Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G12250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010055: atrichoblast differentiation0.00E+00
2GO:1902001: fatty acid transmembrane transport0.00E+00
3GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
4GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
5GO:0018063: cytochrome c-heme linkage0.00E+00
6GO:0010793: regulation of mRNA export from nucleus0.00E+00
7GO:0032107: regulation of response to nutrient levels1.14E-04
8GO:0010230: alternative respiration1.14E-04
9GO:0010482: regulation of epidermal cell division1.14E-04
10GO:1900384: regulation of flavonol biosynthetic process1.14E-04
11GO:0071668: plant-type cell wall assembly2.65E-04
12GO:0080151: positive regulation of salicylic acid mediated signaling pathway2.65E-04
13GO:0055088: lipid homeostasis2.65E-04
14GO:0050684: regulation of mRNA processing2.65E-04
15GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex2.65E-04
16GO:0015908: fatty acid transport2.65E-04
17GO:0000719: photoreactive repair2.65E-04
18GO:0051707: response to other organism2.87E-04
19GO:0009636: response to toxic substance3.35E-04
20GO:0006874: cellular calcium ion homeostasis4.22E-04
21GO:0010366: negative regulation of ethylene biosynthetic process4.38E-04
22GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway4.38E-04
23GO:0006048: UDP-N-acetylglucosamine biosynthetic process4.38E-04
24GO:0032784: regulation of DNA-templated transcription, elongation4.38E-04
25GO:0006020: inositol metabolic process6.29E-04
26GO:0048830: adventitious root development8.35E-04
27GO:0051567: histone H3-K9 methylation8.35E-04
28GO:0006623: protein targeting to vacuole8.60E-04
29GO:0031365: N-terminal protein amino acid modification1.05E-03
30GO:0016094: polyprenol biosynthetic process1.05E-03
31GO:0046283: anthocyanin-containing compound metabolic process1.05E-03
32GO:0009643: photosynthetic acclimation1.29E-03
33GO:0009759: indole glucosinolate biosynthetic process1.29E-03
34GO:0006777: Mo-molybdopterin cofactor biosynthetic process1.29E-03
35GO:0009627: systemic acquired resistance1.45E-03
36GO:1900057: positive regulation of leaf senescence1.81E-03
37GO:0000122: negative regulation of transcription from RNA polymerase II promoter1.81E-03
38GO:0016559: peroxisome fission2.09E-03
39GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline2.09E-03
40GO:0017004: cytochrome complex assembly2.39E-03
41GO:0010208: pollen wall assembly2.39E-03
42GO:0022900: electron transport chain2.39E-03
43GO:0006997: nucleus organization2.39E-03
44GO:0010204: defense response signaling pathway, resistance gene-independent2.39E-03
45GO:0010112: regulation of systemic acquired resistance2.70E-03
46GO:0009688: abscisic acid biosynthetic process3.36E-03
47GO:0009641: shade avoidance3.36E-03
48GO:0009870: defense response signaling pathway, resistance gene-dependent3.36E-03
49GO:0006032: chitin catabolic process3.36E-03
50GO:0048765: root hair cell differentiation3.71E-03
51GO:0009684: indoleacetic acid biosynthetic process3.71E-03
52GO:0009682: induced systemic resistance3.71E-03
53GO:0052544: defense response by callose deposition in cell wall3.71E-03
54GO:0000266: mitochondrial fission4.06E-03
55GO:0045037: protein import into chloroplast stroma4.06E-03
56GO:0030048: actin filament-based movement4.43E-03
57GO:0000162: tryptophan biosynthetic process5.61E-03
58GO:0080147: root hair cell development6.03E-03
59GO:0051302: regulation of cell division6.45E-03
60GO:0010026: trichome differentiation6.45E-03
61GO:0043622: cortical microtubule organization6.45E-03
62GO:0016998: cell wall macromolecule catabolic process6.89E-03
63GO:0009269: response to desiccation6.89E-03
64GO:0007005: mitochondrion organization7.34E-03
65GO:0071456: cellular response to hypoxia7.34E-03
66GO:0006012: galactose metabolic process7.79E-03
67GO:0009411: response to UV7.79E-03
68GO:0040008: regulation of growth8.60E-03
69GO:0010150: leaf senescence9.00E-03
70GO:0010118: stomatal movement9.23E-03
71GO:0042391: regulation of membrane potential9.23E-03
72GO:0010182: sugar mediated signaling pathway9.73E-03
73GO:0048868: pollen tube development9.73E-03
74GO:0006520: cellular amino acid metabolic process9.73E-03
75GO:0009416: response to light stimulus1.01E-02
76GO:0007166: cell surface receptor signaling pathway1.03E-02
77GO:0009611: response to wounding1.03E-02
78GO:0006891: intra-Golgi vesicle-mediated transport1.13E-02
79GO:0051607: defense response to virus1.40E-02
80GO:0009615: response to virus1.46E-02
81GO:0006970: response to osmotic stress1.51E-02
82GO:0006888: ER to Golgi vesicle-mediated transport1.64E-02
83GO:0010200: response to chitin1.79E-02
84GO:0010311: lateral root formation1.83E-02
85GO:0009407: toxin catabolic process1.89E-02
86GO:0009631: cold acclimation1.96E-02
87GO:0048527: lateral root development1.96E-02
88GO:0006886: intracellular protein transport2.14E-02
89GO:0042742: defense response to bacterium2.45E-02
90GO:0010114: response to red light2.50E-02
91GO:0009751: response to salicylic acid2.53E-02
92GO:0009408: response to heat2.56E-02
93GO:0042546: cell wall biogenesis2.57E-02
94GO:0009965: leaf morphogenesis2.72E-02
95GO:0009753: response to jasmonic acid2.75E-02
96GO:0006855: drug transmembrane transport2.79E-02
97GO:0009664: plant-type cell wall organization2.94E-02
98GO:0042538: hyperosmotic salinity response2.94E-02
99GO:0006486: protein glycosylation3.09E-02
100GO:0009736: cytokinin-activated signaling pathway3.09E-02
101GO:0050832: defense response to fungus3.12E-02
102GO:0010224: response to UV-B3.17E-02
103GO:0006508: proteolysis3.28E-02
104GO:0015031: protein transport3.31E-02
105GO:0009626: plant-type hypersensitive response3.65E-02
106GO:0009620: response to fungus3.73E-02
107GO:0009742: brassinosteroid mediated signaling pathway4.14E-02
108GO:0009058: biosynthetic process4.84E-02
RankGO TermAdjusted P value
1GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
2GO:0102867: molybdenum cofactor sulfurtransferase activity0.00E+00
3GO:0015245: fatty acid transporter activity1.14E-04
4GO:0090353: polygalacturonase inhibitor activity1.14E-04
5GO:0047940: glucuronokinase activity1.14E-04
6GO:0009000: selenocysteine lyase activity1.14E-04
7GO:0050736: O-malonyltransferase activity2.65E-04
8GO:0005217: intracellular ligand-gated ion channel activity3.08E-04
9GO:0004970: ionotropic glutamate receptor activity3.08E-04
10GO:0008265: Mo-molybdopterin cofactor sulfurase activity4.38E-04
11GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity4.38E-04
12GO:0043169: cation binding4.38E-04
13GO:0032403: protein complex binding4.38E-04
14GO:0035529: NADH pyrophosphatase activity6.29E-04
15GO:0009916: alternative oxidase activity8.35E-04
16GO:0047631: ADP-ribose diphosphatase activity1.05E-03
17GO:0030151: molybdenum ion binding1.05E-03
18GO:0016773: phosphotransferase activity, alcohol group as acceptor1.05E-03
19GO:0002094: polyprenyltransferase activity1.05E-03
20GO:0000210: NAD+ diphosphatase activity1.29E-03
21GO:0008375: acetylglucosaminyltransferase activity1.45E-03
22GO:0030247: polysaccharide binding1.53E-03
23GO:0003978: UDP-glucose 4-epimerase activity1.54E-03
24GO:0004656: procollagen-proline 4-dioxygenase activity1.54E-03
25GO:0008235: metalloexopeptidase activity1.81E-03
26GO:0004033: aldo-keto reductase (NADP) activity2.09E-03
27GO:0004568: chitinase activity3.36E-03
28GO:0004177: aminopeptidase activity3.71E-03
29GO:0003774: motor activity4.81E-03
30GO:0008266: poly(U) RNA binding4.81E-03
31GO:0030552: cAMP binding5.21E-03
32GO:0030553: cGMP binding5.21E-03
33GO:0005509: calcium ion binding5.40E-03
34GO:0001046: core promoter sequence-specific DNA binding6.03E-03
35GO:0005216: ion channel activity6.45E-03
36GO:0030170: pyridoxal phosphate binding7.24E-03
37GO:0004499: N,N-dimethylaniline monooxygenase activity8.26E-03
38GO:0005249: voltage-gated potassium channel activity9.23E-03
39GO:0030551: cyclic nucleotide binding9.23E-03
40GO:0005199: structural constituent of cell wall9.73E-03
41GO:0016791: phosphatase activity1.29E-02
42GO:0008483: transaminase activity1.35E-02
43GO:0004806: triglyceride lipase activity1.64E-02
44GO:0004721: phosphoprotein phosphatase activity1.64E-02
45GO:0046872: metal ion binding1.71E-02
46GO:0015238: drug transmembrane transporter activity1.83E-02
47GO:0030145: manganese ion binding1.96E-02
48GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.09E-02
49GO:0004871: signal transducer activity2.18E-02
50GO:0050661: NADP binding2.29E-02
51GO:0004364: glutathione transferase activity2.43E-02
52GO:0051537: 2 iron, 2 sulfur cluster binding2.65E-02
53GO:0005198: structural molecule activity2.72E-02
54GO:0051287: NAD binding2.87E-02
55GO:0016298: lipase activity3.17E-02
56GO:0016757: transferase activity, transferring glycosyl groups3.80E-02
57GO:0016746: transferase activity, transferring acyl groups4.06E-02
RankGO TermAdjusted P value
1GO:0042406: extrinsic component of endoplasmic reticulum membrane4.38E-04
2GO:0009530: primary cell wall4.38E-04
3GO:0031965: nuclear membrane8.60E-04
4GO:0016021: integral component of membrane8.66E-04
5GO:0000813: ESCRT I complex1.05E-03
6GO:0005794: Golgi apparatus2.53E-03
7GO:0017119: Golgi transport complex3.36E-03
8GO:0005802: trans-Golgi network4.28E-03
9GO:0005795: Golgi stack5.21E-03
10GO:0070469: respiratory chain6.45E-03
11GO:0005741: mitochondrial outer membrane6.89E-03
12GO:0019898: extrinsic component of membrane1.08E-02
13GO:0009504: cell plate1.08E-02
14GO:0005778: peroxisomal membrane1.35E-02
15GO:0031225: anchored component of membrane1.77E-02
16GO:0005768: endosome2.15E-02
17GO:0005743: mitochondrial inner membrane2.38E-02
18GO:0005829: cytosol2.81E-02
19GO:0005635: nuclear envelope3.25E-02
20GO:0005887: integral component of plasma membrane3.48E-02
21GO:0012505: endomembrane system3.89E-02
22GO:0009706: chloroplast inner membrane3.98E-02
23GO:0005789: endoplasmic reticulum membrane4.15E-02
24GO:0005618: cell wall4.73E-02
<
Gene type



Gene DE type