GO Enrichment Analysis of Co-expressed Genes with
AT4G12420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015871: choline transport | 0.00E+00 |
| 2 | GO:0010203: response to very low fluence red light stimulus | 0.00E+00 |
| 3 | GO:0043255: regulation of carbohydrate biosynthetic process | 2.80E-08 |
| 4 | GO:0015801: aromatic amino acid transport | 1.87E-05 |
| 5 | GO:0010201: response to continuous far red light stimulus by the high-irradiance response system | 1.87E-05 |
| 6 | GO:0043087: regulation of GTPase activity | 1.87E-05 |
| 7 | GO:0090603: sieve element differentiation | 4.85E-05 |
| 8 | GO:0009663: plasmodesma organization | 8.61E-05 |
| 9 | GO:2000082: regulation of L-ascorbic acid biosynthetic process | 8.61E-05 |
| 10 | GO:0017006: protein-tetrapyrrole linkage | 8.61E-05 |
| 11 | GO:0009584: detection of visible light | 1.30E-04 |
| 12 | GO:0010088: phloem development | 1.30E-04 |
| 13 | GO:0009226: nucleotide-sugar biosynthetic process | 1.30E-04 |
| 14 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.30E-04 |
| 15 | GO:0030244: cellulose biosynthetic process | 1.72E-04 |
| 16 | GO:0071483: cellular response to blue light | 1.78E-04 |
| 17 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 2.85E-04 |
| 18 | GO:0010337: regulation of salicylic acid metabolic process | 2.85E-04 |
| 19 | GO:0050665: hydrogen peroxide biosynthetic process | 2.85E-04 |
| 20 | GO:0017148: negative regulation of translation | 3.42E-04 |
| 21 | GO:0009854: oxidative photosynthetic carbon pathway | 3.42E-04 |
| 22 | GO:0009809: lignin biosynthetic process | 3.87E-04 |
| 23 | GO:0010161: red light signaling pathway | 4.02E-04 |
| 24 | GO:0048564: photosystem I assembly | 4.64E-04 |
| 25 | GO:0045010: actin nucleation | 4.64E-04 |
| 26 | GO:0009231: riboflavin biosynthetic process | 4.64E-04 |
| 27 | GO:0071482: cellular response to light stimulus | 5.27E-04 |
| 28 | GO:0046685: response to arsenic-containing substance | 5.93E-04 |
| 29 | GO:0009638: phototropism | 6.61E-04 |
| 30 | GO:0010215: cellulose microfibril organization | 7.30E-04 |
| 31 | GO:0006032: chitin catabolic process | 7.30E-04 |
| 32 | GO:0006352: DNA-templated transcription, initiation | 8.02E-04 |
| 33 | GO:0005986: sucrose biosynthetic process | 9.49E-04 |
| 34 | GO:0010053: root epidermal cell differentiation | 1.10E-03 |
| 35 | GO:0009825: multidimensional cell growth | 1.10E-03 |
| 36 | GO:0010167: response to nitrate | 1.10E-03 |
| 37 | GO:0090351: seedling development | 1.10E-03 |
| 38 | GO:0006833: water transport | 1.18E-03 |
| 39 | GO:0009833: plant-type primary cell wall biogenesis | 1.18E-03 |
| 40 | GO:0071555: cell wall organization | 1.26E-03 |
| 41 | GO:0003333: amino acid transmembrane transport | 1.44E-03 |
| 42 | GO:0016998: cell wall macromolecule catabolic process | 1.44E-03 |
| 43 | GO:0016226: iron-sulfur cluster assembly | 1.52E-03 |
| 44 | GO:0031348: negative regulation of defense response | 1.52E-03 |
| 45 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.80E-03 |
| 46 | GO:0034220: ion transmembrane transport | 1.89E-03 |
| 47 | GO:0010051: xylem and phloem pattern formation | 1.89E-03 |
| 48 | GO:0032502: developmental process | 2.40E-03 |
| 49 | GO:0009630: gravitropism | 2.40E-03 |
| 50 | GO:0010090: trichome morphogenesis | 2.50E-03 |
| 51 | GO:0016126: sterol biosynthetic process | 2.94E-03 |
| 52 | GO:0016049: cell growth | 3.40E-03 |
| 53 | GO:0018298: protein-chromophore linkage | 3.51E-03 |
| 54 | GO:0009834: plant-type secondary cell wall biogenesis | 3.76E-03 |
| 55 | GO:0010218: response to far red light | 3.76E-03 |
| 56 | GO:0006865: amino acid transport | 4.00E-03 |
| 57 | GO:0045087: innate immune response | 4.13E-03 |
| 58 | GO:0009640: photomorphogenesis | 4.91E-03 |
| 59 | GO:0009585: red, far-red light phototransduction | 6.02E-03 |
| 60 | GO:0009414: response to water deprivation | 8.68E-03 |
| 61 | GO:0009058: biosynthetic process | 9.33E-03 |
| 62 | GO:0007166: cell surface receptor signaling pathway | 1.24E-02 |
| 63 | GO:0006810: transport | 1.31E-02 |
| 64 | GO:0046686: response to cadmium ion | 1.39E-02 |
| 65 | GO:0009658: chloroplast organization | 1.54E-02 |
| 66 | GO:0009737: response to abscisic acid | 1.90E-02 |
| 67 | GO:0044550: secondary metabolite biosynthetic process | 1.90E-02 |
| 68 | GO:0009408: response to heat | 2.36E-02 |
| 69 | GO:0048364: root development | 2.43E-02 |
| 70 | GO:0009873: ethylene-activated signaling pathway | 2.83E-02 |
| 71 | GO:0055114: oxidation-reduction process | 2.96E-02 |
| 72 | GO:0009651: response to salt stress | 3.00E-02 |
| 73 | GO:0009735: response to cytokinin | 3.33E-02 |
| 74 | GO:0009738: abscisic acid-activated signaling pathway | 3.47E-02 |
| 75 | GO:0045893: positive regulation of transcription, DNA-templated | 3.92E-02 |
| 76 | GO:0055085: transmembrane transport | 4.21E-02 |
| 77 | GO:0006952: defense response | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015220: choline transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0031516: far-red light photoreceptor activity | 1.87E-05 |
| 3 | GO:0009883: red or far-red light photoreceptor activity | 4.85E-05 |
| 4 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 4.85E-05 |
| 5 | GO:0015173: aromatic amino acid transmembrane transporter activity | 4.85E-05 |
| 6 | GO:0032947: protein complex scaffold | 8.61E-05 |
| 7 | GO:0003935: GTP cyclohydrolase II activity | 8.61E-05 |
| 8 | GO:0050307: sucrose-phosphate phosphatase activity | 8.61E-05 |
| 9 | GO:0008020: G-protein coupled photoreceptor activity | 8.61E-05 |
| 10 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 1.30E-04 |
| 11 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 1.30E-04 |
| 12 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 1.30E-04 |
| 13 | GO:0001053: plastid sigma factor activity | 1.78E-04 |
| 14 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.78E-04 |
| 15 | GO:0016987: sigma factor activity | 1.78E-04 |
| 16 | GO:0004506: squalene monooxygenase activity | 1.78E-04 |
| 17 | GO:0008891: glycolate oxidase activity | 1.78E-04 |
| 18 | GO:0005275: amine transmembrane transporter activity | 2.30E-04 |
| 19 | GO:0048040: UDP-glucuronate decarboxylase activity | 2.85E-04 |
| 20 | GO:0004568: chitinase activity | 7.30E-04 |
| 21 | GO:0004673: protein histidine kinase activity | 7.30E-04 |
| 22 | GO:0000155: phosphorelay sensor kinase activity | 9.49E-04 |
| 23 | GO:0004190: aspartic-type endopeptidase activity | 1.10E-03 |
| 24 | GO:0051536: iron-sulfur cluster binding | 1.26E-03 |
| 25 | GO:0016779: nucleotidyltransferase activity | 1.52E-03 |
| 26 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.61E-03 |
| 27 | GO:0010181: FMN binding | 2.09E-03 |
| 28 | GO:0050662: coenzyme binding | 2.09E-03 |
| 29 | GO:0048038: quinone binding | 2.29E-03 |
| 30 | GO:0016759: cellulose synthase activity | 2.61E-03 |
| 31 | GO:0015250: water channel activity | 2.94E-03 |
| 32 | GO:0030247: polysaccharide binding | 3.28E-03 |
| 33 | GO:0005096: GTPase activator activity | 3.63E-03 |
| 34 | GO:0035091: phosphatidylinositol binding | 5.18E-03 |
| 35 | GO:0005198: structural molecule activity | 5.32E-03 |
| 36 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 6.02E-03 |
| 37 | GO:0005506: iron ion binding | 8.75E-03 |
| 38 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.07E-02 |
| 39 | GO:0005515: protein binding | 1.09E-02 |
| 40 | GO:0003729: mRNA binding | 1.33E-02 |
| 41 | GO:0042802: identical protein binding | 1.34E-02 |
| 42 | GO:0000287: magnesium ion binding | 1.52E-02 |
| 43 | GO:0050660: flavin adenine dinucleotide binding | 1.70E-02 |
| 44 | GO:0008233: peptidase activity | 1.77E-02 |
| 45 | GO:0052689: carboxylic ester hydrolase activity | 1.92E-02 |
| 46 | GO:0004871: signal transducer activity | 2.10E-02 |
| 47 | GO:0042803: protein homodimerization activity | 2.10E-02 |
| 48 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 2.15E-02 |
| 49 | GO:0016757: transferase activity, transferring glycosyl groups | 3.04E-02 |
| 50 | GO:0019825: oxygen binding | 4.57E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097218: sieve plate | 0.00E+00 |
| 2 | GO:0005802: trans-Golgi network | 1.05E-04 |
| 3 | GO:0005768: endosome | 1.32E-04 |
| 4 | GO:0030660: Golgi-associated vesicle membrane | 1.78E-04 |
| 5 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 1.78E-04 |
| 6 | GO:0031209: SCAR complex | 2.85E-04 |
| 7 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 4.64E-04 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.93E-04 |
| 9 | GO:0016604: nuclear body | 6.61E-04 |
| 10 | GO:0005765: lysosomal membrane | 8.02E-04 |
| 11 | GO:0005794: Golgi apparatus | 8.50E-04 |
| 12 | GO:0009574: preprophase band | 9.49E-04 |
| 13 | GO:0005769: early endosome | 1.18E-03 |
| 14 | GO:0046658: anchored component of plasma membrane | 1.20E-03 |
| 15 | GO:0009506: plasmodesma | 2.02E-03 |
| 16 | GO:0005887: integral component of plasma membrane | 3.38E-03 |
| 17 | GO:0005777: peroxisome | 5.05E-03 |
| 18 | GO:0005856: cytoskeleton | 5.32E-03 |
| 19 | GO:0048046: apoplast | 6.41E-03 |
| 20 | GO:0010008: endosome membrane | 6.91E-03 |
| 21 | GO:0016607: nuclear speck | 6.91E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 7.69E-03 |
| 23 | GO:0009524: phragmoplast | 9.33E-03 |
| 24 | GO:0005773: vacuole | 1.04E-02 |
| 25 | GO:0005774: vacuolar membrane | 3.10E-02 |
| 26 | GO:0005886: plasma membrane | 3.13E-02 |
| 27 | GO:0016021: integral component of membrane | 4.84E-02 |
| 28 | GO:0031225: anchored component of membrane | 4.88E-02 |