Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G15510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009069: serine family amino acid metabolic process0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
6GO:0070178: D-serine metabolic process0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0017038: protein import0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:0042820: vitamin B6 catabolic process0.00E+00
13GO:0018023: peptidyl-lysine trimethylation0.00E+00
14GO:0042371: vitamin K biosynthetic process0.00E+00
15GO:0015979: photosynthesis3.35E-07
16GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.92E-07
17GO:0032502: developmental process5.13E-06
18GO:1902326: positive regulation of chlorophyll biosynthetic process8.28E-06
19GO:0032544: plastid translation2.77E-05
20GO:0009773: photosynthetic electron transport in photosystem I8.14E-05
21GO:0006021: inositol biosynthetic process1.09E-04
22GO:0010207: photosystem II assembly1.47E-04
23GO:0010236: plastoquinone biosynthetic process1.68E-04
24GO:0010190: cytochrome b6f complex assembly2.39E-04
25GO:1901259: chloroplast rRNA processing3.21E-04
26GO:0009658: chloroplast organization3.59E-04
27GO:0005991: trehalose metabolic process4.32E-04
28GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.32E-04
29GO:0000476: maturation of 4.5S rRNA4.32E-04
30GO:0009443: pyridoxal 5'-phosphate salvage4.32E-04
31GO:0000967: rRNA 5'-end processing4.32E-04
32GO:1904966: positive regulation of vitamin E biosynthetic process4.32E-04
33GO:0006659: phosphatidylserine biosynthetic process4.32E-04
34GO:1904964: positive regulation of phytol biosynthetic process4.32E-04
35GO:0010024: phytochromobilin biosynthetic process9.33E-04
36GO:0034470: ncRNA processing9.33E-04
37GO:0010275: NAD(P)H dehydrogenase complex assembly9.33E-04
38GO:0034755: iron ion transmembrane transport9.33E-04
39GO:0018026: peptidyl-lysine monomethylation9.33E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process9.33E-04
41GO:0019684: photosynthesis, light reaction1.19E-03
42GO:0010027: thylakoid membrane organization1.22E-03
43GO:0016024: CDP-diacylglycerol biosynthetic process1.36E-03
44GO:0015995: chlorophyll biosynthetic process1.50E-03
45GO:0006954: inflammatory response1.52E-03
46GO:0090391: granum assembly1.52E-03
47GO:0006788: heme oxidation1.52E-03
48GO:0005977: glycogen metabolic process1.52E-03
49GO:0006166: purine ribonucleoside salvage2.19E-03
50GO:0006020: inositol metabolic process2.19E-03
51GO:0051085: chaperone mediated protein folding requiring cofactor2.19E-03
52GO:0009052: pentose-phosphate shunt, non-oxidative branch2.19E-03
53GO:0010731: protein glutathionylation2.19E-03
54GO:0006168: adenine salvage2.19E-03
55GO:0006986: response to unfolded protein2.19E-03
56GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.19E-03
57GO:0061077: chaperone-mediated protein folding2.94E-03
58GO:0010109: regulation of photosynthesis2.95E-03
59GO:0019464: glycine decarboxylation via glycine cleavage system2.95E-03
60GO:0009765: photosynthesis, light harvesting2.95E-03
61GO:0006109: regulation of carbohydrate metabolic process2.95E-03
62GO:0015994: chlorophyll metabolic process2.95E-03
63GO:0010107: potassium ion import2.95E-03
64GO:0006546: glycine catabolic process2.95E-03
65GO:0010021: amylopectin biosynthetic process2.95E-03
66GO:0009735: response to cytokinin3.18E-03
67GO:0010114: response to red light3.21E-03
68GO:0006730: one-carbon metabolic process3.22E-03
69GO:0044209: AMP salvage3.78E-03
70GO:0006465: signal peptide processing3.78E-03
71GO:0016120: carotene biosynthetic process3.78E-03
72GO:0098719: sodium ion import across plasma membrane3.78E-03
73GO:0006564: L-serine biosynthetic process3.78E-03
74GO:0006810: transport4.47E-03
75GO:0006751: glutathione catabolic process4.68E-03
76GO:0042549: photosystem II stabilization4.68E-03
77GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.68E-03
78GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.68E-03
79GO:0006655: phosphatidylglycerol biosynthetic process4.68E-03
80GO:0032973: amino acid export4.68E-03
81GO:0000741: karyogamy4.68E-03
82GO:0009228: thiamine biosynthetic process4.68E-03
83GO:0046855: inositol phosphate dephosphorylation4.68E-03
84GO:0006563: L-serine metabolic process4.68E-03
85GO:0009646: response to absence of light5.19E-03
86GO:0009791: post-embryonic development5.57E-03
87GO:0019252: starch biosynthetic process5.57E-03
88GO:0009955: adaxial/abaxial pattern specification5.64E-03
89GO:0042372: phylloquinone biosynthetic process5.64E-03
90GO:0042026: protein refolding5.64E-03
91GO:0006458: 'de novo' protein folding5.64E-03
92GO:0048280: vesicle fusion with Golgi apparatus5.64E-03
93GO:0010189: vitamin E biosynthetic process5.64E-03
94GO:0009772: photosynthetic electron transport in photosystem II6.67E-03
95GO:0043090: amino acid import6.67E-03
96GO:0009769: photosynthesis, light harvesting in photosystem II6.67E-03
97GO:0009645: response to low light intensity stimulus6.67E-03
98GO:0055114: oxidation-reduction process7.05E-03
99GO:0007155: cell adhesion7.76E-03
100GO:0042255: ribosome assembly7.76E-03
101GO:0006353: DNA-templated transcription, termination7.76E-03
102GO:0009690: cytokinin metabolic process7.76E-03
103GO:0070413: trehalose metabolism in response to stress7.76E-03
104GO:0006605: protein targeting7.76E-03
105GO:0010078: maintenance of root meristem identity7.76E-03
106GO:0055075: potassium ion homeostasis7.76E-03
107GO:0009742: brassinosteroid mediated signaling pathway7.95E-03
108GO:0071482: cellular response to light stimulus8.91E-03
109GO:0009657: plastid organization8.91E-03
110GO:0043562: cellular response to nitrogen levels8.91E-03
111GO:0017004: cytochrome complex assembly8.91E-03
112GO:0009821: alkaloid biosynthetic process1.01E-02
113GO:0080144: amino acid homeostasis1.01E-02
114GO:0090333: regulation of stomatal closure1.01E-02
115GO:0046916: cellular transition metal ion homeostasis1.01E-02
116GO:0018298: protein-chromophore linkage1.13E-02
117GO:0051453: regulation of intracellular pH1.14E-02
118GO:0005982: starch metabolic process1.14E-02
119GO:0006779: porphyrin-containing compound biosynthetic process1.14E-02
120GO:0006949: syncytium formation1.27E-02
121GO:0006896: Golgi to vacuole transport1.27E-02
122GO:0006782: protoporphyrinogen IX biosynthetic process1.27E-02
123GO:0009641: shade avoidance1.27E-02
124GO:0006413: translational initiation1.36E-02
125GO:0009684: indoleacetic acid biosynthetic process1.41E-02
126GO:0009089: lysine biosynthetic process via diaminopimelate1.41E-02
127GO:0043085: positive regulation of catalytic activity1.41E-02
128GO:0006415: translational termination1.41E-02
129GO:0006879: cellular iron ion homeostasis1.41E-02
130GO:0032259: methylation1.52E-02
131GO:0006790: sulfur compound metabolic process1.55E-02
132GO:0030001: metal ion transport1.64E-02
133GO:0009767: photosynthetic electron transport chain1.70E-02
134GO:0010588: cotyledon vascular tissue pattern formation1.70E-02
135GO:0048467: gynoecium development1.85E-02
136GO:0010143: cutin biosynthetic process1.85E-02
137GO:0019853: L-ascorbic acid biosynthetic process2.01E-02
138GO:0046854: phosphatidylinositol phosphorylation2.01E-02
139GO:0006855: drug transmembrane transport2.17E-02
140GO:0005992: trehalose biosynthetic process2.33E-02
141GO:0006418: tRNA aminoacylation for protein translation2.50E-02
142GO:0009768: photosynthesis, light harvesting in photosystem I2.50E-02
143GO:0051603: proteolysis involved in cellular protein catabolic process2.60E-02
144GO:0019915: lipid storage2.68E-02
145GO:0009269: response to desiccation2.68E-02
146GO:0030245: cellulose catabolic process2.85E-02
147GO:0016226: iron-sulfur cluster assembly2.85E-02
148GO:0006012: galactose metabolic process3.04E-02
149GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.04E-02
150GO:0009686: gibberellin biosynthetic process3.04E-02
151GO:0048367: shoot system development3.06E-02
152GO:0009561: megagametogenesis3.22E-02
153GO:0009306: protein secretion3.22E-02
154GO:0080167: response to karrikin3.37E-02
155GO:0016117: carotenoid biosynthetic process3.41E-02
156GO:0042147: retrograde transport, endosome to Golgi3.41E-02
157GO:0080022: primary root development3.61E-02
158GO:0000413: protein peptidyl-prolyl isomerization3.61E-02
159GO:0010087: phloem or xylem histogenesis3.61E-02
160GO:0009741: response to brassinosteroid3.81E-02
161GO:0010268: brassinosteroid homeostasis3.81E-02
162GO:0009958: positive gravitropism3.81E-02
163GO:0006885: regulation of pH3.81E-02
164GO:0006662: glycerol ether metabolic process3.81E-02
165GO:0010197: polar nucleus fusion3.81E-02
166GO:0010182: sugar mediated signaling pathway3.81E-02
167GO:0048544: recognition of pollen4.01E-02
168GO:0006814: sodium ion transport4.01E-02
169GO:0006623: protein targeting to vacuole4.21E-02
170GO:0048825: cotyledon development4.21E-02
171GO:0008654: phospholipid biosynthetic process4.21E-02
172GO:0009851: auxin biosynthetic process4.21E-02
173GO:0016132: brassinosteroid biosynthetic process4.42E-02
174GO:0006891: intra-Golgi vesicle-mediated transport4.42E-02
175GO:0010090: trichome morphogenesis4.85E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
4GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0030378: serine racemase activity0.00E+00
7GO:0003941: L-serine ammonia-lyase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
10GO:0008721: D-serine ammonia-lyase activity0.00E+00
11GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
12GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
13GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
14GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.13E-06
15GO:0019843: rRNA binding6.22E-06
16GO:0005528: FK506 binding2.35E-04
17GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity4.32E-04
18GO:0051777: ent-kaurenoate oxidase activity4.32E-04
19GO:0004856: xylulokinase activity4.32E-04
20GO:0005080: protein kinase C binding4.32E-04
21GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.32E-04
22GO:0004033: aldo-keto reductase (NADP) activity5.18E-04
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.79E-04
24GO:0048038: quinone binding7.72E-04
25GO:0003839: gamma-glutamylcyclotransferase activity9.33E-04
26GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.33E-04
27GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.33E-04
28GO:0004617: phosphoglycerate dehydrogenase activity9.33E-04
29GO:0004047: aminomethyltransferase activity9.33E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity9.33E-04
31GO:0033201: alpha-1,4-glucan synthase activity9.33E-04
32GO:0008934: inositol monophosphate 1-phosphatase activity9.33E-04
33GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.33E-04
34GO:0016630: protochlorophyllide reductase activity9.33E-04
35GO:0052833: inositol monophosphate 4-phosphatase activity9.33E-04
36GO:0019156: isoamylase activity9.33E-04
37GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.33E-04
38GO:0004512: inositol-3-phosphate synthase activity9.33E-04
39GO:0047746: chlorophyllase activity9.33E-04
40GO:0051082: unfolded protein binding1.44E-03
41GO:0015462: ATPase-coupled protein transmembrane transporter activity1.52E-03
42GO:0004373: glycogen (starch) synthase activity1.52E-03
43GO:0002161: aminoacyl-tRNA editing activity1.52E-03
44GO:0004751: ribose-5-phosphate isomerase activity1.52E-03
45GO:0045174: glutathione dehydrogenase (ascorbate) activity1.52E-03
46GO:0070402: NADPH binding1.52E-03
47GO:0031072: heat shock protein binding1.55E-03
48GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.19E-03
49GO:0004375: glycine dehydrogenase (decarboxylating) activity2.19E-03
50GO:0003999: adenine phosphoribosyltransferase activity2.19E-03
51GO:0016149: translation release factor activity, codon specific2.19E-03
52GO:0016851: magnesium chelatase activity2.19E-03
53GO:0004045: aminoacyl-tRNA hydrolase activity2.95E-03
54GO:0045430: chalcone isomerase activity2.95E-03
55GO:0009011: starch synthase activity2.95E-03
56GO:0043495: protein anchor2.95E-03
57GO:0004392: heme oxygenase (decyclizing) activity2.95E-03
58GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.95E-03
59GO:0004659: prenyltransferase activity2.95E-03
60GO:0016279: protein-lysine N-methyltransferase activity2.95E-03
61GO:0016846: carbon-sulfur lyase activity3.78E-03
62GO:0003959: NADPH dehydrogenase activity3.78E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor3.78E-03
64GO:0003727: single-stranded RNA binding3.82E-03
65GO:0004556: alpha-amylase activity4.68E-03
66GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.68E-03
67GO:0004462: lactoylglutathione lyase activity4.68E-03
68GO:0015081: sodium ion transmembrane transporter activity4.68E-03
69GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.68E-03
70GO:0008200: ion channel inhibitor activity4.68E-03
71GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.64E-03
72GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.64E-03
73GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.64E-03
74GO:0008168: methyltransferase activity6.13E-03
75GO:0019899: enzyme binding6.67E-03
76GO:0016791: phosphatase activity7.24E-03
77GO:0008135: translation factor activity, RNA binding8.91E-03
78GO:0046914: transition metal ion binding8.91E-03
79GO:0016168: chlorophyll binding9.15E-03
80GO:0003747: translation release factor activity1.01E-02
81GO:0005381: iron ion transmembrane transporter activity1.14E-02
82GO:0016844: strictosidine synthase activity1.14E-02
83GO:0015238: drug transmembrane transporter activity1.19E-02
84GO:0008047: enzyme activator activity1.27E-02
85GO:0015020: glucuronosyltransferase activity1.27E-02
86GO:0044183: protein binding involved in protein folding1.41E-02
87GO:0047372: acylglycerol lipase activity1.41E-02
88GO:0015386: potassium:proton antiporter activity1.41E-02
89GO:0008559: xenobiotic-transporting ATPase activity1.41E-02
90GO:0008378: galactosyltransferase activity1.55E-02
91GO:0000049: tRNA binding1.55E-02
92GO:0003725: double-stranded RNA binding1.70E-02
93GO:0004022: alcohol dehydrogenase (NAD) activity1.70E-02
94GO:0004089: carbonate dehydratase activity1.70E-02
95GO:0009055: electron carrier activity1.80E-02
96GO:0003743: translation initiation factor activity1.81E-02
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.85E-02
98GO:0008266: poly(U) RNA binding1.85E-02
99GO:0004185: serine-type carboxypeptidase activity1.86E-02
100GO:0051537: 2 iron, 2 sulfur cluster binding2.01E-02
101GO:0035091: phosphatidylinositol binding2.01E-02
102GO:0031409: pigment binding2.17E-02
103GO:0003735: structural constituent of ribosome2.27E-02
104GO:0051536: iron-sulfur cluster binding2.33E-02
105GO:0004857: enzyme inhibitor activity2.33E-02
106GO:0051087: chaperone binding2.50E-02
107GO:0043424: protein histidine kinase binding2.50E-02
108GO:0016491: oxidoreductase activity2.53E-02
109GO:0003690: double-stranded DNA binding2.60E-02
110GO:0016788: hydrolase activity, acting on ester bonds2.64E-02
111GO:0022891: substrate-specific transmembrane transporter activity3.04E-02
112GO:0030570: pectate lyase activity3.04E-02
113GO:0008810: cellulase activity3.04E-02
114GO:0004812: aminoacyl-tRNA ligase activity3.41E-02
115GO:0047134: protein-disulfide reductase activity3.41E-02
116GO:0005509: calcium ion binding3.55E-02
117GO:0016746: transferase activity, transferring acyl groups3.68E-02
118GO:0004791: thioredoxin-disulfide reductase activity4.01E-02
119GO:0016829: lyase activity4.82E-02
120GO:0015385: sodium:proton antiporter activity4.85E-02
121GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.85E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast2.99E-45
3GO:0009535: chloroplast thylakoid membrane1.07E-27
4GO:0009570: chloroplast stroma6.39E-23
5GO:0009579: thylakoid1.21E-17
6GO:0009543: chloroplast thylakoid lumen1.27E-13
7GO:0009941: chloroplast envelope5.86E-13
8GO:0031977: thylakoid lumen3.38E-10
9GO:0009534: chloroplast thylakoid8.14E-09
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.07E-09
11GO:0009654: photosystem II oxygen evolving complex4.64E-07
12GO:0019898: extrinsic component of membrane6.85E-05
13GO:0031969: chloroplast membrane1.16E-04
14GO:0005787: signal peptidase complex4.32E-04
15GO:0009344: nitrite reductase complex [NAD(P)H]4.32E-04
16GO:0009547: plastid ribosome4.32E-04
17GO:0005840: ribosome6.71E-04
18GO:0009523: photosystem II7.07E-04
19GO:0010007: magnesium chelatase complex1.52E-03
20GO:0033281: TAT protein transport complex1.52E-03
21GO:0009508: plastid chromosome1.55E-03
22GO:0005960: glycine cleavage complex2.19E-03
23GO:0042651: thylakoid membrane2.68E-03
24GO:0009517: PSII associated light-harvesting complex II2.95E-03
25GO:0009522: photosystem I5.19E-03
26GO:0009533: chloroplast stromal thylakoid6.67E-03
27GO:0010319: stromule7.70E-03
28GO:0009295: nucleoid7.70E-03
29GO:0009501: amyloplast7.76E-03
30GO:0012507: ER to Golgi transport vesicle membrane7.76E-03
31GO:0009539: photosystem II reaction center8.91E-03
32GO:0005763: mitochondrial small ribosomal subunit1.01E-02
33GO:0000311: plastid large ribosomal subunit1.55E-02
34GO:0030095: chloroplast photosystem II1.85E-02
35GO:0030076: light-harvesting complex2.01E-02
36GO:0016020: membrane2.22E-02
37GO:0009536: plastid2.22E-02
38GO:0016021: integral component of membrane4.03E-02
39GO:0010287: plastoglobule4.23E-02
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Gene type



Gene DE type