GO Enrichment Analysis of Co-expressed Genes with
AT4G15955
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006903: vesicle targeting | 0.00E+00 |
| 2 | GO:2000117: negative regulation of cysteine-type endopeptidase activity | 0.00E+00 |
| 3 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 4 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 5 | GO:0006511: ubiquitin-dependent protein catabolic process | 5.17E-10 |
| 6 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 4.14E-07 |
| 7 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.83E-05 |
| 8 | GO:0051603: proteolysis involved in cellular protein catabolic process | 9.36E-05 |
| 9 | GO:0006102: isocitrate metabolic process | 1.25E-04 |
| 10 | GO:0006491: N-glycan processing | 1.25E-04 |
| 11 | GO:0030163: protein catabolic process | 1.49E-04 |
| 12 | GO:0019628: urate catabolic process | 1.67E-04 |
| 13 | GO:0010421: hydrogen peroxide-mediated programmed cell death | 1.67E-04 |
| 14 | GO:0006144: purine nucleobase metabolic process | 1.67E-04 |
| 15 | GO:0006499: N-terminal protein myristoylation | 3.42E-04 |
| 16 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 3.78E-04 |
| 17 | GO:0006568: tryptophan metabolic process | 3.78E-04 |
| 18 | GO:0009805: coumarin biosynthetic process | 3.78E-04 |
| 19 | GO:0031124: mRNA 3'-end processing | 3.78E-04 |
| 20 | GO:0051645: Golgi localization | 3.78E-04 |
| 21 | GO:0010372: positive regulation of gibberellin biosynthetic process | 3.78E-04 |
| 22 | GO:0060151: peroxisome localization | 3.78E-04 |
| 23 | GO:0015031: protein transport | 4.12E-04 |
| 24 | GO:0006099: tricarboxylic acid cycle | 4.34E-04 |
| 25 | GO:0007031: peroxisome organization | 5.19E-04 |
| 26 | GO:0006517: protein deglycosylation | 6.19E-04 |
| 27 | GO:0010498: proteasomal protein catabolic process | 6.19E-04 |
| 28 | GO:0051646: mitochondrion localization | 6.19E-04 |
| 29 | GO:0010359: regulation of anion channel activity | 6.19E-04 |
| 30 | GO:0090436: leaf pavement cell development | 6.19E-04 |
| 31 | GO:0090630: activation of GTPase activity | 6.19E-04 |
| 32 | GO:0002679: respiratory burst involved in defense response | 8.83E-04 |
| 33 | GO:0006612: protein targeting to membrane | 8.83E-04 |
| 34 | GO:0006893: Golgi to plasma membrane transport | 8.83E-04 |
| 35 | GO:0010255: glucose mediated signaling pathway | 8.83E-04 |
| 36 | GO:0071786: endoplasmic reticulum tubular network organization | 8.83E-04 |
| 37 | GO:0042147: retrograde transport, endosome to Golgi | 1.07E-03 |
| 38 | GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter | 1.17E-03 |
| 39 | GO:0010222: stem vascular tissue pattern formation | 1.17E-03 |
| 40 | GO:0010363: regulation of plant-type hypersensitive response | 1.17E-03 |
| 41 | GO:0009823: cytokinin catabolic process | 1.48E-03 |
| 42 | GO:0006564: L-serine biosynthetic process | 1.48E-03 |
| 43 | GO:0005513: detection of calcium ion | 1.48E-03 |
| 44 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 1.48E-03 |
| 45 | GO:0001731: formation of translation preinitiation complex | 1.83E-03 |
| 46 | GO:0048827: phyllome development | 1.83E-03 |
| 47 | GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation | 1.83E-03 |
| 48 | GO:0043248: proteasome assembly | 1.83E-03 |
| 49 | GO:0009612: response to mechanical stimulus | 2.19E-03 |
| 50 | GO:0048280: vesicle fusion with Golgi apparatus | 2.19E-03 |
| 51 | GO:0009554: megasporogenesis | 2.19E-03 |
| 52 | GO:0046686: response to cadmium ion | 2.32E-03 |
| 53 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.56E-03 |
| 54 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 2.99E-03 |
| 55 | GO:0048766: root hair initiation | 2.99E-03 |
| 56 | GO:0006402: mRNA catabolic process | 2.99E-03 |
| 57 | GO:0050821: protein stabilization | 2.99E-03 |
| 58 | GO:0009699: phenylpropanoid biosynthetic process | 3.41E-03 |
| 59 | GO:0009932: cell tip growth | 3.41E-03 |
| 60 | GO:0060321: acceptance of pollen | 3.41E-03 |
| 61 | GO:0006367: transcription initiation from RNA polymerase II promoter | 3.41E-03 |
| 62 | GO:0046685: response to arsenic-containing substance | 3.86E-03 |
| 63 | GO:0006379: mRNA cleavage | 3.86E-03 |
| 64 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 4.33E-03 |
| 65 | GO:0006896: Golgi to vacuole transport | 4.81E-03 |
| 66 | GO:0043069: negative regulation of programmed cell death | 4.81E-03 |
| 67 | GO:0048765: root hair cell differentiation | 5.32E-03 |
| 68 | GO:0006378: mRNA polyadenylation | 5.32E-03 |
| 69 | GO:0046856: phosphatidylinositol dephosphorylation | 5.32E-03 |
| 70 | GO:0043085: positive regulation of catalytic activity | 5.32E-03 |
| 71 | GO:0009846: pollen germination | 5.79E-03 |
| 72 | GO:0006790: sulfur compound metabolic process | 5.84E-03 |
| 73 | GO:0016925: protein sumoylation | 5.84E-03 |
| 74 | GO:0006890: retrograde vesicle-mediated transport, Golgi to ER | 5.84E-03 |
| 75 | GO:0030048: actin filament-based movement | 6.38E-03 |
| 76 | GO:0048467: gynoecium development | 6.93E-03 |
| 77 | GO:0034605: cellular response to heat | 6.93E-03 |
| 78 | GO:0006446: regulation of translational initiation | 6.93E-03 |
| 79 | GO:0046854: phosphatidylinositol phosphorylation | 7.50E-03 |
| 80 | GO:0010053: root epidermal cell differentiation | 7.50E-03 |
| 81 | GO:0000162: tryptophan biosynthetic process | 8.10E-03 |
| 82 | GO:0010187: negative regulation of seed germination | 8.70E-03 |
| 83 | GO:0006406: mRNA export from nucleus | 8.70E-03 |
| 84 | GO:0010431: seed maturation | 9.97E-03 |
| 85 | GO:0015992: proton transport | 9.97E-03 |
| 86 | GO:0009651: response to salt stress | 1.04E-02 |
| 87 | GO:0019748: secondary metabolic process | 1.06E-02 |
| 88 | GO:0010227: floral organ abscission | 1.13E-02 |
| 89 | GO:0009561: megagametogenesis | 1.20E-02 |
| 90 | GO:0009306: protein secretion | 1.20E-02 |
| 91 | GO:0051028: mRNA transport | 1.27E-02 |
| 92 | GO:0010154: fruit development | 1.41E-02 |
| 93 | GO:0006662: glycerol ether metabolic process | 1.41E-02 |
| 94 | GO:0006623: protein targeting to vacuole | 1.56E-02 |
| 95 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.64E-02 |
| 96 | GO:0009630: gravitropism | 1.72E-02 |
| 97 | GO:0031047: gene silencing by RNA | 1.72E-02 |
| 98 | GO:0010090: trichome morphogenesis | 1.80E-02 |
| 99 | GO:0009617: response to bacterium | 1.83E-02 |
| 100 | GO:0006904: vesicle docking involved in exocytosis | 1.96E-02 |
| 101 | GO:0009555: pollen development | 1.97E-02 |
| 102 | GO:0016579: protein deubiquitination | 2.04E-02 |
| 103 | GO:0009816: defense response to bacterium, incompatible interaction | 2.22E-02 |
| 104 | GO:0010411: xyloglucan metabolic process | 2.39E-02 |
| 105 | GO:0006950: response to stress | 2.39E-02 |
| 106 | GO:0016567: protein ubiquitination | 2.53E-02 |
| 107 | GO:0009817: defense response to fungus, incompatible interaction | 2.57E-02 |
| 108 | GO:0048767: root hair elongation | 2.67E-02 |
| 109 | GO:0010043: response to zinc ion | 2.85E-02 |
| 110 | GO:0010119: regulation of stomatal movement | 2.85E-02 |
| 111 | GO:0000724: double-strand break repair via homologous recombination | 2.95E-02 |
| 112 | GO:0009867: jasmonic acid mediated signaling pathway | 3.05E-02 |
| 113 | GO:0045087: innate immune response | 3.05E-02 |
| 114 | GO:0016192: vesicle-mediated transport | 3.10E-02 |
| 115 | GO:0034599: cellular response to oxidative stress | 3.14E-02 |
| 116 | GO:0006887: exocytosis | 3.44E-02 |
| 117 | GO:0006886: intracellular protein transport | 3.64E-02 |
| 118 | GO:0042546: cell wall biogenesis | 3.75E-02 |
| 119 | GO:0031347: regulation of defense response | 4.18E-02 |
| 120 | GO:0055114: oxidation-reduction process | 4.28E-02 |
| 121 | GO:0006629: lipid metabolic process | 4.34E-02 |
| 122 | GO:0006486: protein glycosylation | 4.51E-02 |
| 123 | GO:0006397: mRNA processing | 4.52E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 2 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 3 | GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group | 0.00E+00 |
| 4 | GO:0004846: urate oxidase activity | 0.00E+00 |
| 5 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 6 | GO:0004298: threonine-type endopeptidase activity | 1.60E-10 |
| 7 | GO:0036402: proteasome-activating ATPase activity | 4.14E-07 |
| 8 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 1.16E-05 |
| 9 | GO:0008233: peptidase activity | 2.00E-05 |
| 10 | GO:0017025: TBP-class protein binding | 2.14E-05 |
| 11 | GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity | 1.67E-04 |
| 12 | GO:0048037: cofactor binding | 1.67E-04 |
| 13 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.61E-04 |
| 14 | GO:0052739: phosphatidylserine 1-acylhydrolase activity | 3.78E-04 |
| 15 | GO:0051879: Hsp90 protein binding | 3.78E-04 |
| 16 | GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity | 3.78E-04 |
| 17 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.78E-04 |
| 18 | GO:0008805: carbon-monoxide oxygenase activity | 3.78E-04 |
| 19 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.78E-04 |
| 20 | GO:0051731: polynucleotide 5'-hydroxyl-kinase activity | 3.78E-04 |
| 21 | GO:0030742: GTP-dependent protein binding | 3.78E-04 |
| 22 | GO:0004640: phosphoribosylanthranilate isomerase activity | 3.78E-04 |
| 23 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.78E-04 |
| 24 | GO:0004190: aspartic-type endopeptidase activity | 5.19E-04 |
| 25 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 6.19E-04 |
| 26 | GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | 8.83E-04 |
| 27 | GO:0070628: proteasome binding | 1.17E-03 |
| 28 | GO:0008022: protein C-terminus binding | 1.17E-03 |
| 29 | GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity | 1.17E-03 |
| 30 | GO:0008374: O-acyltransferase activity | 1.48E-03 |
| 31 | GO:0019139: cytokinin dehydrogenase activity | 1.48E-03 |
| 32 | GO:0017137: Rab GTPase binding | 1.48E-03 |
| 33 | GO:0031386: protein tag | 1.48E-03 |
| 34 | GO:0004518: nuclease activity | 1.62E-03 |
| 35 | GO:0031593: polyubiquitin binding | 1.83E-03 |
| 36 | GO:0004559: alpha-mannosidase activity | 2.19E-03 |
| 37 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.19E-03 |
| 38 | GO:0004656: procollagen-proline 4-dioxygenase activity | 2.19E-03 |
| 39 | GO:0008970: phosphatidylcholine 1-acylhydrolase activity | 3.41E-03 |
| 40 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.58E-03 |
| 41 | GO:0016887: ATPase activity | 3.82E-03 |
| 42 | GO:0004743: pyruvate kinase activity | 4.33E-03 |
| 43 | GO:0030955: potassium ion binding | 4.33E-03 |
| 44 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 4.81E-03 |
| 45 | GO:0008047: enzyme activator activity | 4.81E-03 |
| 46 | GO:0005198: structural molecule activity | 5.18E-03 |
| 47 | GO:0008559: xenobiotic-transporting ATPase activity | 5.32E-03 |
| 48 | GO:0051287: NAD binding | 5.58E-03 |
| 49 | GO:0031625: ubiquitin protein ligase binding | 6.87E-03 |
| 50 | GO:0003774: motor activity | 6.93E-03 |
| 51 | GO:0008131: primary amine oxidase activity | 6.93E-03 |
| 52 | GO:0005524: ATP binding | 8.23E-03 |
| 53 | GO:0031418: L-ascorbic acid binding | 8.70E-03 |
| 54 | GO:0043130: ubiquitin binding | 8.70E-03 |
| 55 | GO:0005516: calmodulin binding | 8.72E-03 |
| 56 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 9.97E-03 |
| 57 | GO:0047134: protein-disulfide reductase activity | 1.27E-02 |
| 58 | GO:0008565: protein transporter activity | 1.33E-02 |
| 59 | GO:0004791: thioredoxin-disulfide reductase activity | 1.49E-02 |
| 60 | GO:0004872: receptor activity | 1.56E-02 |
| 61 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 1.64E-02 |
| 62 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.64E-02 |
| 63 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.80E-02 |
| 64 | GO:0008237: metallopeptidase activity | 1.96E-02 |
| 65 | GO:0000166: nucleotide binding | 1.97E-02 |
| 66 | GO:0016597: amino acid binding | 2.04E-02 |
| 67 | GO:0051213: dioxygenase activity | 2.13E-02 |
| 68 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.30E-02 |
| 69 | GO:0000287: magnesium ion binding | 2.33E-02 |
| 70 | GO:0004683: calmodulin-dependent protein kinase activity | 2.39E-02 |
| 71 | GO:0005096: GTPase activator activity | 2.67E-02 |
| 72 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.85E-02 |
| 73 | GO:0003746: translation elongation factor activity | 3.05E-02 |
| 74 | GO:0061630: ubiquitin protein ligase activity | 3.10E-02 |
| 75 | GO:0000149: SNARE binding | 3.24E-02 |
| 76 | GO:0005484: SNAP receptor activity | 3.65E-02 |
| 77 | GO:0005525: GTP binding | 3.66E-02 |
| 78 | GO:0016787: hydrolase activity | 4.20E-02 |
| 79 | GO:0005509: calcium ion binding | 4.28E-02 |
| 80 | GO:0016298: lipase activity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000502: proteasome complex | 1.97E-17 |
| 2 | GO:0005839: proteasome core complex | 1.45E-12 |
| 3 | GO:0031597: cytosolic proteasome complex | 7.29E-07 |
| 4 | GO:0031595: nuclear proteasome complex | 1.19E-06 |
| 5 | GO:0008540: proteasome regulatory particle, base subcomplex | 5.17E-06 |
| 6 | GO:0005829: cytosol | 8.76E-06 |
| 7 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 1.25E-04 |
| 8 | GO:0019773: proteasome core complex, alpha-subunit complex | 1.56E-04 |
| 9 | GO:0009510: plasmodesmatal desmotubule | 1.67E-04 |
| 10 | GO:0016442: RISC complex | 1.67E-04 |
| 11 | GO:0005783: endoplasmic reticulum | 2.88E-04 |
| 12 | GO:0008541: proteasome regulatory particle, lid subcomplex | 3.13E-04 |
| 13 | GO:0048471: perinuclear region of cytoplasm | 3.13E-04 |
| 14 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 6.19E-04 |
| 15 | GO:0030132: clathrin coat of coated pit | 6.19E-04 |
| 16 | GO:0005849: mRNA cleavage factor complex | 8.83E-04 |
| 17 | GO:0071782: endoplasmic reticulum tubular network | 8.83E-04 |
| 18 | GO:0030660: Golgi-associated vesicle membrane | 1.17E-03 |
| 19 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 1.17E-03 |
| 20 | GO:0030904: retromer complex | 1.83E-03 |
| 21 | GO:0030140: trans-Golgi network transport vesicle | 1.83E-03 |
| 22 | GO:0016282: eukaryotic 43S preinitiation complex | 1.83E-03 |
| 23 | GO:0033290: eukaryotic 48S preinitiation complex | 2.19E-03 |
| 24 | GO:0005802: trans-Golgi network | 2.45E-03 |
| 25 | GO:0012507: ER to Golgi transport vesicle membrane | 2.99E-03 |
| 26 | GO:0031982: vesicle | 2.99E-03 |
| 27 | GO:0000325: plant-type vacuole | 3.27E-03 |
| 28 | GO:0005774: vacuolar membrane | 3.73E-03 |
| 29 | GO:0010494: cytoplasmic stress granule | 3.86E-03 |
| 30 | GO:0031090: organelle membrane | 3.86E-03 |
| 31 | GO:0031902: late endosome membrane | 4.26E-03 |
| 32 | GO:0016459: myosin complex | 4.81E-03 |
| 33 | GO:0005765: lysosomal membrane | 5.32E-03 |
| 34 | GO:0005635: nuclear envelope | 6.65E-03 |
| 35 | GO:0005737: cytoplasm | 7.46E-03 |
| 36 | GO:0005789: endoplasmic reticulum membrane | 7.75E-03 |
| 37 | GO:0005773: vacuole | 9.34E-03 |
| 38 | GO:0005768: endosome | 1.17E-02 |
| 39 | GO:0005770: late endosome | 1.41E-02 |
| 40 | GO:0009504: cell plate | 1.56E-02 |
| 41 | GO:0016592: mediator complex | 1.72E-02 |
| 42 | GO:0000145: exocyst | 1.72E-02 |
| 43 | GO:0032580: Golgi cisterna membrane | 1.88E-02 |
| 44 | GO:0005778: peroxisomal membrane | 1.96E-02 |
| 45 | GO:0000932: P-body | 2.13E-02 |
| 46 | GO:0005788: endoplasmic reticulum lumen | 2.22E-02 |
| 47 | GO:0005777: peroxisome | 2.34E-02 |
| 48 | GO:0005794: Golgi apparatus | 2.46E-02 |
| 49 | GO:0019005: SCF ubiquitin ligase complex | 2.57E-02 |
| 50 | GO:0005643: nuclear pore | 2.57E-02 |
| 51 | GO:0031201: SNARE complex | 3.44E-02 |
| 52 | GO:0005618: cell wall | 3.91E-02 |
| 53 | GO:0005856: cytoskeleton | 3.96E-02 |
| 54 | GO:0031966: mitochondrial membrane | 4.29E-02 |