co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G13000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006511: ubiquitin-dependent protein catabolic process	8.86E-13
2	GO:0030433: ubiquitin-dependent ERAD pathway	1.04E-06
3	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.09E-06
4	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	7.21E-06
5	GO:0048455: stamen formation	3.00E-05
6	GO:0051788: response to misfolded protein	7.58E-05
7	GO:0010498: proteasomal protein catabolic process	1.32E-04
8	GO:0010255: glucose mediated signaling pathway	1.97E-04
9	GO:0010387: COP9 signalosome assembly	2.67E-04
10	GO:0046355: mannan catabolic process	2.67E-04
11	GO:0006370: 7-methylguanosine mRNA capping	2.67E-04
12	GO:0048767: root hair elongation	3.32E-04
13	GO:0043248: proteasome assembly	4.20E-04
14	GO:0009651: response to salt stress	5.37E-04
15	GO:0048528: post-embryonic root development	5.88E-04
16	GO:0000338: protein deneddylation	5.88E-04
17	GO:0048766: root hair initiation	6.76E-04
18	GO:0009932: cell tip growth	7.68E-04
19	GO:0006098: pentose-phosphate shunt	8.63E-04
20	GO:0048765: root hair cell differentiation	1.16E-03
21	GO:0046856: phosphatidylinositol dephosphorylation	1.16E-03
22	GO:0009725: response to hormone	1.38E-03
23	GO:0006094: gluconeogenesis	1.38E-03
24	GO:0010053: root epidermal cell differentiation	1.61E-03
25	GO:0019762: glucosinolate catabolic process	1.73E-03
26	GO:0010431: seed maturation	2.11E-03
27	GO:0010154: fruit development	2.94E-03
28	GO:0030163: protein catabolic process	3.71E-03
29	GO:0016579: protein deubiquitination	4.20E-03
30	GO:0010029: regulation of seed germination	4.53E-03
31	GO:0046686: response to cadmium ion	4.65E-03
32	GO:0006974: cellular response to DNA damage stimulus	4.70E-03
33	GO:0030001: metal ion transport	6.74E-03
34	GO:0009744: response to sucrose	7.34E-03
35	GO:0009640: photomorphogenesis	7.34E-03
36	GO:0000209: protein polyubiquitination	7.54E-03
37	GO:0009555: pollen development	7.91E-03
38	GO:0042538: hyperosmotic salinity response	8.60E-03
39	GO:0009585: red, far-red light phototransduction	9.03E-03
40	GO:0051603: proteolysis involved in cellular protein catabolic process	9.25E-03
41	GO:0006096: glycolytic process	1.02E-02
42	GO:0043086: negative regulation of catalytic activity	1.02E-02
43	GO:0009553: embryo sac development	1.13E-02
44	GO:0010150: leaf senescence	1.70E-02
45	GO:0009733: response to auxin	1.81E-02
46	GO:0009617: response to bacterium	1.93E-02
47	GO:0009409: response to cold	2.18E-02
48	GO:0048366: leaf development	2.61E-02
49	GO:0080167: response to karrikin	2.71E-02
50	GO:0007275: multicellular organism development	3.17E-02
51	GO:0009737: response to abscisic acid	3.43E-02
52	GO:0009408: response to heat	3.58E-02
53	GO:0009793: embryo development ending in seed dormancy	3.72E-02
54	GO:0009753: response to jasmonic acid	3.76E-02

Rank	GO Term	Adjusted P value
1	GO:0004482: mRNA (guanine-N7-)-methyltransferase activity	0.00E+00
2	GO:0004298: threonine-type endopeptidase activity	2.51E-11
3	GO:0036402: proteasome-activating ATPase activity	3.09E-06
4	GO:0008233: peptidase activity	2.11E-05
5	GO:0017025: TBP-class protein binding	4.64E-05
6	GO:0001653: peptide receptor activity	1.97E-04
7	GO:0016985: mannan endo-1,4-beta-mannosidase activity	2.67E-04
8	GO:0031593: polyubiquitin binding	4.20E-04
9	GO:0004332: fructose-bisphosphate aldolase activity	4.20E-04
10	GO:0016887: ATPase activity	9.32E-04
11	GO:0001054: RNA polymerase I activity	1.16E-03
12	GO:0001056: RNA polymerase III activity	1.27E-03
13	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.38E-03
14	GO:0004175: endopeptidase activity	1.50E-03
15	GO:0043424: protein histidine kinase binding	1.98E-03
16	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.40E-03
17	GO:0102483: scopolin beta-glucosidase activity	4.88E-03
18	GO:0004222: metalloendopeptidase activity	5.60E-03
19	GO:0003993: acid phosphatase activity	6.35E-03
20	GO:0008422: beta-glucosidase activity	6.54E-03
21	GO:0016787: hydrolase activity	6.97E-03
22	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.03E-03
23	GO:0031625: ubiquitin protein ligase binding	9.70E-03
24	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.04E-02
25	GO:0046910: pectinesterase inhibitor activity	1.62E-02
26	GO:0000287: magnesium ion binding	2.29E-02
27	GO:0061630: ubiquitin protein ligase activity	2.81E-02
28	GO:0004722: protein serine/threonine phosphatase activity	3.29E-02
29	GO:0008289: lipid binding	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	6.53E-17
2	GO:0005839: proteasome core complex	2.51E-11
3	GO:0031595: nuclear proteasome complex	1.92E-08
4	GO:0019773: proteasome core complex, alpha-subunit complex	4.47E-08
5	GO:0008540: proteasome regulatory particle, base subcomplex	8.90E-08
6	GO:0031597: cytosolic proteasome complex	4.52E-06
7	GO:0019774: proteasome core complex, beta-subunit complex	3.00E-05
8	GO:0005774: vacuolar membrane	5.68E-04
9	GO:0008180: COP9 signalosome	8.63E-04
10	GO:0005736: DNA-directed RNA polymerase I complex	8.63E-04
11	GO:0005666: DNA-directed RNA polymerase III complex	9.61E-04
12	GO:0005740: mitochondrial envelope	1.06E-03
13	GO:0008541: proteasome regulatory particle, lid subcomplex	1.16E-03
14	GO:0005829: cytosol	1.23E-03
15	GO:0031307: integral component of mitochondrial outer membrane	1.27E-03
16	GO:0005741: mitochondrial outer membrane	2.11E-03
17	GO:0048046: apoplast	2.96E-03
18	GO:0005618: cell wall	3.38E-03
19	GO:0016592: mediator complex	3.55E-03
20	GO:0022626: cytosolic ribosome	7.57E-03
21	GO:0031966: mitochondrial membrane	8.60E-03
22	GO:0005747: mitochondrial respiratory chain complex I	1.04E-02
23	GO:0009506: plasmodesma	2.08E-02
24	GO:0005773: vacuole	2.20E-02
25	GO:0005737: cytoplasm	2.54E-02
26	GO:0005783: endoplasmic reticulum	3.10E-02