co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
2	GO:0036172: thiamine salvage	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0043039: tRNA aminoacylation	1.07E-04
5	GO:0045910: negative regulation of DNA recombination	1.84E-04
6	GO:0009102: biotin biosynthetic process	2.70E-04
7	GO:0010239: chloroplast mRNA processing	2.70E-04
8	GO:0044211: CTP salvage	2.70E-04
9	GO:0009800: cinnamic acid biosynthetic process	2.70E-04
10	GO:2000904: regulation of starch metabolic process	2.70E-04
11	GO:0044206: UMP salvage	3.64E-04
12	GO:0009658: chloroplast organization	4.55E-04
13	GO:0010158: abaxial cell fate specification	4.63E-04
14	GO:0009229: thiamine diphosphate biosynthetic process	4.63E-04
15	GO:0006559: L-phenylalanine catabolic process	5.67E-04
16	GO:0006206: pyrimidine nucleobase metabolic process	5.67E-04
17	GO:0009228: thiamine biosynthetic process	5.67E-04
18	GO:0006655: phosphatidylglycerol biosynthetic process	5.67E-04
19	GO:0010050: vegetative phase change	7.90E-04
20	GO:0010098: suspensor development	7.90E-04
21	GO:0009850: auxin metabolic process	9.08E-04
22	GO:0071482: cellular response to light stimulus	1.03E-03
23	GO:0009657: plastid organization	1.03E-03
24	GO:0000373: Group II intron splicing	1.16E-03
25	GO:0006298: mismatch repair	1.43E-03
26	GO:0010192: mucilage biosynthetic process	1.43E-03
27	GO:0016024: CDP-diacylglycerol biosynthetic process	1.72E-03
28	GO:0010582: floral meristem determinacy	1.72E-03
29	GO:0009058: biosynthetic process	1.94E-03
30	GO:0010020: chloroplast fission	2.03E-03
31	GO:0006863: purine nucleobase transport	2.36E-03
32	GO:0009833: plant-type primary cell wall biogenesis	2.36E-03
33	GO:0009451: RNA modification	2.58E-03
34	GO:0006418: tRNA aminoacylation for protein translation	2.70E-03
35	GO:0009793: embryo development ending in seed dormancy	3.05E-03
36	GO:0016226: iron-sulfur cluster assembly	3.06E-03
37	GO:0009686: gibberellin biosynthetic process	3.24E-03
38	GO:0016117: carotenoid biosynthetic process	3.63E-03
39	GO:0008654: phospholipid biosynthetic process	4.43E-03
40	GO:0010583: response to cyclopentenone	4.86E-03
41	GO:1901657: glycosyl compound metabolic process	5.07E-03
42	GO:0009639: response to red or far red light	5.30E-03
43	GO:0030244: cellulose biosynthetic process	7.19E-03
44	GO:0009832: plant-type cell wall biogenesis	7.43E-03
45	GO:0010114: response to red light	1.01E-02
46	GO:0009636: response to toxic substance	1.10E-02
47	GO:0009965: leaf morphogenesis	1.10E-02
48	GO:0016310: phosphorylation	1.50E-02
49	GO:0009740: gibberellic acid mediated signaling pathway	1.54E-02
50	GO:0009624: response to nematode	1.60E-02
51	GO:0009790: embryo development	2.10E-02
52	GO:0045490: pectin catabolic process	2.36E-02
53	GO:0009739: response to gibberellin	2.56E-02
54	GO:0005975: carbohydrate metabolic process	3.87E-02

Rank	GO Term	Adjusted P value
1	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0004056: argininosuccinate lyase activity	0.00E+00
4	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
5	GO:0004831: tyrosine-tRNA ligase activity	4.31E-05
6	GO:0004047: aminomethyltransferase activity	1.07E-04
7	GO:0050736: O-malonyltransferase activity	1.07E-04
8	GO:0045548: phenylalanine ammonia-lyase activity	1.84E-04
9	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.84E-04
10	GO:0017172: cysteine dioxygenase activity	2.70E-04
11	GO:0004845: uracil phosphoribosyltransferase activity	3.64E-04
12	GO:0030983: mismatched DNA binding	5.67E-04
13	GO:0004605: phosphatidate cytidylyltransferase activity	5.67E-04
14	GO:0004849: uridine kinase activity	6.76E-04
15	GO:0004519: endonuclease activity	1.07E-03
16	GO:0008134: transcription factor binding	2.52E-03
17	GO:0005345: purine nucleobase transmembrane transporter activity	2.70E-03
18	GO:0016760: cellulose synthase (UDP-forming) activity	3.24E-03
19	GO:0030570: pectate lyase activity	3.24E-03
20	GO:0004812: aminoacyl-tRNA ligase activity	3.63E-03
21	GO:0016759: cellulose synthase activity	5.30E-03
22	GO:0003684: damaged DNA binding	5.30E-03
23	GO:0003723: RNA binding	5.39E-03
24	GO:0008483: transaminase activity	5.52E-03
25	GO:0102483: scopolin beta-glucosidase activity	6.69E-03
26	GO:0003924: GTPase activity	7.08E-03
27	GO:0004222: metalloendopeptidase activity	7.69E-03
28	GO:0003697: single-stranded DNA binding	8.47E-03
29	GO:0008422: beta-glucosidase activity	9.01E-03
30	GO:0004364: glutathione transferase activity	9.83E-03
31	GO:0043621: protein self-association	1.07E-02
32	GO:0016740: transferase activity	1.54E-02
33	GO:0003779: actin binding	1.57E-02
34	GO:0016829: lyase activity	1.99E-02
35	GO:0030170: pyridoxal phosphate binding	2.02E-02
36	GO:0005525: GTP binding	2.08E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009513: etioplast	1.07E-04
5	GO:0009509: chromoplast	1.84E-04
6	GO:0009707: chloroplast outer membrane	4.98E-04
7	GO:0009501: amyloplast	9.08E-04
8	GO:0009507: chloroplast	9.19E-04
9	GO:0009570: chloroplast stroma	1.48E-02
10	GO:0031969: chloroplast membrane	3.76E-02
11	GO:0005743: mitochondrial inner membrane	4.71E-02