Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G12730

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009583: detection of light stimulus0.00E+00
2GO:0007037: vacuolar phosphate transport0.00E+00
3GO:1905177: tracheary element differentiation0.00E+00
4GO:0006114: glycerol biosynthetic process0.00E+00
5GO:0008298: intracellular mRNA localization0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0070979: protein K11-linked ubiquitination0.00E+00
8GO:0010081: regulation of inflorescence meristem growth0.00E+00
9GO:0071000: response to magnetism0.00E+00
10GO:0045038: protein import into chloroplast thylakoid membrane1.47E-06
11GO:2001141: regulation of RNA biosynthetic process4.34E-05
12GO:0010207: photosystem II assembly9.45E-05
13GO:0080110: sporopollenin biosynthetic process1.21E-04
14GO:0006730: one-carbon metabolic process2.32E-04
15GO:0006400: tRNA modification3.06E-04
16GO:0031426: polycistronic mRNA processing3.52E-04
17GO:0043266: regulation of potassium ion transport3.52E-04
18GO:0010080: regulation of floral meristem growth3.52E-04
19GO:0051775: response to redox state3.52E-04
20GO:0072387: flavin adenine dinucleotide metabolic process3.52E-04
21GO:2000021: regulation of ion homeostasis3.52E-04
22GO:0070574: cadmium ion transmembrane transport3.52E-04
23GO:0051247: positive regulation of protein metabolic process3.52E-04
24GO:0000066: mitochondrial ornithine transport3.52E-04
25GO:1902458: positive regulation of stomatal opening3.52E-04
26GO:2000905: negative regulation of starch metabolic process3.52E-04
27GO:0000305: response to oxygen radical3.52E-04
28GO:0006419: alanyl-tRNA aminoacylation3.52E-04
29GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.52E-04
30GO:0015969: guanosine tetraphosphate metabolic process3.52E-04
31GO:0048564: photosystem I assembly3.84E-04
32GO:0071482: cellular response to light stimulus4.70E-04
33GO:0048507: meristem development5.65E-04
34GO:0000373: Group II intron splicing5.65E-04
35GO:1900871: chloroplast mRNA modification7.67E-04
36GO:0060359: response to ammonium ion7.67E-04
37GO:0048255: mRNA stabilization7.67E-04
38GO:0010617: circadian regulation of calcium ion oscillation7.67E-04
39GO:1901959: positive regulation of cutin biosynthetic process7.67E-04
40GO:0099402: plant organ development7.67E-04
41GO:1903426: regulation of reactive oxygen species biosynthetic process7.67E-04
42GO:0010024: phytochromobilin biosynthetic process7.67E-04
43GO:0010343: singlet oxygen-mediated programmed cell death7.67E-04
44GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole7.67E-04
45GO:1901529: positive regulation of anion channel activity7.67E-04
46GO:0010027: thylakoid membrane organization8.42E-04
47GO:0006352: DNA-templated transcription, initiation8.95E-04
48GO:0009658: chloroplast organization9.15E-04
49GO:0045037: protein import into chloroplast stroma1.02E-03
50GO:0031145: anaphase-promoting complex-dependent catabolic process1.24E-03
51GO:0006788: heme oxidation1.24E-03
52GO:0010022: meristem determinacy1.24E-03
53GO:0010623: programmed cell death involved in cell development1.24E-03
54GO:1901672: positive regulation of systemic acquired resistance1.24E-03
55GO:1904278: positive regulation of wax biosynthetic process1.24E-03
56GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.24E-03
57GO:0006696: ergosterol biosynthetic process1.24E-03
58GO:0090153: regulation of sphingolipid biosynthetic process1.24E-03
59GO:0043157: response to cation stress1.24E-03
60GO:0005977: glycogen metabolic process1.24E-03
61GO:0048586: regulation of long-day photoperiodism, flowering1.24E-03
62GO:1902448: positive regulation of shade avoidance1.24E-03
63GO:1901332: negative regulation of lateral root development1.79E-03
64GO:0031048: chromatin silencing by small RNA1.79E-03
65GO:1990019: protein storage vacuole organization1.79E-03
66GO:0016556: mRNA modification1.79E-03
67GO:0090308: regulation of methylation-dependent chromatin silencing1.79E-03
68GO:0046836: glycolipid transport1.79E-03
69GO:0030071: regulation of mitotic metaphase/anaphase transition1.79E-03
70GO:0006107: oxaloacetate metabolic process1.79E-03
71GO:0010239: chloroplast mRNA processing1.79E-03
72GO:0009226: nucleotide-sugar biosynthetic process1.79E-03
73GO:0019048: modulation by virus of host morphology or physiology1.79E-03
74GO:0006839: mitochondrial transport1.86E-03
75GO:0042546: cell wall biogenesis2.29E-03
76GO:0005975: carbohydrate metabolic process2.33E-03
77GO:0045723: positive regulation of fatty acid biosynthetic process2.40E-03
78GO:0051567: histone H3-K9 methylation2.40E-03
79GO:0010508: positive regulation of autophagy2.40E-03
80GO:0006734: NADH metabolic process2.40E-03
81GO:0008295: spermidine biosynthetic process2.40E-03
82GO:1902347: response to strigolactone2.40E-03
83GO:0006749: glutathione metabolic process2.40E-03
84GO:0010021: amylopectin biosynthetic process2.40E-03
85GO:0048442: sepal development2.40E-03
86GO:0051322: anaphase2.40E-03
87GO:0006661: phosphatidylinositol biosynthetic process2.40E-03
88GO:2000306: positive regulation of photomorphogenesis2.40E-03
89GO:0006109: regulation of carbohydrate metabolic process2.40E-03
90GO:0031122: cytoplasmic microtubule organization2.40E-03
91GO:0010584: pollen exine formation2.82E-03
92GO:0010117: photoprotection3.07E-03
93GO:0046283: anthocyanin-containing compound metabolic process3.07E-03
94GO:0009107: lipoate biosynthetic process3.07E-03
95GO:1902183: regulation of shoot apical meristem development3.07E-03
96GO:0016123: xanthophyll biosynthetic process3.07E-03
97GO:0010158: abaxial cell fate specification3.07E-03
98GO:0032876: negative regulation of DNA endoreduplication3.07E-03
99GO:0045489: pectin biosynthetic process3.57E-03
100GO:0048868: pollen tube development3.57E-03
101GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.79E-03
102GO:1901371: regulation of leaf morphogenesis3.79E-03
103GO:0016458: gene silencing3.79E-03
104GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.79E-03
105GO:0009959: negative gravitropism3.79E-03
106GO:0006555: methionine metabolic process3.79E-03
107GO:0060918: auxin transport3.79E-03
108GO:0008654: phospholipid biosynthetic process4.11E-03
109GO:0010076: maintenance of floral meristem identity4.57E-03
110GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.57E-03
111GO:0010189: vitamin E biosynthetic process4.57E-03
112GO:0010310: regulation of hydrogen peroxide metabolic process4.57E-03
113GO:0009612: response to mechanical stimulus4.57E-03
114GO:0032502: developmental process4.70E-03
115GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.40E-03
116GO:0009645: response to low light intensity stimulus5.40E-03
117GO:0051510: regulation of unidimensional cell growth5.40E-03
118GO:0006955: immune response5.40E-03
119GO:0009395: phospholipid catabolic process5.40E-03
120GO:0009690: cytokinin metabolic process6.27E-03
121GO:0006605: protein targeting6.27E-03
122GO:0042255: ribosome assembly6.27E-03
123GO:0032875: regulation of DNA endoreduplication6.27E-03
124GO:0006353: DNA-templated transcription, termination6.27E-03
125GO:0006875: cellular metal ion homeostasis6.27E-03
126GO:2000070: regulation of response to water deprivation6.27E-03
127GO:0010492: maintenance of shoot apical meristem identity6.27E-03
128GO:0000105: histidine biosynthetic process6.27E-03
129GO:0007186: G-protein coupled receptor signaling pathway7.19E-03
130GO:0009657: plastid organization7.19E-03
131GO:0015996: chlorophyll catabolic process7.19E-03
132GO:0010411: xyloglucan metabolic process7.51E-03
133GO:2000024: regulation of leaf development8.16E-03
134GO:0006754: ATP biosynthetic process8.16E-03
135GO:0009051: pentose-phosphate shunt, oxidative branch8.16E-03
136GO:0090305: nucleic acid phosphodiester bond hydrolysis8.16E-03
137GO:0010206: photosystem II repair8.16E-03
138GO:0071555: cell wall organization8.30E-03
139GO:0009086: methionine biosynthetic process9.17E-03
140GO:1900865: chloroplast RNA modification9.17E-03
141GO:0031425: chloroplast RNA processing9.17E-03
142GO:1900426: positive regulation of defense response to bacterium9.17E-03
143GO:0009638: phototropism9.17E-03
144GO:0035999: tetrahydrofolate interconversion9.17E-03
145GO:0019538: protein metabolic process1.02E-02
146GO:0048441: petal development1.02E-02
147GO:0030422: production of siRNA involved in RNA interference1.02E-02
148GO:0009299: mRNA transcription1.02E-02
149GO:0009637: response to blue light1.06E-02
150GO:0043085: positive regulation of catalytic activity1.13E-02
151GO:0006415: translational termination1.13E-02
152GO:0010216: maintenance of DNA methylation1.13E-02
153GO:0019684: photosynthesis, light reaction1.13E-02
154GO:0009089: lysine biosynthetic process via diaminopimelate1.13E-02
155GO:0010582: floral meristem determinacy1.25E-02
156GO:0009785: blue light signaling pathway1.37E-02
157GO:0006108: malate metabolic process1.37E-02
158GO:0010114: response to red light1.37E-02
159GO:0009718: anthocyanin-containing compound biosynthetic process1.37E-02
160GO:0010075: regulation of meristem growth1.37E-02
161GO:0009725: response to hormone1.37E-02
162GO:0006094: gluconeogenesis1.37E-02
163GO:0009767: photosynthetic electron transport chain1.37E-02
164GO:0009644: response to high light intensity1.48E-02
165GO:0009887: animal organ morphogenesis1.49E-02
166GO:0048440: carpel development1.49E-02
167GO:0090351: seedling development1.61E-02
168GO:0009793: embryo development ending in seed dormancy1.64E-02
169GO:0006833: water transport1.74E-02
170GO:2000377: regulation of reactive oxygen species metabolic process1.88E-02
171GO:0009944: polarity specification of adaxial/abaxial axis1.88E-02
172GO:0006306: DNA methylation2.15E-02
173GO:0016998: cell wall macromolecule catabolic process2.15E-02
174GO:0010431: seed maturation2.15E-02
175GO:0006096: glycolytic process2.18E-02
176GO:0048316: seed development2.26E-02
177GO:0030245: cellulose catabolic process2.29E-02
178GO:0009416: response to light stimulus2.42E-02
179GO:0009740: gibberellic acid mediated signaling pathway2.48E-02
180GO:0019722: calcium-mediated signaling2.59E-02
181GO:0009306: protein secretion2.59E-02
182GO:0010089: xylem development2.59E-02
183GO:0048443: stamen development2.59E-02
184GO:0015979: photosynthesis2.71E-02
185GO:0016117: carotenoid biosynthetic process2.74E-02
186GO:0000271: polysaccharide biosynthetic process2.90E-02
187GO:0008033: tRNA processing2.90E-02
188GO:0034220: ion transmembrane transport2.90E-02
189GO:0010087: phloem or xylem histogenesis2.90E-02
190GO:0010118: stomatal movement2.90E-02
191GO:0007275: multicellular organism development3.01E-02
192GO:0010154: fruit development3.06E-02
193GO:0006662: glycerol ether metabolic process3.06E-02
194GO:0010182: sugar mediated signaling pathway3.06E-02
195GO:0006342: chromatin silencing3.06E-02
196GO:0010268: brassinosteroid homeostasis3.06E-02
197GO:0006520: cellular amino acid metabolic process3.06E-02
198GO:0048544: recognition of pollen3.22E-02
199GO:0042752: regulation of circadian rhythm3.22E-02
200GO:0007059: chromosome segregation3.22E-02
201GO:0009646: response to absence of light3.22E-02
202GO:0009791: post-embryonic development3.39E-02
203GO:0019252: starch biosynthetic process3.39E-02
204GO:0055072: iron ion homeostasis3.39E-02
205GO:0055085: transmembrane transport3.43E-02
206GO:0016132: brassinosteroid biosynthetic process3.55E-02
207GO:0009630: gravitropism3.72E-02
208GO:0016032: viral process3.72E-02
209GO:0006629: lipid metabolic process3.73E-02
210GO:0019760: glucosinolate metabolic process4.07E-02
211GO:0016125: sterol metabolic process4.07E-02
212GO:0006413: translational initiation4.23E-02
213GO:0007267: cell-cell signaling4.25E-02
214GO:0051607: defense response to virus4.43E-02
215GO:0000910: cytokinesis4.43E-02
216GO:0006810: transport4.59E-02
217GO:0016126: sterol biosynthetic process4.62E-02
218GO:0009451: RNA modification4.63E-02
219GO:0010029: regulation of seed germination4.80E-02
220GO:0009816: defense response to bacterium, incompatible interaction4.80E-02
RankGO TermAdjusted P value
1GO:0010276: phytol kinase activity0.00E+00
2GO:0046905: phytoene synthase activity0.00E+00
3GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0043136: glycerol-3-phosphatase activity0.00E+00
6GO:0000121: glycerol-1-phosphatase activity0.00E+00
7GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.59E-06
10GO:0001053: plastid sigma factor activity7.72E-05
11GO:0016987: sigma factor activity7.72E-05
12GO:0004462: lactoylglutathione lyase activity1.74E-04
13GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity3.52E-04
14GO:0004813: alanine-tRNA ligase activity3.52E-04
15GO:0005290: L-histidine transmembrane transporter activity3.52E-04
16GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity3.52E-04
17GO:0008158: hedgehog receptor activity3.52E-04
18GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity3.52E-04
19GO:0051996: squalene synthase activity3.52E-04
20GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.52E-04
21GO:0008746: NAD(P)+ transhydrogenase activity3.52E-04
22GO:0003879: ATP phosphoribosyltransferase activity3.52E-04
23GO:0008568: microtubule-severing ATPase activity3.52E-04
24GO:0042834: peptidoglycan binding3.52E-04
25GO:0019156: isoamylase activity7.67E-04
26GO:0004802: transketolase activity7.67E-04
27GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.67E-04
28GO:0000064: L-ornithine transmembrane transporter activity7.67E-04
29GO:0016743: carboxyl- or carbamoyltransferase activity7.67E-04
30GO:0008728: GTP diphosphokinase activity7.67E-04
31GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.67E-04
32GO:0048531: beta-1,3-galactosyltransferase activity7.67E-04
33GO:0004362: glutathione-disulfide reductase activity7.67E-04
34GO:0043425: bHLH transcription factor binding7.67E-04
35GO:0004766: spermidine synthase activity7.67E-04
36GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.06E-03
37GO:0016992: lipoate synthase activity1.24E-03
38GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.30E-03
39GO:0016149: translation release factor activity, codon specific1.79E-03
40GO:0015181: arginine transmembrane transporter activity1.79E-03
41GO:0035197: siRNA binding1.79E-03
42GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.79E-03
43GO:0009882: blue light photoreceptor activity1.79E-03
44GO:0017057: 6-phosphogluconolactonase activity1.79E-03
45GO:0015189: L-lysine transmembrane transporter activity1.79E-03
46GO:0017089: glycolipid transporter activity1.79E-03
47GO:0015086: cadmium ion transmembrane transporter activity1.79E-03
48GO:0048027: mRNA 5'-UTR binding1.79E-03
49GO:0004392: heme oxygenase (decyclizing) activity2.40E-03
50GO:0051861: glycolipid binding2.40E-03
51GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.40E-03
52GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.40E-03
53GO:0016773: phosphotransferase activity, alcohol group as acceptor3.07E-03
54GO:0008374: O-acyltransferase activity3.07E-03
55GO:0004556: alpha-amylase activity3.79E-03
56GO:0016615: malate dehydrogenase activity3.79E-03
57GO:0008200: ion channel inhibitor activity3.79E-03
58GO:0004605: phosphatidate cytidylyltransferase activity3.79E-03
59GO:0050662: coenzyme binding3.83E-03
60GO:0016762: xyloglucan:xyloglucosyl transferase activity4.40E-03
61GO:0030060: L-malate dehydrogenase activity4.57E-03
62GO:0004518: nuclease activity4.70E-03
63GO:0015103: inorganic anion transmembrane transporter activity5.40E-03
64GO:0016597: amino acid binding6.02E-03
65GO:0043022: ribosome binding6.27E-03
66GO:0008312: 7S RNA binding6.27E-03
67GO:0016798: hydrolase activity, acting on glycosyl bonds7.51E-03
68GO:0071949: FAD binding8.16E-03
69GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism8.16E-03
70GO:0003747: translation release factor activity8.16E-03
71GO:0030955: potassium ion binding9.17E-03
72GO:0004743: pyruvate kinase activity9.17E-03
73GO:0004222: metalloendopeptidase activity9.19E-03
74GO:0008047: enzyme activator activity1.02E-02
75GO:0003993: acid phosphatase activity1.11E-02
76GO:0000976: transcription regulatory region sequence-specific DNA binding1.25E-02
77GO:0000049: tRNA binding1.25E-02
78GO:0004521: endoribonuclease activity1.25E-02
79GO:0008081: phosphoric diester hydrolase activity1.37E-02
80GO:0016491: oxidoreductase activity1.41E-02
81GO:0004672: protein kinase activity1.74E-02
82GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.85E-02
83GO:0004857: enzyme inhibitor activity1.88E-02
84GO:0005528: FK506 binding1.88E-02
85GO:0003690: double-stranded DNA binding1.91E-02
86GO:0004176: ATP-dependent peptidase activity2.15E-02
87GO:0003723: RNA binding2.25E-02
88GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.29E-02
89GO:0008810: cellulase activity2.44E-02
90GO:0003727: single-stranded RNA binding2.59E-02
91GO:0047134: protein-disulfide reductase activity2.74E-02
92GO:0003824: catalytic activity2.85E-02
93GO:0046873: metal ion transmembrane transporter activity3.06E-02
94GO:0008080: N-acetyltransferase activity3.06E-02
95GO:0004791: thioredoxin-disulfide reductase activity3.22E-02
96GO:0019901: protein kinase binding3.39E-02
97GO:0048038: quinone binding3.55E-02
98GO:0003924: GTPase activity3.73E-02
99GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.90E-02
100GO:0004519: endonuclease activity4.14E-02
101GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.23E-02
102GO:0008237: metallopeptidase activity4.25E-02
103GO:0015250: water channel activity4.62E-02
104GO:0005525: GTP binding4.98E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast8.32E-20
3GO:0080085: signal recognition particle, chloroplast targeting5.59E-06
4GO:0009570: chloroplast stroma1.73E-05
5GO:0009535: chloroplast thylakoid membrane2.62E-04
6GO:0009941: chloroplast envelope3.86E-04
7GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.70E-04
8GO:0016604: nuclear body6.66E-04
9GO:0016605: PML body1.24E-03
10GO:0009528: plastid inner membrane1.24E-03
11GO:0005719: nuclear euchromatin1.79E-03
12GO:0009527: plastid outer membrane2.40E-03
13GO:0009579: thylakoid2.95E-03
14GO:0046658: anchored component of plasma membrane3.21E-03
15GO:0031969: chloroplast membrane5.66E-03
16GO:0010319: stromule5.67E-03
17GO:0030529: intracellular ribonucleoprotein complex6.37E-03
18GO:0009543: chloroplast thylakoid lumen6.66E-03
19GO:0042644: chloroplast nucleoid8.16E-03
20GO:0005720: nuclear heterochromatin8.16E-03
21GO:0005680: anaphase-promoting complex8.16E-03
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.16E-03
23GO:0015030: Cajal body9.17E-03
24GO:0000311: plastid large ribosomal subunit1.25E-02
25GO:0031977: thylakoid lumen1.26E-02
26GO:0009505: plant-type cell wall1.29E-02
27GO:0009574: preprophase band1.37E-02
28GO:0005578: proteinaceous extracellular matrix1.37E-02
29GO:0031225: anchored component of membrane1.56E-02
30GO:0030176: integral component of endoplasmic reticulum membrane1.61E-02
31GO:0005773: vacuole1.88E-02
32GO:0009654: photosystem II oxygen evolving complex2.01E-02
33GO:0042651: thylakoid membrane2.01E-02
34GO:0009532: plastid stroma2.15E-02
35GO:0012505: endomembrane system2.55E-02
36GO:0005623: cell3.38E-02
37GO:0019898: extrinsic component of membrane3.39E-02
38GO:0005743: mitochondrial inner membrane3.41E-02
39GO:0009705: plant-type vacuole membrane4.53E-02
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Gene type



Gene DE type