co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G11890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032499: detection of peptidoglycan	0.00E+00
2	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
3	GO:0071327: cellular response to trehalose stimulus	0.00E+00
4	GO:1900367: positive regulation of defense response to insect	0.00E+00
5	GO:0002764: immune response-regulating signaling pathway	0.00E+00
6	GO:0006468: protein phosphorylation	1.69E-05
7	GO:0031348: negative regulation of defense response	1.34E-04
8	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.34E-04
9	GO:0046777: protein autophosphorylation	1.43E-04
10	GO:0031930: mitochondria-nucleus signaling pathway	1.56E-04
11	GO:0010365: positive regulation of ethylene biosynthetic process	2.70E-04
12	GO:0015969: guanosine tetraphosphate metabolic process	2.70E-04
13	GO:0051180: vitamin transport	2.70E-04
14	GO:0030974: thiamine pyrophosphate transport	2.70E-04
15	GO:1901183: positive regulation of camalexin biosynthetic process	2.70E-04
16	GO:0032491: detection of molecule of fungal origin	2.70E-04
17	GO:0009751: response to salicylic acid	2.85E-04
18	GO:0009626: plant-type hypersensitive response	4.16E-04
19	GO:0006904: vesicle docking involved in exocytosis	4.43E-04
20	GO:1900426: positive regulation of defense response to bacterium	4.56E-04
21	GO:0046939: nucleotide phosphorylation	5.94E-04
22	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.94E-04
23	GO:0080185: effector dependent induction by symbiont of host immune response	5.94E-04
24	GO:0010618: aerenchyma formation	5.94E-04
25	GO:1902066: regulation of cell wall pectin metabolic process	5.94E-04
26	GO:0015893: drug transport	5.94E-04
27	GO:0045732: positive regulation of protein catabolic process	5.94E-04
28	GO:0043066: negative regulation of apoptotic process	5.94E-04
29	GO:0015865: purine nucleotide transport	5.94E-04
30	GO:0010541: acropetal auxin transport	5.94E-04
31	GO:0019725: cellular homeostasis	5.94E-04
32	GO:0010200: response to chitin	7.10E-04
33	GO:0009817: defense response to fungus, incompatible interaction	7.22E-04
34	GO:0006499: N-terminal protein myristoylation	8.15E-04
35	GO:0009266: response to temperature stimulus	8.95E-04
36	GO:0051176: positive regulation of sulfur metabolic process	9.62E-04
37	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	9.62E-04
38	GO:0010498: proteasomal protein catabolic process	9.62E-04
39	GO:1901672: positive regulation of systemic acquired resistance	9.62E-04
40	GO:0048586: regulation of long-day photoperiodism, flowering	9.62E-04
41	GO:0032922: circadian regulation of gene expression	9.62E-04
42	GO:0016045: detection of bacterium	9.62E-04
43	GO:0034051: negative regulation of plant-type hypersensitive response	9.62E-04
44	GO:0010359: regulation of anion channel activity	9.62E-04
45	GO:0061158: 3'-UTR-mediated mRNA destabilization	9.62E-04
46	GO:0010167: response to nitrate	9.99E-04
47	GO:0042742: defense response to bacterium	1.13E-03
48	GO:0006887: exocytosis	1.20E-03
49	GO:0009863: salicylic acid mediated signaling pathway	1.23E-03
50	GO:0000187: activation of MAPK activity	1.38E-03
51	GO:0046902: regulation of mitochondrial membrane permeability	1.38E-03
52	GO:0010104: regulation of ethylene-activated signaling pathway	1.38E-03
53	GO:0072583: clathrin-dependent endocytosis	1.38E-03
54	GO:0071323: cellular response to chitin	1.38E-03
55	GO:0010017: red or far-red light signaling pathway	1.62E-03
56	GO:0016226: iron-sulfur cluster assembly	1.62E-03
57	GO:0060548: negative regulation of cell death	1.84E-03
58	GO:0045227: capsule polysaccharide biosynthetic process	1.84E-03
59	GO:0033358: UDP-L-arabinose biosynthetic process	1.84E-03
60	GO:0010508: positive regulation of autophagy	1.84E-03
61	GO:0071219: cellular response to molecule of bacterial origin	1.84E-03
62	GO:0080142: regulation of salicylic acid biosynthetic process	1.84E-03
63	GO:0006486: protein glycosylation	1.94E-03
64	GO:0018344: protein geranylgeranylation	2.35E-03
65	GO:0010225: response to UV-C	2.35E-03
66	GO:0009247: glycolipid biosynthetic process	2.35E-03
67	GO:0009620: response to fungus	2.70E-03
68	GO:0010942: positive regulation of cell death	2.90E-03
69	GO:0010337: regulation of salicylic acid metabolic process	2.90E-03
70	GO:0007264: small GTPase mediated signal transduction	3.18E-03
71	GO:2000037: regulation of stomatal complex patterning	3.49E-03
72	GO:0010310: regulation of hydrogen peroxide metabolic process	3.49E-03
73	GO:0009423: chorismate biosynthetic process	3.49E-03
74	GO:0045926: negative regulation of growth	3.49E-03
75	GO:0070370: cellular heat acclimation	4.12E-03
76	GO:1900057: positive regulation of leaf senescence	4.12E-03
77	GO:0001666: response to hypoxia	4.30E-03
78	GO:0009816: defense response to bacterium, incompatible interaction	4.55E-03
79	GO:0045010: actin nucleation	4.77E-03
80	GO:0030162: regulation of proteolysis	4.77E-03
81	GO:0006491: N-glycan processing	4.77E-03
82	GO:0019375: galactolipid biosynthetic process	4.77E-03
83	GO:0009627: systemic acquired resistance	4.80E-03
84	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.47E-03
85	GO:0010099: regulation of photomorphogenesis	5.47E-03
86	GO:0009932: cell tip growth	5.47E-03
87	GO:0010204: defense response signaling pathway, resistance gene-independent	5.47E-03
88	GO:0010112: regulation of systemic acquired resistance	6.20E-03
89	GO:0048268: clathrin coat assembly	6.96E-03
90	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	6.96E-03
91	GO:0009867: jasmonic acid mediated signaling pathway	7.11E-03
92	GO:0009617: response to bacterium	7.61E-03
93	GO:0015770: sucrose transport	8.58E-03
94	GO:0009073: aromatic amino acid family biosynthetic process	8.58E-03
95	GO:0051707: response to other organism	9.18E-03
96	GO:0008361: regulation of cell size	9.44E-03
97	GO:0002213: defense response to insect	9.44E-03
98	GO:0015706: nitrate transport	9.44E-03
99	GO:0010105: negative regulation of ethylene-activated signaling pathway	9.44E-03
100	GO:0010229: inflorescence development	1.03E-02
101	GO:0055046: microgametogenesis	1.03E-02
102	GO:0006829: zinc II ion transport	1.03E-02
103	GO:0009785: blue light signaling pathway	1.03E-02
104	GO:0006626: protein targeting to mitochondrion	1.03E-02
105	GO:0006855: drug transmembrane transport	1.07E-02
106	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.11E-02
107	GO:0034605: cellular response to heat	1.12E-02
108	GO:0002237: response to molecule of bacterial origin	1.12E-02
109	GO:0007034: vacuolar transport	1.12E-02
110	GO:0006812: cation transport	1.15E-02
111	GO:0046854: phosphatidylinositol phosphorylation	1.22E-02
112	GO:0009225: nucleotide-sugar metabolic process	1.22E-02
113	GO:0005985: sucrose metabolic process	1.22E-02
114	GO:0009611: response to wounding	1.38E-02
115	GO:0006487: protein N-linked glycosylation	1.42E-02
116	GO:0045333: cellular respiration	1.42E-02
117	GO:0035556: intracellular signal transduction	1.45E-02
118	GO:0009695: jasmonic acid biosynthetic process	1.52E-02
119	GO:0007165: signal transduction	1.59E-02
120	GO:0009269: response to desiccation	1.62E-02
121	GO:0003333: amino acid transmembrane transport	1.62E-02
122	GO:0071456: cellular response to hypoxia	1.73E-02
123	GO:0009814: defense response, incompatible interaction	1.73E-02
124	GO:0045892: negative regulation of transcription, DNA-templated	1.79E-02
125	GO:0018105: peptidyl-serine phosphorylation	1.82E-02
126	GO:0009625: response to insect	1.84E-02
127	GO:0010227: floral organ abscission	1.84E-02
128	GO:0006012: galactose metabolic process	1.84E-02
129	GO:0006952: defense response	1.88E-02
130	GO:0055085: transmembrane transport	1.92E-02
131	GO:0006284: base-excision repair	1.95E-02
132	GO:0009561: megagametogenesis	1.95E-02
133	GO:0009306: protein secretion	1.95E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.07E-02
135	GO:0009408: response to heat	2.28E-02
136	GO:0006885: regulation of pH	2.31E-02
137	GO:0009845: seed germination	2.40E-02
138	GO:0048364: root development	2.41E-02
139	GO:0048544: recognition of pollen	2.43E-02
140	GO:0009749: response to glucose	2.55E-02
141	GO:0016032: viral process	2.81E-02
142	GO:0010150: leaf senescence	3.06E-02
143	GO:0019760: glucosinolate metabolic process	3.07E-02
144	GO:0051607: defense response to virus	3.34E-02
145	GO:0016579: protein deubiquitination	3.34E-02
146	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.42E-02
147	GO:0009615: response to virus	3.48E-02
148	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.63E-02
149	GO:0042128: nitrate assimilation	3.77E-02
150	GO:0006906: vesicle fusion	3.77E-02
151	GO:0006950: response to stress	3.91E-02
152	GO:0009737: response to abscisic acid	4.41E-02
153	GO:0010043: response to zinc ion	4.66E-02
154	GO:0007568: aging	4.66E-02
155	GO:0009631: cold acclimation	4.66E-02
156	GO:0048527: lateral root development	4.66E-02
157	GO:0010119: regulation of stomatal movement	4.66E-02
158	GO:0006865: amino acid transport	4.82E-02
159	GO:0045087: innate immune response	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
3	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
4	GO:0010290: chlorophyll catabolite transmembrane transporter activity	0.00E+00
5	GO:0005522: profilin binding	0.00E+00
6	GO:0015431: glutathione S-conjugate-exporting ATPase activity	0.00E+00
7	GO:0004107: chorismate synthase activity	0.00E+00
8	GO:0005212: structural constituent of eye lens	0.00E+00
9	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
10	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
11	GO:2001080: chitosan binding	0.00E+00
12	GO:0016301: kinase activity	9.56E-06
13	GO:0004674: protein serine/threonine kinase activity	2.61E-05
14	GO:0019199: transmembrane receptor protein kinase activity	4.90E-05
15	GO:0005524: ATP binding	6.17E-05
16	GO:0032050: clathrin heavy chain binding	2.70E-04
17	GO:1901149: salicylic acid binding	2.70E-04
18	GO:0090422: thiamine pyrophosphate transporter activity	2.70E-04
19	GO:0004662: CAAX-protein geranylgeranyltransferase activity	2.70E-04
20	GO:0046481: digalactosyldiacylglycerol synthase activity	2.70E-04
21	GO:0048531: beta-1,3-galactosyltransferase activity	5.94E-04
22	GO:0008728: GTP diphosphokinase activity	5.94E-04
23	GO:0008559: xenobiotic-transporting ATPase activity	6.14E-04
24	GO:0005515: protein binding	7.83E-04
25	GO:0046423: allene-oxide cyclase activity	9.62E-04
26	GO:0043424: protein histidine kinase binding	1.35E-03
27	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	1.38E-03
28	GO:0019201: nucleotide kinase activity	1.38E-03
29	GO:0035250: UDP-galactosyltransferase activity	1.38E-03
30	GO:0009916: alternative oxidase activity	1.84E-03
31	GO:0050373: UDP-arabinose 4-epimerase activity	1.84E-03
32	GO:0005471: ATP:ADP antiporter activity	2.35E-03
33	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.35E-03
34	GO:0008725: DNA-3-methyladenine glycosylase activity	2.35E-03
35	GO:0004040: amidase activity	2.35E-03
36	GO:0005525: GTP binding	2.53E-03
37	GO:0005509: calcium ion binding	3.25E-03
38	GO:0004559: alpha-mannosidase activity	3.49E-03
39	GO:0003978: UDP-glucose 4-epimerase activity	3.49E-03
40	GO:0004017: adenylate kinase activity	3.49E-03
41	GO:0003730: mRNA 3'-UTR binding	3.49E-03
42	GO:0008506: sucrose:proton symporter activity	4.12E-03
43	GO:0005215: transporter activity	4.65E-03
44	GO:0004708: MAP kinase kinase activity	4.77E-03
45	GO:0008375: acetylglucosaminyltransferase activity	4.80E-03
46	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.80E-03
47	GO:0004683: calmodulin-dependent protein kinase activity	5.06E-03
48	GO:0004430: 1-phosphatidylinositol 4-kinase activity	5.47E-03
49	GO:0015238: drug transmembrane transporter activity	5.89E-03
50	GO:0071949: FAD binding	6.20E-03
51	GO:0015112: nitrate transmembrane transporter activity	6.96E-03
52	GO:0004568: chitinase activity	7.75E-03
53	GO:0005545: 1-phosphatidylinositol binding	7.75E-03
54	GO:0008047: enzyme activator activity	7.75E-03
55	GO:0004713: protein tyrosine kinase activity	7.75E-03
56	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.25E-03
57	GO:0008515: sucrose transmembrane transporter activity	8.58E-03
58	GO:0005543: phospholipid binding	8.58E-03
59	GO:0008378: galactosyltransferase activity	9.44E-03
60	GO:0031072: heat shock protein binding	1.03E-02
61	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.03E-02
62	GO:0043531: ADP binding	1.19E-02
63	GO:0008061: chitin binding	1.22E-02
64	GO:0031625: ubiquitin protein ligase binding	1.37E-02
65	GO:0003954: NADH dehydrogenase activity	1.42E-02
66	GO:0051087: chaperone binding	1.52E-02
67	GO:0008324: cation transmembrane transporter activity	1.52E-02
68	GO:0033612: receptor serine/threonine kinase binding	1.62E-02
69	GO:0005451: monovalent cation:proton antiporter activity	2.19E-02
70	GO:0046873: metal ion transmembrane transporter activity	2.31E-02
71	GO:0030276: clathrin binding	2.31E-02
72	GO:0015299: solute:proton antiporter activity	2.43E-02
73	GO:0010181: FMN binding	2.43E-02
74	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.68E-02
75	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.85E-02
76	GO:0015297: antiporter activity	2.92E-02
77	GO:0015385: sodium:proton antiporter activity	2.94E-02
78	GO:0051015: actin filament binding	2.94E-02
79	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.21E-02
80	GO:0004806: triglyceride lipase activity	3.91E-02
81	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.89E-07
2	GO:0005911: cell-cell junction	2.70E-04
3	GO:0005953: CAAX-protein geranylgeranyltransferase complex	2.70E-04
4	GO:0031304: intrinsic component of mitochondrial inner membrane	5.94E-04
5	GO:0005901: caveola	5.94E-04
6	GO:0030139: endocytic vesicle	9.62E-04
7	GO:0000145: exocyst	3.18E-03
8	GO:0000325: plant-type vacuole	6.49E-03
9	GO:0005740: mitochondrial envelope	7.75E-03
10	GO:0030125: clathrin vesicle coat	7.75E-03
11	GO:0016021: integral component of membrane	8.10E-03
12	GO:0090404: pollen tube tip	8.58E-03
13	GO:0005758: mitochondrial intermembrane space	1.42E-02
14	GO:0070469: respiratory chain	1.52E-02
15	GO:0005905: clathrin-coated pit	1.62E-02
16	GO:0005774: vacuolar membrane	1.66E-02
17	GO:0005794: Golgi apparatus	1.68E-02
18	GO:0030136: clathrin-coated vesicle	2.07E-02
19	GO:0005743: mitochondrial inner membrane	2.08E-02
20	GO:0005654: nucleoplasm	2.16E-02
21	GO:0005770: late endosome	2.31E-02
22	GO:0032580: Golgi cisterna membrane	3.07E-02
23	GO:0019005: SCF ubiquitin ligase complex	4.21E-02
24	GO:0009707: chloroplast outer membrane	4.21E-02