Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G11780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0031222: arabinan catabolic process0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
5GO:0090071: negative regulation of ribosome biogenesis0.00E+00
6GO:0001778: plasma membrane repair0.00E+00
7GO:0000372: Group I intron splicing0.00E+00
8GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:1903224: regulation of endodermal cell differentiation0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0080127: fruit septum development0.00E+00
12GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
13GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
14GO:0006573: valine metabolic process0.00E+00
15GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
16GO:0045184: establishment of protein localization0.00E+00
17GO:0006907: pinocytosis0.00E+00
18GO:0046620: regulation of organ growth2.36E-06
19GO:0009451: RNA modification6.81E-06
20GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.78E-05
21GO:0010027: thylakoid membrane organization9.89E-05
22GO:0009658: chloroplast organization1.70E-04
23GO:1900865: chloroplast RNA modification2.01E-04
24GO:0040008: regulation of growth2.18E-04
25GO:0009416: response to light stimulus3.81E-04
26GO:0016123: xanthophyll biosynthetic process4.43E-04
27GO:0048497: maintenance of floral organ identity4.43E-04
28GO:0009793: embryo development ending in seed dormancy4.72E-04
29GO:0009733: response to auxin5.94E-04
30GO:0042793: transcription from plastid promoter6.13E-04
31GO:0016554: cytidine to uridine editing6.13E-04
32GO:1902458: positive regulation of stomatal opening8.03E-04
33GO:0015904: tetracycline transport8.03E-04
34GO:0006419: alanyl-tRNA aminoacylation8.03E-04
35GO:0042659: regulation of cell fate specification8.03E-04
36GO:0070509: calcium ion import8.03E-04
37GO:0006438: valyl-tRNA aminoacylation8.03E-04
38GO:0090558: plant epidermis development8.03E-04
39GO:0043266: regulation of potassium ion transport8.03E-04
40GO:0010063: positive regulation of trichoblast fate specification8.03E-04
41GO:0010480: microsporocyte differentiation8.03E-04
42GO:0042759: long-chain fatty acid biosynthetic process8.03E-04
43GO:0006551: leucine metabolic process8.03E-04
44GO:2000021: regulation of ion homeostasis8.03E-04
45GO:0035987: endodermal cell differentiation8.03E-04
46GO:0009082: branched-chain amino acid biosynthetic process8.10E-04
47GO:0009099: valine biosynthetic process8.10E-04
48GO:0030488: tRNA methylation8.10E-04
49GO:0048437: floral organ development1.03E-03
50GO:2000070: regulation of response to water deprivation1.28E-03
51GO:0009097: isoleucine biosynthetic process1.57E-03
52GO:0032544: plastid translation1.57E-03
53GO:1903426: regulation of reactive oxygen species biosynthetic process1.74E-03
54GO:0006568: tryptophan metabolic process1.74E-03
55GO:2000123: positive regulation of stomatal complex development1.74E-03
56GO:0006420: arginyl-tRNA aminoacylation1.74E-03
57GO:0060359: response to ammonium ion1.74E-03
58GO:0048255: mRNA stabilization1.74E-03
59GO:1900871: chloroplast mRNA modification1.74E-03
60GO:0006432: phenylalanyl-tRNA aminoacylation1.74E-03
61GO:0018026: peptidyl-lysine monomethylation1.74E-03
62GO:0080009: mRNA methylation1.74E-03
63GO:0009786: regulation of asymmetric cell division1.74E-03
64GO:0046740: transport of virus in host, cell to cell1.74E-03
65GO:0031648: protein destabilization1.74E-03
66GO:0001682: tRNA 5'-leader removal1.74E-03
67GO:0009734: auxin-activated signaling pathway1.86E-03
68GO:0048507: meristem development1.88E-03
69GO:0000373: Group II intron splicing1.88E-03
70GO:0010305: leaf vascular tissue pattern formation1.93E-03
71GO:0010182: sugar mediated signaling pathway1.93E-03
72GO:0009638: phototropism2.23E-03
73GO:0009098: leucine biosynthetic process2.23E-03
74GO:0009926: auxin polar transport2.26E-03
75GO:0009790: embryo development2.86E-03
76GO:0045910: negative regulation of DNA recombination2.88E-03
77GO:0033591: response to L-ascorbic acid2.88E-03
78GO:0090708: specification of plant organ axis polarity2.88E-03
79GO:0090153: regulation of sphingolipid biosynthetic process2.88E-03
80GO:0043157: response to cation stress2.88E-03
81GO:0010371: regulation of gibberellin biosynthetic process4.20E-03
82GO:0010071: root meristem specification4.20E-03
83GO:0051513: regulation of monopolar cell growth4.20E-03
84GO:0007231: osmosensory signaling pathway4.20E-03
85GO:0009102: biotin biosynthetic process4.20E-03
86GO:0051639: actin filament network formation4.20E-03
87GO:0032456: endocytic recycling4.20E-03
88GO:0010239: chloroplast mRNA processing4.20E-03
89GO:0006612: protein targeting to membrane4.20E-03
90GO:0019048: modulation by virus of host morphology or physiology4.20E-03
91GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.20E-03
92GO:0046739: transport of virus in multicellular host4.20E-03
93GO:0006164: purine nucleotide biosynthetic process4.20E-03
94GO:0031048: chromatin silencing by small RNA4.20E-03
95GO:0043572: plastid fission4.20E-03
96GO:1990019: protein storage vacuole organization4.20E-03
97GO:0016556: mRNA modification4.20E-03
98GO:0010207: photosystem II assembly4.47E-03
99GO:0010020: chloroplast fission4.47E-03
100GO:0007166: cell surface receptor signaling pathway4.88E-03
101GO:0070588: calcium ion transmembrane transport5.03E-03
102GO:0051764: actin crosslink formation5.67E-03
103GO:0042274: ribosomal small subunit biogenesis5.67E-03
104GO:0009765: photosynthesis, light harvesting5.67E-03
105GO:0030104: water homeostasis5.67E-03
106GO:0033500: carbohydrate homeostasis5.67E-03
107GO:2000038: regulation of stomatal complex development5.67E-03
108GO:0051567: histone H3-K9 methylation5.67E-03
109GO:0008295: spermidine biosynthetic process5.67E-03
110GO:0009755: hormone-mediated signaling pathway5.67E-03
111GO:0051017: actin filament bundle assembly6.23E-03
112GO:0005992: trehalose biosynthetic process6.23E-03
113GO:0010438: cellular response to sulfur starvation7.30E-03
114GO:0080110: sporopollenin biosynthetic process7.30E-03
115GO:0010375: stomatal complex patterning7.30E-03
116GO:0045038: protein import into chloroplast thylakoid membrane7.30E-03
117GO:0016120: carotene biosynthetic process7.30E-03
118GO:0009959: negative gravitropism9.08E-03
119GO:0009913: epidermal cell differentiation9.08E-03
120GO:1902456: regulation of stomatal opening9.08E-03
121GO:0010190: cytochrome b6f complex assembly9.08E-03
122GO:0033365: protein localization to organelle9.08E-03
123GO:0003006: developmental process involved in reproduction9.08E-03
124GO:0016458: gene silencing9.08E-03
125GO:0018258: protein O-linked glycosylation via hydroxyproline9.08E-03
126GO:0010405: arabinogalactan protein metabolic process9.08E-03
127GO:0009831: plant-type cell wall modification involved in multidimensional cell growth9.09E-03
128GO:0006468: protein phosphorylation9.35E-03
129GO:0006631: fatty acid metabolic process9.72E-03
130GO:0016117: carotenoid biosynthetic process1.08E-02
131GO:0080086: stamen filament development1.10E-02
132GO:0009648: photoperiodism1.10E-02
133GO:2000067: regulation of root morphogenesis1.10E-02
134GO:0042372: phylloquinone biosynthetic process1.10E-02
135GO:0009612: response to mechanical stimulus1.10E-02
136GO:0017148: negative regulation of translation1.10E-02
137GO:2000033: regulation of seed dormancy process1.10E-02
138GO:0031930: mitochondria-nucleus signaling pathway1.10E-02
139GO:0008033: tRNA processing1.16E-02
140GO:0009958: positive gravitropism1.26E-02
141GO:0048528: post-embryonic root development1.30E-02
142GO:0030497: fatty acid elongation1.30E-02
143GO:0010098: suspensor development1.30E-02
144GO:0010444: guard mother cell differentiation1.30E-02
145GO:0006400: tRNA modification1.30E-02
146GO:0015693: magnesium ion transport1.30E-02
147GO:0007018: microtubule-based movement1.35E-02
148GO:0048564: photosystem I assembly1.52E-02
149GO:0010439: regulation of glucosinolate biosynthetic process1.52E-02
150GO:0001522: pseudouridine synthesis1.52E-02
151GO:0009819: drought recovery1.52E-02
152GO:0070413: trehalose metabolism in response to stress1.52E-02
153GO:0055075: potassium ion homeostasis1.52E-02
154GO:0000105: histidine biosynthetic process1.52E-02
155GO:0010583: response to cyclopentenone1.66E-02
156GO:0016032: viral process1.66E-02
157GO:0045892: negative regulation of transcription, DNA-templated1.70E-02
158GO:0071482: cellular response to light stimulus1.75E-02
159GO:0015996: chlorophyll catabolic process1.75E-02
160GO:0007186: G-protein coupled receptor signaling pathway1.75E-02
161GO:0010497: plasmodesmata-mediated intercellular transport1.75E-02
162GO:0009657: plastid organization1.75E-02
163GO:0009828: plant-type cell wall loosening1.89E-02
164GO:0051865: protein autoubiquitination1.99E-02
165GO:0000902: cell morphogenesis1.99E-02
166GO:0051607: defense response to virus2.13E-02
167GO:0006779: porphyrin-containing compound biosynthetic process2.25E-02
168GO:2000280: regulation of root development2.25E-02
169GO:0031425: chloroplast RNA processing2.25E-02
170GO:0016042: lipid catabolic process2.25E-02
171GO:0006298: mismatch repair2.51E-02
172GO:0006949: syncytium formation2.51E-02
173GO:0031627: telomeric loop formation2.51E-02
174GO:0010162: seed dormancy process2.51E-02
175GO:0009299: mRNA transcription2.51E-02
176GO:0006782: protoporphyrinogen IX biosynthetic process2.51E-02
177GO:0030422: production of siRNA involved in RNA interference2.51E-02
178GO:0048829: root cap development2.51E-02
179GO:0009641: shade avoidance2.51E-02
180GO:0006397: mRNA processing2.54E-02
181GO:0009742: brassinosteroid mediated signaling pathway2.66E-02
182GO:0015995: chlorophyll biosynthetic process2.67E-02
183GO:0006816: calcium ion transport2.78E-02
184GO:0009073: aromatic amino acid family biosynthetic process2.78E-02
185GO:0043085: positive regulation of catalytic activity2.78E-02
186GO:0009773: photosynthetic electron transport in photosystem I2.78E-02
187GO:0009682: induced systemic resistance2.78E-02
188GO:0006415: translational termination2.78E-02
189GO:0048229: gametophyte development2.78E-02
190GO:0010105: negative regulation of ethylene-activated signaling pathway3.06E-02
191GO:0045037: protein import into chloroplast stroma3.06E-02
192GO:0010582: floral meristem determinacy3.06E-02
193GO:0000160: phosphorelay signal transduction system3.11E-02
194GO:0009718: anthocyanin-containing compound biosynthetic process3.36E-02
195GO:0010075: regulation of meristem growth3.36E-02
196GO:0009725: response to hormone3.36E-02
197GO:0030048: actin filament-based movement3.36E-02
198GO:0010588: cotyledon vascular tissue pattern formation3.36E-02
199GO:0010628: positive regulation of gene expression3.36E-02
200GO:0010102: lateral root morphogenesis3.36E-02
201GO:0009785: blue light signaling pathway3.36E-02
202GO:0009691: cytokinin biosynthetic process3.36E-02
203GO:0050826: response to freezing3.36E-02
204GO:0048366: leaf development3.46E-02
205GO:0006865: amino acid transport3.58E-02
206GO:0006351: transcription, DNA-templated3.63E-02
207GO:0009934: regulation of meristem structural organization3.66E-02
208GO:0048467: gynoecium development3.66E-02
209GO:0045087: innate immune response3.75E-02
210GO:0090351: seedling development3.97E-02
211GO:0010030: positive regulation of seed germination3.97E-02
212GO:0006071: glycerol metabolic process4.29E-02
213GO:0006833: water transport4.29E-02
214GO:0000162: tryptophan biosynthetic process4.29E-02
215GO:0010025: wax biosynthetic process4.29E-02
216GO:0007010: cytoskeleton organization4.61E-02
217GO:0051302: regulation of cell division4.95E-02
218GO:0006418: tRNA aminoacylation for protein translation4.95E-02
RankGO TermAdjusted P value
1GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
2GO:0004076: biotin synthase activity0.00E+00
3GO:0003937: IMP cyclohydrolase activity0.00E+00
4GO:0019144: ADP-sugar diphosphatase activity0.00E+00
5GO:0071633: dihydroceramidase activity0.00E+00
6GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
7GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
11GO:0015267: channel activity0.00E+00
12GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
13GO:0004519: endonuclease activity2.48E-06
14GO:0003723: RNA binding2.52E-06
15GO:0004176: ATP-dependent peptidase activity1.14E-04
16GO:0001872: (1->3)-beta-D-glucan binding1.77E-04
17GO:0008237: metallopeptidase activity5.88E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity8.03E-04
19GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity8.03E-04
20GO:0047259: glucomannan 4-beta-mannosyltransferase activity8.03E-04
21GO:0005227: calcium activated cation channel activity8.03E-04
22GO:0004425: indole-3-glycerol-phosphate synthase activity8.03E-04
23GO:0080042: ADP-glucose pyrophosphohydrolase activity8.03E-04
24GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.03E-04
25GO:0004813: alanine-tRNA ligase activity8.03E-04
26GO:0003984: acetolactate synthase activity8.03E-04
27GO:0008158: hedgehog receptor activity8.03E-04
28GO:0004832: valine-tRNA ligase activity8.03E-04
29GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity8.03E-04
30GO:0052381: tRNA dimethylallyltransferase activity8.03E-04
31GO:0004222: metalloendopeptidase activity1.23E-03
32GO:0080041: ADP-ribose pyrophosphohydrolase activity1.74E-03
33GO:0043425: bHLH transcription factor binding1.74E-03
34GO:0004814: arginine-tRNA ligase activity1.74E-03
35GO:0004766: spermidine synthase activity1.74E-03
36GO:0008805: carbon-monoxide oxygenase activity1.74E-03
37GO:0008493: tetracycline transporter activity1.74E-03
38GO:0004826: phenylalanine-tRNA ligase activity1.74E-03
39GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.74E-03
40GO:0050736: O-malonyltransferase activity1.74E-03
41GO:1901981: phosphatidylinositol phosphate binding1.74E-03
42GO:0004103: choline kinase activity1.74E-03
43GO:0017118: lipoyltransferase activity1.74E-03
44GO:0003852: 2-isopropylmalate synthase activity1.74E-03
45GO:0004805: trehalose-phosphatase activity2.61E-03
46GO:0004180: carboxypeptidase activity2.88E-03
47GO:0003913: DNA photolyase activity2.88E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity2.88E-03
49GO:0016805: dipeptidase activity2.88E-03
50GO:0051015: actin filament binding2.99E-03
51GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.40E-03
52GO:0000049: tRNA binding3.48E-03
53GO:0016597: amino acid binding3.78E-03
54GO:0005262: calcium channel activity3.96E-03
55GO:0009982: pseudouridine synthase activity3.96E-03
56GO:0031072: heat shock protein binding3.96E-03
57GO:0052655: L-valine transaminase activity4.20E-03
58GO:0016149: translation release factor activity, codon specific4.20E-03
59GO:0052656: L-isoleucine transaminase activity4.20E-03
60GO:0035197: siRNA binding4.20E-03
61GO:0043023: ribosomal large subunit binding4.20E-03
62GO:0052654: L-leucine transaminase activity4.20E-03
63GO:0004300: enoyl-CoA hydratase activity4.20E-03
64GO:0008266: poly(U) RNA binding4.47E-03
65GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed5.67E-03
66GO:0004084: branched-chain-amino-acid transaminase activity5.67E-03
67GO:0019199: transmembrane receptor protein kinase activity5.67E-03
68GO:0046556: alpha-L-arabinofuranosidase activity5.67E-03
69GO:0016279: protein-lysine N-methyltransferase activity5.67E-03
70GO:0005528: FK506 binding6.23E-03
71GO:0016887: ATPase activity6.74E-03
72GO:0030983: mismatched DNA binding9.08E-03
73GO:1990714: hydroxyproline O-galactosyltransferase activity9.08E-03
74GO:0004526: ribonuclease P activity9.08E-03
75GO:0004709: MAP kinase kinase kinase activity9.08E-03
76GO:0016208: AMP binding9.08E-03
77GO:0051753: mannan synthase activity1.10E-02
78GO:0016832: aldehyde-lyase activity1.10E-02
79GO:0004656: procollagen-proline 4-dioxygenase activity1.10E-02
80GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.10E-02
81GO:0043621: protein self-association1.19E-02
82GO:0005524: ATP binding1.21E-02
83GO:0052689: carboxylic ester hydrolase activity1.44E-02
84GO:0008289: lipid binding1.52E-02
85GO:0008173: RNA methyltransferase activity1.75E-02
86GO:0000156: phosphorelay response regulator activity1.78E-02
87GO:0004871: signal transducer activity1.79E-02
88GO:0003777: microtubule motor activity1.80E-02
89GO:0008889: glycerophosphodiester phosphodiesterase activity1.99E-02
90GO:0003747: translation release factor activity1.99E-02
91GO:0004650: polygalacturonase activity2.21E-02
92GO:0008047: enzyme activator activity2.51E-02
93GO:0004674: protein serine/threonine kinase activity2.64E-02
94GO:0030247: polysaccharide binding2.67E-02
95GO:0003691: double-stranded telomeric DNA binding2.78E-02
96GO:0004521: endoribonuclease activity3.06E-02
97GO:0015266: protein channel activity3.36E-02
98GO:0015095: magnesium ion transmembrane transporter activity3.36E-02
99GO:0003774: motor activity3.66E-02
100GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.66E-02
101GO:0003746: translation elongation factor activity3.75E-02
102GO:0003697: single-stranded DNA binding3.75E-02
103GO:0003712: transcription cofactor activity3.97E-02
104GO:0008146: sulfotransferase activity3.97E-02
105GO:0051536: iron-sulfur cluster binding4.61E-02
106GO:0031418: L-ascorbic acid binding4.61E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0005948: acetolactate synthase complex0.00E+00
4GO:0009507: chloroplast9.41E-16
5GO:0009508: plastid chromosome1.16E-06
6GO:0009941: chloroplast envelope4.72E-05
7GO:0009295: nucleoid7.63E-05
8GO:0009570: chloroplast stroma1.31E-04
9GO:0030529: intracellular ribonucleoprotein complex7.04E-04
10GO:0032541: cortical endoplasmic reticulum8.03E-04
11GO:0009501: amyloplast1.28E-03
12GO:0000427: plastid-encoded plastid RNA polymerase complex1.74E-03
13GO:0009513: etioplast1.74E-03
14GO:0031357: integral component of chloroplast inner membrane1.74E-03
15GO:0009536: plastid1.97E-03
16GO:0005886: plasma membrane2.35E-03
17GO:0009528: plastid inner membrane2.88E-03
18GO:0009509: chromoplast2.88E-03
19GO:0030139: endocytic vesicle2.88E-03
20GO:0005884: actin filament3.03E-03
21GO:0043231: intracellular membrane-bounded organelle3.21E-03
22GO:0010319: stromule3.51E-03
23GO:0032585: multivesicular body membrane4.20E-03
24GO:0032432: actin filament bundle4.20E-03
25GO:0005719: nuclear euchromatin4.20E-03
26GO:0009534: chloroplast thylakoid5.09E-03
27GO:0030663: COPI-coated vesicle membrane5.67E-03
28GO:0009527: plastid outer membrane5.67E-03
29GO:0009898: cytoplasmic side of plasma membrane5.67E-03
30GO:0009532: plastid stroma7.59E-03
31GO:0015629: actin cytoskeleton9.09E-03
32GO:0005871: kinesin complex1.08E-02
33GO:0009535: chloroplast thylakoid membrane1.12E-02
34GO:0031969: chloroplast membrane1.21E-02
35GO:0005856: cytoskeleton1.25E-02
36GO:0009986: cell surface1.30E-02
37GO:0048226: Casparian strip1.52E-02
38GO:0000783: nuclear telomere cap complex1.75E-02
39GO:0015030: Cajal body2.25E-02
40GO:0009706: chloroplast inner membrane2.47E-02
41GO:0030125: clathrin vesicle coat2.51E-02
42GO:0000418: DNA-directed RNA polymerase IV complex2.51E-02
43GO:0016459: myosin complex2.51E-02
44GO:0009707: chloroplast outer membrane2.96E-02
45GO:0009543: chloroplast thylakoid lumen3.28E-02
46GO:0005578: proteinaceous extracellular matrix3.36E-02
47GO:0005874: microtubule3.55E-02
48GO:0030095: chloroplast photosystem II3.66E-02
49GO:0005759: mitochondrial matrix4.35E-02
50GO:0009654: photosystem II oxygen evolving complex4.95E-02
51GO:0042651: thylakoid membrane4.95E-02
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Gene type



Gene DE type