynthetic electron transport in photosystem I1.31E-02
157GO:0006415: translational termination1.31E-02
158GO:0048229: gametophyte development1.31E-02
159GO:0019684: photosynthesis, light reaction1.31E-02
160GO:0006816: calcium ion transport1.31E-02
161GO:0009089: lysine biosynthetic process via diaminopimelate1.31E-02
162GO:0005983: starch catabolic process1.45E-02
163GO:0045037: protein import into chloroplast stroma1.45E-02
164GO:0030001: metal ion transport1.49E-02
165GO:0007166: cell surface receptor signaling pathway1.55E-02
166GO:0055085: transmembrane transport1.57E-02
167GO:0010628: positive regulation of gene expression1.58E-02
168GO:0010102: lateral root morphogenesis1.58E-02
169GO:0050826: response to freezing1.58E-02
170GO:0009718: anthocyanin-containing compound biosynthetic process1.58E-02
171GO:0010075: regulation of meristem growth1.58E-02
172GO:0030048: actin filament-based movement1.58E-02
173GO:0010588: cotyledon vascular tissue pattern formation1.58E-02
174GO:0009640: photomorphogenesis1.69E-02
175GO:0009887: animal organ morphogenesis1.73E-02
176GO:0009266: response to temperature stimulus1.73E-02
177GO:0009934: regulation of meristem structural organization1.73E-02
178GO:0010143: cutin biosynthetic process1.73E-02
179GO:0019853: L-ascorbic acid biosynthetic process1.87E-02
180GO:0010030: positive regulation of seed germination1.87E-02
181GO:0006508: proteolysis1.96E-02
182GO:0010025: wax biosynthetic process2.02E-02
183GO:0006071: glycerol metabolic process2.02E-02
184GO:0006833: water transport2.02E-02
185GO:0005992: trehalose biosynthetic process2.18E-02
186GO:0009944: polarity specification of adaxial/abaxial axis2.18E-02
187GO:0010026: trichome differentiation2.33E-02
188GO:0051302: regulation of cell division2.33E-02
189GO:0006418: tRNA aminoacylation for protein translation2.33E-02
190GO:0051603: proteolysis involved in cellular protein catabolic process2.36E-02
191GO:0006306: DNA methylation2.50E-02
192GO:0003333: amino acid transmembrane transport2.50E-02
193GO:0048511: rhythmic process2.50E-02
194GO:0031408: oxylipin biosynthetic process2.50E-02
195GO:0006810: transport2.59E-02
196GO:0030245: cellulose catabolic process2.66E-02
197GO:0048367: shoot system development2.78E-02
198GO:0048366: leaf development2.80E-02
199GO:0009693: ethylene biosynthetic process2.83E-02
200GO:0009686: gibberellin biosynthetic process2.83E-02
201GO:0001944: vasculature development2.83E-02
202GO:0006012: galactose metabolic process2.83E-02
203GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.83E-02
204GO:0042127: regulation of cell proliferation3.01E-02
205GO:0019722: calcium-mediated signaling3.01E-02
206GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.11E-02
207GO:0042147: retrograde transport, endosome to Golgi3.19E-02
208GO:0016117: carotenoid biosynthetic process3.19E-02
209GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.19E-02
210GO:0034220: ion transmembrane transport3.37E-02
211GO:0010118: stomatal movement3.37E-02
212GO:0048653: anther development3.37E-02
213GO:0042631: cellular response to water deprivation3.37E-02
214GO:0006662: glycerol ether metabolic process3.55E-02
215GO:0010197: polar nucleus fusion3.55E-02
216GO:0006342: chromatin silencing3.55E-02
217GO:0009741: response to brassinosteroid3.55E-02
218GO:0010268: brassinosteroid homeostasis3.55E-02
219GO:0042752: regulation of circadian rhythm3.74E-02
220GO:0006623: protein targeting to vacuole3.93E-02
221GO:0006891: intra-Golgi vesicle-mediated transport4.12E-02
222GO:0016132: brassinosteroid biosynthetic process4.12E-02
223GO:0016032: viral process4.32E-02
224GO:0032502: developmental process4.32E-02
225GO:0009630: gravitropism4.32E-02
226GO:0010583: response to cyclopentenone4.32E-02
227GO:0071281: cellular response to iron ion4.52E-02
228GO:0010090: trichome morphogenesis4.52E-02
229GO:0016125: sterol metabolic process4.73E-02
230GO:0007267: cell-cell signaling4.93E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0004823: leucine-tRNA ligase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0005201: extracellular matrix structural constituent0.00E+00
6GO:0004076: biotin synthase activity0.00E+00
7GO:0010349: L-galactose dehydrogenase activity0.00E+00
8GO:0043023: ribosomal large subunit binding5.54E-05
9GO:0043495: protein anchor9.74E-05
10GO:0001053: plastid sigma factor activity9.74E-05
11GO:0016987: sigma factor activity9.74E-05
12GO:0016773: phosphotransferase activity, alcohol group as acceptor1.51E-04
13GO:0005528: FK506 binding2.06E-04
14GO:0019899: enzyme binding3.76E-04
15GO:0050308: sugar-phosphatase activity4.05E-04
16GO:0019203: carbohydrate phosphatase activity4.05E-04
17GO:0004813: alanine-tRNA ligase activity4.05E-04
18GO:0005080: protein kinase C binding4.05E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.05E-04
20GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.05E-04
21GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.05E-04
22GO:0008184: glycogen phosphorylase activity4.05E-04
23GO:0051777: ent-kaurenoate oxidase activity4.05E-04
24GO:0004856: xylulokinase activity4.05E-04
25GO:0004645: phosphorylase activity4.05E-04
26GO:0052689: carboxylic ester hydrolase activity5.64E-04
27GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.87E-04
28GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.76E-04
29GO:0008493: tetracycline transporter activity8.76E-04
30GO:0016630: protochlorophyllide reductase activity8.76E-04
31GO:0016788: hydrolase activity, acting on ester bonds1.36E-03
32GO:0005262: calcium channel activity1.41E-03
33GO:0002161: aminoacyl-tRNA editing activity1.42E-03
34GO:0016805: dipeptidase activity1.42E-03
35GO:0015462: ATPase-coupled protein transmembrane transporter activity1.42E-03
36GO:0004180: carboxypeptidase activity1.42E-03
37GO:0016149: translation release factor activity, codon specific2.06E-03
38GO:0035197: siRNA binding2.06E-03
39GO:0016851: magnesium chelatase activity2.06E-03
40GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.06E-03
41GO:0004176: ATP-dependent peptidase activity2.67E-03
42GO:0005525: GTP binding2.72E-03
43GO:0019199: transmembrane receptor protein kinase activity2.76E-03
44GO:0042277: peptide binding2.76E-03
45GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.76E-03
46GO:0004659: prenyltransferase activity2.76E-03
47GO:0016279: protein-lysine N-methyltransferase activity2.76E-03
48GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.76E-03
49GO:0004045: aminoacyl-tRNA hydrolase activity2.76E-03
50GO:0022891: substrate-specific transmembrane transporter activity3.19E-03
51GO:0003924: GTPase activity3.82E-03
52GO:0042802: identical protein binding4.15E-03
53GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.16E-03
54GO:0016208: AMP binding4.38E-03
55GO:0004462: lactoylglutathione lyase activity4.38E-03
56GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.38E-03
57GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.38E-03
58GO:2001070: starch binding4.38E-03
59GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.27E-03
60GO:0016791: phosphatase activity6.57E-03
61GO:0005200: structural constituent of cytoskeleton6.98E-03
62GO:0008237: metallopeptidase activity6.98E-03
63GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
64GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity7.25E-03
65GO:0016597: amino acid binding7.41E-03
66GO:0016168: chlorophyll binding8.30E-03
67GO:0046914: transition metal ion binding8.32E-03
68GO:0008889: glycerophosphodiester phosphodiesterase activity9.45E-03
69GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.45E-03
70GO:0003747: translation release factor activity9.45E-03
71GO:0030170: pyridoxal phosphate binding9.93E-03
72GO:0004222: metalloendopeptidase activity1.13E-02
73GO:0008047: enzyme activator activity1.19E-02
74GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.20E-02
75GO:0044183: protein binding involved in protein folding1.31E-02
76GO:0047372: acylglycerol lipase activity1.31E-02
77GO:0000976: transcription regulatory region sequence-specific DNA binding1.45E-02
78GO:0000049: tRNA binding1.45E-02
79GO:0008378: galactosyltransferase activity1.45E-02
80GO:0004521: endoribonuclease activity1.45E-02
81GO:0031072: heat shock protein binding1.58E-02
82GO:0004185: serine-type carboxypeptidase activity1.69E-02
83GO:0008266: poly(U) RNA binding1.73E-02
84GO:0003774: motor activity1.73E-02
85GO:0008146: sulfotransferase activity1.87E-02
86GO:0005385: zinc ion transmembrane transporter activity2.18E-02
87GO:0004857: enzyme inhibitor activity2.18E-02
88GO:0008324: cation transmembrane transporter activity2.33E-02
89GO:0005345: purine nucleobase transmembrane transporter activity2.33E-02
90GO:0033612: receptor serine/threonine kinase binding2.50E-02
91GO:0015171: amino acid transmembrane transporter activity2.52E-02
92GO:0030570: pectate lyase activity2.83E-02
93GO:0008810: cellulase activity2.83E-02
94GO:0003727: single-stranded RNA binding3.01E-02
95GO:0047134: protein-disulfide reductase activity3.19E-02
96GO:0004812: aminoacyl-tRNA ligase activity3.19E-02
97GO:0051082: unfolded protein binding3.24E-02
98GO:0016746: transferase activity, transferring acyl groups3.34E-02
99GO:0008080: N-acetyltransferase activity3.55E-02
100GO:0001085: RNA polymerase II transcription factor binding3.55E-02
101GO:0004791: thioredoxin-disulfide reductase activity3.74E-02
102GO:0019843: rRNA binding4.05E-02
103GO:0005215: transporter activity4.07E-02
104GO:0048038: quinone binding4.12E-02
105GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.16E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.52E-02
107GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.93E-02
108GO:0008483: transaminase activity4.93E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.41E-16
2GO:0009570: chloroplast stroma1.19E-12
3GO:0009941: chloroplast envelope1.98E-06
4GO:0005886: plasma membrane1.84E-05
5GO:0009535: chloroplast thylakoid membrane4.69E-05
6GO:0031969: chloroplast membrane8.91E-05
7GO:0030529: intracellular ribonucleoprotein complex1.30E-04
8GO:0009543: chloroplast thylakoid lumen3.39E-04
9GO:0010319: stromule9.40E-04
10GO:0009534: chloroplast thylakoid1.38E-03
11GO:0009508: plastid chromosome1.41E-03
12GO:0010007: magnesium chelatase complex1.42E-03
13GO:0009528: plastid inner membrane1.42E-03
14GO:0019897: extrinsic component of plasma membrane1.42E-03
15GO:0005719: nuclear euchromatin2.06E-03
16GO:0015630: microtubule cytoskeleton2.06E-03
17GO:0042646: plastid nucleoid2.06E-03
18GO:0042651: thylakoid membrane2.43E-03
19GO:0030663: COPI-coated vesicle membrane2.76E-03
20GO:0009527: plastid outer membrane2.76E-03
21GO:0009579: thylakoid4.46E-03
22GO:0009523: photosystem II5.06E-03
23GO:0009295: nucleoid6.98E-03
24GO:0012507: ER to Golgi transport vesicle membrane7.25E-03
25GO:0042644: chloroplast nucleoid9.45E-03
26GO:0045298: tubulin complex9.45E-03
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.45E-03
28GO:0009707: chloroplast outer membrane1.03E-02
29GO:0015030: Cajal body1.06E-02
30GO:0000418: DNA-directed RNA polymerase IV complex1.19E-02
31GO:0016459: myosin complex1.19E-02
32GO:0030125: clathrin vesicle coat1.19E-02
33GO:0090404: pollen tube tip1.31E-02
34GO:0009536: plastid1.84E-02
35GO:0046658: anchored component of plasma membrane1.87E-02
36GO:0043234: protein complex2.02E-02
37GO:0031225: anchored component of membrane2.23E-02
38GO:0009532: plastid stroma2.50E-02
39GO:0005874: microtubule2.86E-02
40GO:0016021: integral component of membrane3.00E-02
41GO:0009706: chloroplast inner membrane3.24E-02
42GO:0005618: cell wall3.44E-02
43GO:0016020: membrane4.05E-02
44GO:0005623: cell4.16E-02
45GO:0005778: peroxisomal membrane4.93E-02
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Gene type



Gene DE type