co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G13640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0009733: response to auxin	1.02E-07
3	GO:0009734: auxin-activated signaling pathway	3.84E-07
4	GO:0046620: regulation of organ growth	7.53E-06
5	GO:0030488: tRNA methylation	1.78E-04
6	GO:0009686: gibberellin biosynthetic process	1.82E-04
7	GO:0042759: long-chain fatty acid biosynthetic process	2.94E-04
8	GO:0015904: tetracycline transport	2.94E-04
9	GO:0000025: maltose catabolic process	2.94E-04
10	GO:0030198: extracellular matrix organization	2.94E-04
11	GO:0046520: sphingoid biosynthetic process	2.94E-04
12	GO:0010480: microsporocyte differentiation	2.94E-04
13	GO:0009786: regulation of asymmetric cell division	6.45E-04
14	GO:0031648: protein destabilization	6.45E-04
15	GO:2000123: positive regulation of stomatal complex development	6.45E-04
16	GO:0080005: photosystem stoichiometry adjustment	6.45E-04
17	GO:0019388: galactose catabolic process	6.45E-04
18	GO:1900033: negative regulation of trichome patterning	6.45E-04
19	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.88E-04
20	GO:0009767: photosynthetic electron transport chain	8.98E-04
21	GO:0010102: lateral root morphogenesis	8.98E-04
22	GO:0006006: glucose metabolic process	8.98E-04
23	GO:0048575: short-day photoperiodism, flowering	1.04E-03
24	GO:0090506: axillary shoot meristem initiation	1.04E-03
25	GO:0040008: regulation of growth	1.30E-03
26	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.50E-03
27	GO:0009590: detection of gravity	1.50E-03
28	GO:0009926: auxin polar transport	1.56E-03
29	GO:0016042: lipid catabolic process	1.57E-03
30	GO:0048629: trichome patterning	2.01E-03
31	GO:0009765: photosynthesis, light harvesting	2.01E-03
32	GO:2000038: regulation of stomatal complex development	2.01E-03
33	GO:0042991: transcription factor import into nucleus	2.01E-03
34	GO:0048497: maintenance of floral organ identity	2.56E-03
35	GO:0016123: xanthophyll biosynthetic process	2.56E-03
36	GO:0010375: stomatal complex patterning	2.56E-03
37	GO:0016120: carotene biosynthetic process	2.56E-03
38	GO:0045487: gibberellin catabolic process	2.56E-03
39	GO:0010405: arabinogalactan protein metabolic process	3.16E-03
40	GO:0042549: photosystem II stabilization	3.16E-03
41	GO:0009959: negative gravitropism	3.16E-03
42	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.16E-03
43	GO:0009913: epidermal cell differentiation	3.16E-03
44	GO:1902456: regulation of stomatal opening	3.16E-03
45	GO:0048825: cotyledon development	3.16E-03
46	GO:0071554: cell wall organization or biogenesis	3.38E-03
47	GO:0009099: valine biosynthetic process	3.81E-03
48	GO:0071333: cellular response to glucose stimulus	3.81E-03
49	GO:0009082: branched-chain amino acid biosynthetic process	3.81E-03
50	GO:1901657: glycosyl compound metabolic process	3.85E-03
51	GO:0010161: red light signaling pathway	4.49E-03
52	GO:0048437: floral organ development	4.49E-03
53	GO:0010098: suspensor development	4.49E-03
54	GO:0045892: negative regulation of transcription, DNA-templated	5.07E-03
55	GO:0005978: glycogen biosynthetic process	5.21E-03
56	GO:0006402: mRNA catabolic process	5.21E-03
57	GO:0009704: de-etiolation	5.21E-03
58	GO:0015995: chlorophyll biosynthetic process	5.75E-03
59	GO:0048573: photoperiodism, flowering	5.75E-03
60	GO:0010099: regulation of photomorphogenesis	5.98E-03
61	GO:0009097: isoleucine biosynthetic process	5.98E-03
62	GO:0010100: negative regulation of photomorphogenesis	5.98E-03
63	GO:0000902: cell morphogenesis	6.77E-03
64	GO:0051865: protein autoubiquitination	6.77E-03
65	GO:0006783: heme biosynthetic process	6.77E-03
66	GO:0009638: phototropism	7.60E-03
67	GO:0006779: porphyrin-containing compound biosynthetic process	7.60E-03
68	GO:0009098: leucine biosynthetic process	7.60E-03
69	GO:0048829: root cap development	8.48E-03
70	GO:0009641: shade avoidance	8.48E-03
71	GO:0010629: negative regulation of gene expression	8.48E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	8.48E-03
73	GO:0048229: gametophyte development	9.38E-03
74	GO:0009073: aromatic amino acid family biosynthetic process	9.38E-03
75	GO:0012501: programmed cell death	1.03E-02
76	GO:0005983: starch catabolic process	1.03E-02
77	GO:2000028: regulation of photoperiodism, flowering	1.13E-02
78	GO:0010075: regulation of meristem growth	1.13E-02
79	GO:0009725: response to hormone	1.13E-02
80	GO:0010588: cotyledon vascular tissue pattern formation	1.13E-02
81	GO:0009785: blue light signaling pathway	1.13E-02
82	GO:0010223: secondary shoot formation	1.23E-02
83	GO:0009934: regulation of meristem structural organization	1.23E-02
84	GO:0010020: chloroplast fission	1.23E-02
85	GO:0010207: photosystem II assembly	1.23E-02
86	GO:0090351: seedling development	1.33E-02
87	GO:0010025: wax biosynthetic process	1.44E-02
88	GO:0010187: negative regulation of seed germination	1.55E-02
89	GO:0009416: response to light stimulus	1.62E-02
90	GO:0048511: rhythmic process	1.78E-02
91	GO:0048278: vesicle docking	1.78E-02
92	GO:0016114: terpenoid biosynthetic process	1.78E-02
93	GO:0007275: multicellular organism development	1.82E-02
94	GO:0009740: gibberellic acid mediated signaling pathway	1.89E-02
95	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.90E-02
96	GO:0001944: vasculature development	2.02E-02
97	GO:0010082: regulation of root meristem growth	2.02E-02
98	GO:0016117: carotenoid biosynthetic process	2.27E-02
99	GO:0010087: phloem or xylem histogenesis	2.40E-02
100	GO:0010118: stomatal movement	2.40E-02
101	GO:0048653: anther development	2.40E-02
102	GO:0080022: primary root development	2.40E-02
103	GO:0006468: protein phosphorylation	2.42E-02
104	GO:0009793: embryo development ending in seed dormancy	2.47E-02
105	GO:0010182: sugar mediated signaling pathway	2.53E-02
106	GO:0009960: endosperm development	2.53E-02
107	GO:0010305: leaf vascular tissue pattern formation	2.53E-02
108	GO:0007018: microtubule-based movement	2.66E-02
109	GO:0061025: membrane fusion	2.66E-02
110	GO:0042752: regulation of circadian rhythm	2.66E-02
111	GO:0019252: starch biosynthetic process	2.80E-02
112	GO:0032502: developmental process	3.08E-02
113	GO:0010583: response to cyclopentenone	3.08E-02
114	GO:0030163: protein catabolic process	3.22E-02
115	GO:0010090: trichome morphogenesis	3.22E-02
116	GO:0007267: cell-cell signaling	3.51E-02
117	GO:0009451: RNA modification	3.56E-02
118	GO:0051607: defense response to virus	3.66E-02
119	GO:0010027: thylakoid membrane organization	3.82E-02
120	GO:0009739: response to gibberellin	3.88E-02
121	GO:0010029: regulation of seed germination	3.97E-02
122	GO:0006906: vesicle fusion	4.13E-02
123	GO:0016311: dephosphorylation	4.44E-02
124	GO:0010311: lateral root formation	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0015267: channel activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0071633: dihydroceramidase activity	0.00E+00
5	GO:0000170: sphingosine hydroxylase activity	2.94E-04
6	GO:0050139: nicotinate-N-glucosyltransferase activity	2.94E-04
7	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.94E-04
8	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.94E-04
9	GO:0010313: phytochrome binding	2.94E-04
10	GO:0004134: 4-alpha-glucanotransferase activity	2.94E-04
11	GO:0016788: hydrolase activity, acting on ester bonds	5.92E-04
12	GO:0045543: gibberellin 2-beta-dioxygenase activity	6.45E-04
13	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.45E-04
14	GO:0042284: sphingolipid delta-4 desaturase activity	6.45E-04
15	GO:0008493: tetracycline transporter activity	6.45E-04
16	GO:0004614: phosphoglucomutase activity	6.45E-04
17	GO:0052689: carboxylic ester hydrolase activity	9.96E-04
18	GO:0052654: L-leucine transaminase activity	1.50E-03
19	GO:0045544: gibberellin 20-oxidase activity	1.50E-03
20	GO:0052655: L-valine transaminase activity	1.50E-03
21	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.50E-03
22	GO:0052656: L-isoleucine transaminase activity	1.50E-03
23	GO:0033612: receptor serine/threonine kinase binding	1.68E-03
24	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.01E-03
25	GO:0004084: branched-chain-amino-acid transaminase activity	2.01E-03
26	GO:0019199: transmembrane receptor protein kinase activity	2.01E-03
27	GO:0016298: lipase activity	2.38E-03
28	GO:0001085: RNA polymerase II transcription factor binding	2.74E-03
29	GO:0080030: methyl indole-3-acetate esterase activity	3.16E-03
30	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.16E-03
31	GO:0004709: MAP kinase kinase kinase activity	3.16E-03
32	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.81E-03
33	GO:0016832: aldehyde-lyase activity	3.81E-03
34	GO:0016413: O-acetyltransferase activity	4.61E-03
35	GO:0004871: signal transducer activity	5.32E-03
36	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	5.60E-03
37	GO:0102483: scopolin beta-glucosidase activity	5.75E-03
38	GO:0008173: RNA methyltransferase activity	5.98E-03
39	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	7.37E-03
40	GO:0009055: electron carrier activity	7.58E-03
41	GO:0004674: protein serine/threonine kinase activity	8.02E-03
42	GO:0008422: beta-glucosidase activity	8.83E-03
43	GO:0047372: acylglycerol lipase activity	9.38E-03
44	GO:0043621: protein self-association	1.13E-02
45	GO:0003725: double-stranded RNA binding	1.13E-02
46	GO:0000287: magnesium ion binding	1.22E-02
47	GO:0004190: aspartic-type endopeptidase activity	1.33E-02
48	GO:0008146: sulfotransferase activity	1.33E-02
49	GO:0003712: transcription cofactor activity	1.33E-02
50	GO:0044212: transcription regulatory region DNA binding	1.54E-02
51	GO:0051536: iron-sulfur cluster binding	1.55E-02
52	GO:0003777: microtubule motor activity	1.56E-02
53	GO:0010333: terpene synthase activity	1.78E-02
54	GO:0003964: RNA-directed DNA polymerase activity	1.78E-02
55	GO:0015035: protein disulfide oxidoreductase activity	2.07E-02
56	GO:0043565: sequence-specific DNA binding	2.10E-02
57	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.13E-02
58	GO:0003727: single-stranded RNA binding	2.14E-02
59	GO:0042803: protein homodimerization activity	2.18E-02
60	GO:0003723: RNA binding	2.47E-02
61	GO:0005199: structural constituent of cell wall	2.53E-02
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.59E-02
63	GO:0016853: isomerase activity	2.66E-02
64	GO:0019901: protein kinase binding	2.80E-02
65	GO:0004872: receptor activity	2.80E-02
66	GO:0004519: endonuclease activity	2.97E-02
67	GO:0004518: nuclease activity	3.08E-02
68	GO:0016791: phosphatase activity	3.37E-02
69	GO:0005200: structural constituent of cytoskeleton	3.51E-02
70	GO:0008017: microtubule binding	3.64E-02
71	GO:0016301: kinase activity	3.95E-02
72	GO:0008289: lipid binding	4.03E-02
73	GO:0005509: calcium ion binding	4.07E-02
74	GO:0042802: identical protein binding	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	1.22E-04
2	GO:0019898: extrinsic component of membrane	3.43E-04
3	GO:0008287: protein serine/threonine phosphatase complex	1.04E-03
4	GO:0030139: endocytic vesicle	1.04E-03
5	GO:0032585: multivesicular body membrane	1.50E-03
6	GO:0009544: chloroplast ATP synthase complex	2.01E-03
7	GO:0009986: cell surface	4.49E-03
8	GO:0009501: amyloplast	5.21E-03
9	GO:0005667: transcription factor complex	5.45E-03
10	GO:0009534: chloroplast thylakoid	6.31E-03
11	GO:0009507: chloroplast	8.50E-03
12	GO:0030095: chloroplast photosystem II	1.23E-02
13	GO:0005875: microtubule associated complex	1.44E-02
14	GO:0015629: actin cytoskeleton	2.02E-02
15	GO:0005871: kinesin complex	2.27E-02
16	GO:0009504: cell plate	2.80E-02
17	GO:0043231: intracellular membrane-bounded organelle	3.02E-02
18	GO:0010319: stromule	3.51E-02
19	GO:0030529: intracellular ribonucleoprotein complex	3.82E-02
20	GO:0046658: anchored component of plasma membrane	4.59E-02
21	GO:0009707: chloroplast outer membrane	4.61E-02