co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G11655

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080149: sucrose induced translational repression	0.00E+00
2	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
3	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
4	GO:0002084: protein depalmitoylation	0.00E+00
5	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
6	GO:0006511: ubiquitin-dependent protein catabolic process	9.60E-05
7	GO:0030163: protein catabolic process	1.61E-04
8	GO:0042350: GDP-L-fucose biosynthetic process	1.73E-04
9	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.73E-04
10	GO:1900384: regulation of flavonol biosynthetic process	1.73E-04
11	GO:1903648: positive regulation of chlorophyll catabolic process	1.73E-04
12	GO:0035266: meristem growth	1.73E-04
13	GO:0000077: DNA damage checkpoint	1.73E-04
14	GO:0007292: female gamete generation	1.73E-04
15	GO:0016192: vesicle-mediated transport	2.27E-04
16	GO:0006499: N-terminal protein myristoylation	3.66E-04
17	GO:0042853: L-alanine catabolic process	3.92E-04
18	GO:0002215: defense response to nematode	3.92E-04
19	GO:0040020: regulation of meiotic nuclear division	3.92E-04
20	GO:0051788: response to misfolded protein	3.92E-04
21	GO:0009156: ribonucleoside monophosphate biosynthetic process	3.92E-04
22	GO:0006597: spermine biosynthetic process	3.92E-04
23	GO:0009805: coumarin biosynthetic process	3.92E-04
24	GO:0009225: nucleotide-sugar metabolic process	5.46E-04
25	GO:0060968: regulation of gene silencing	6.40E-04
26	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	6.40E-04
27	GO:0010253: UDP-rhamnose biosynthetic process	6.40E-04
28	GO:0006651: diacylglycerol biosynthetic process	6.40E-04
29	GO:0030433: ubiquitin-dependent ERAD pathway	8.83E-04
30	GO:0072334: UDP-galactose transmembrane transport	9.13E-04
31	GO:0009226: nucleotide-sugar biosynthetic process	9.13E-04
32	GO:1902584: positive regulation of response to water deprivation	1.21E-03
33	GO:0010363: regulation of plant-type hypersensitive response	1.21E-03
34	GO:0009165: nucleotide biosynthetic process	1.21E-03
35	GO:0033320: UDP-D-xylose biosynthetic process	1.21E-03
36	GO:0007275: multicellular organism development	1.22E-03
37	GO:0045927: positive regulation of growth	1.54E-03
38	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.54E-03
39	GO:0043248: proteasome assembly	1.89E-03
40	GO:0042732: D-xylose metabolic process	1.89E-03
41	GO:0042176: regulation of protein catabolic process	1.89E-03
42	GO:0010315: auxin efflux	1.89E-03
43	GO:0006596: polyamine biosynthetic process	1.89E-03
44	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.89E-03
45	GO:0048827: phyllome development	1.89E-03
46	GO:0048232: male gamete generation	1.89E-03
47	GO:0006555: methionine metabolic process	1.89E-03
48	GO:0019509: L-methionine salvage from methylthioadenosine	2.27E-03
49	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.27E-03
50	GO:0034389: lipid particle organization	2.27E-03
51	GO:0017148: negative regulation of translation	2.27E-03
52	GO:0006744: ubiquinone biosynthetic process	2.67E-03
53	GO:0080186: developmental vegetative growth	2.67E-03
54	GO:1900057: positive regulation of leaf senescence	2.67E-03
55	GO:0006401: RNA catabolic process	2.67E-03
56	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.09E-03
57	GO:0010078: maintenance of root meristem identity	3.09E-03
58	GO:0007155: cell adhesion	3.09E-03
59	GO:0015996: chlorophyll catabolic process	3.54E-03
60	GO:0030968: endoplasmic reticulum unfolded protein response	3.54E-03
61	GO:0006972: hyperosmotic response	3.54E-03
62	GO:0009699: phenylpropanoid biosynthetic process	3.54E-03
63	GO:0006002: fructose 6-phosphate metabolic process	3.54E-03
64	GO:0009651: response to salt stress	3.91E-03
65	GO:0034599: cellular response to oxidative stress	3.95E-03
66	GO:0010332: response to gamma radiation	4.00E-03
67	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.00E-03
68	GO:0015780: nucleotide-sugar transport	4.00E-03
69	GO:0009835: fruit ripening	4.00E-03
70	GO:0090332: stomatal closure	4.49E-03
71	GO:0051555: flavonol biosynthetic process	4.99E-03
72	GO:0000103: sulfate assimilation	4.99E-03
73	GO:0048829: root cap development	4.99E-03
74	GO:0006913: nucleocytoplasmic transport	5.52E-03
75	GO:0072593: reactive oxygen species metabolic process	5.52E-03
76	GO:0046856: phosphatidylinositol dephosphorylation	5.52E-03
77	GO:0010015: root morphogenesis	5.52E-03
78	GO:0000266: mitochondrial fission	6.06E-03
79	GO:0055046: microgametogenesis	6.61E-03
80	GO:0034605: cellular response to heat	7.20E-03
81	GO:0009933: meristem structural organization	7.20E-03
82	GO:0006457: protein folding	7.53E-03
83	GO:0009825: multidimensional cell growth	7.79E-03
84	GO:0090351: seedling development	7.79E-03
85	GO:0007033: vacuole organization	7.79E-03
86	GO:0010053: root epidermal cell differentiation	7.79E-03
87	GO:0006886: intracellular protein transport	8.12E-03
88	GO:0000162: tryptophan biosynthetic process	8.41E-03
89	GO:0034976: response to endoplasmic reticulum stress	8.41E-03
90	GO:0046686: response to cadmium ion	8.80E-03
91	GO:0030150: protein import into mitochondrial matrix	9.03E-03
92	GO:0009116: nucleoside metabolic process	9.03E-03
93	GO:0008299: isoprenoid biosynthetic process	9.69E-03
94	GO:0019915: lipid storage	1.03E-02
95	GO:0009814: defense response, incompatible interaction	1.10E-02
96	GO:0019748: secondary metabolic process	1.10E-02
97	GO:0009411: response to UV	1.17E-02
98	GO:0055114: oxidation-reduction process	1.19E-02
99	GO:0009058: biosynthetic process	1.23E-02
100	GO:0010584: pollen exine formation	1.24E-02
101	GO:0042127: regulation of cell proliferation	1.24E-02
102	GO:0006662: glycerol ether metabolic process	1.47E-02
103	GO:0048868: pollen tube development	1.47E-02
104	GO:0006623: protein targeting to vacuole	1.62E-02
105	GO:0000302: response to reactive oxygen species	1.70E-02
106	GO:0016032: viral process	1.78E-02
107	GO:0015031: protein transport	2.12E-02
108	GO:0001666: response to hypoxia	2.21E-02
109	GO:0006906: vesicle fusion	2.39E-02
110	GO:0009817: defense response to fungus, incompatible interaction	2.67E-02
111	GO:0010311: lateral root formation	2.77E-02
112	GO:0048767: root hair elongation	2.77E-02
113	GO:0006811: ion transport	2.87E-02
114	GO:0045087: innate immune response	3.16E-02
115	GO:0006631: fatty acid metabolic process	3.58E-02
116	GO:0006887: exocytosis	3.58E-02
117	GO:0045454: cell redox homeostasis	3.72E-02
118	GO:0010114: response to red light	3.79E-02
119	GO:0009744: response to sucrose	3.79E-02
120	GO:0051707: response to other organism	3.79E-02
121	GO:0000209: protein polyubiquitination	3.90E-02
122	GO:0008643: carbohydrate transport	4.01E-02
123	GO:0009965: leaf morphogenesis	4.12E-02
124	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.34E-02
125	GO:0009408: response to heat	4.57E-02
126	GO:0006486: protein glycosylation	4.68E-02
127	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02
128	GO:0010224: response to UV-B	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
3	GO:0061133: endopeptidase activator activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0070628: proteasome binding	2.30E-05
6	GO:0008320: protein transmembrane transporter activity	1.03E-04
7	GO:1990381: ubiquitin-specific protease binding	1.73E-04
8	GO:0102293: pheophytinase b activity	1.73E-04
9	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	1.73E-04
10	GO:0016768: spermine synthase activity	1.73E-04
11	GO:0050577: GDP-L-fucose synthase activity	1.73E-04
12	GO:0051082: unfolded protein binding	1.80E-04
13	GO:0030234: enzyme regulator activity	2.85E-04
14	GO:0050347: trans-octaprenyltranstransferase activity	3.92E-04
15	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	3.92E-04
16	GO:0000774: adenyl-nucleotide exchange factor activity	3.92E-04
17	GO:0008805: carbon-monoxide oxygenase activity	3.92E-04
18	GO:0050377: UDP-glucose 4,6-dehydratase activity	3.92E-04
19	GO:0048531: beta-1,3-galactosyltransferase activity	3.92E-04
20	GO:0047746: chlorophyllase activity	3.92E-04
21	GO:0010297: heteropolysaccharide binding	3.92E-04
22	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.92E-04
23	GO:0004766: spermidine synthase activity	3.92E-04
24	GO:0010280: UDP-L-rhamnose synthase activity	3.92E-04
25	GO:0003746: translation elongation factor activity	4.38E-04
26	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.40E-04
27	GO:0000975: regulatory region DNA binding	6.40E-04
28	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.13E-04
29	GO:0004749: ribose phosphate diphosphokinase activity	9.13E-04
30	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.21E-03
31	GO:0004659: prenyltransferase activity	1.21E-03
32	GO:0004834: tryptophan synthase activity	1.21E-03
33	GO:0016853: isomerase activity	1.40E-03
34	GO:0005459: UDP-galactose transmembrane transporter activity	1.54E-03
35	GO:0004130: cytochrome-c peroxidase activity	1.89E-03
36	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.89E-03
37	GO:0016688: L-ascorbate peroxidase activity	1.89E-03
38	GO:0036402: proteasome-activating ATPase activity	1.89E-03
39	GO:0048040: UDP-glucuronate decarboxylase activity	1.89E-03
40	GO:0008474: palmitoyl-(protein) hydrolase activity	1.89E-03
41	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.27E-03
42	GO:0004656: procollagen-proline 4-dioxygenase activity	2.27E-03
43	GO:0070403: NAD+ binding	2.27E-03
44	GO:0008195: phosphatidate phosphatase activity	2.27E-03
45	GO:0003872: 6-phosphofructokinase activity	2.67E-03
46	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.67E-03
47	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.09E-03
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.78E-03
49	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.00E-03
50	GO:0016887: ATPase activity	4.15E-03
51	GO:0005198: structural molecule activity	5.46E-03
52	GO:0004161: dimethylallyltranstransferase activity	5.52E-03
53	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	6.06E-03
54	GO:0008378: galactosyltransferase activity	6.06E-03
55	GO:0031072: heat shock protein binding	6.61E-03
56	GO:0004175: endopeptidase activity	7.20E-03
57	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.20E-03
58	GO:0017025: TBP-class protein binding	7.79E-03
59	GO:0004867: serine-type endopeptidase inhibitor activity	7.79E-03
60	GO:0004725: protein tyrosine phosphatase activity	8.41E-03
61	GO:0022857: transmembrane transporter activity	8.78E-03
62	GO:0043130: ubiquitin binding	9.03E-03
63	GO:0051536: iron-sulfur cluster binding	9.03E-03
64	GO:0031418: L-ascorbic acid binding	9.03E-03
65	GO:0051087: chaperone binding	9.69E-03
66	GO:0004298: threonine-type endopeptidase activity	1.03E-02
67	GO:0008408: 3'-5' exonuclease activity	1.03E-02
68	GO:0005525: GTP binding	1.08E-02
69	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.20E-02
70	GO:0003756: protein disulfide isomerase activity	1.24E-02
71	GO:0030170: pyridoxal phosphate binding	1.30E-02
72	GO:0005102: receptor binding	1.32E-02
73	GO:0047134: protein-disulfide reductase activity	1.32E-02
74	GO:0004527: exonuclease activity	1.47E-02
75	GO:0050662: coenzyme binding	1.54E-02
76	GO:0004791: thioredoxin-disulfide reductase activity	1.54E-02
77	GO:0004518: nuclease activity	1.78E-02
78	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.87E-02
79	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.04E-02
80	GO:0008237: metallopeptidase activity	2.04E-02
81	GO:0051213: dioxygenase activity	2.21E-02
82	GO:0016491: oxidoreductase activity	2.23E-02
83	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.67E-02
84	GO:0005096: GTPase activator activity	2.77E-02
85	GO:0050897: cobalt ion binding	2.96E-02
86	GO:0030246: carbohydrate binding	3.05E-02
87	GO:0000149: SNARE binding	3.37E-02
88	GO:0005484: SNAP receptor activity	3.79E-02
89	GO:0042803: protein homodimerization activity	3.89E-02
90	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
91	GO:0003924: GTPase activity	4.57E-02
92	GO:0009055: electron carrier activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	7.55E-09
2	GO:0008541: proteasome regulatory particle, lid subcomplex	1.24E-07
3	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.03E-04
4	GO:0000836: Hrd1p ubiquitin ligase complex	1.73E-04
5	GO:0044322: endoplasmic reticulum quality control compartment	1.73E-04
6	GO:0001405: presequence translocase-associated import motor	1.73E-04
7	GO:0032580: Golgi cisterna membrane	1.75E-04
8	GO:0005789: endoplasmic reticulum membrane	1.78E-04
9	GO:0008540: proteasome regulatory particle, base subcomplex	2.41E-04
10	GO:0005788: endoplasmic reticulum lumen	2.43E-04
11	GO:0005783: endoplasmic reticulum	3.44E-04
12	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.40E-04
13	GO:0030132: clathrin coat of coated pit	6.40E-04
14	GO:0005839: proteasome core complex	8.10E-04
15	GO:0036513: Derlin-1 retrotranslocation complex	9.13E-04
16	GO:0005945: 6-phosphofructokinase complex	1.54E-03
17	GO:0031597: cytosolic proteasome complex	2.27E-03
18	GO:0031595: nuclear proteasome complex	2.67E-03
19	GO:0005615: extracellular space	3.13E-03
20	GO:0005811: lipid particle	3.54E-03
21	GO:0031901: early endosome membrane	4.00E-03
22	GO:0005774: vacuolar membrane	4.19E-03
23	GO:0005794: Golgi apparatus	5.57E-03
24	GO:0009524: phragmoplast	1.23E-02
25	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.24E-02
26	GO:0031965: nuclear membrane	1.62E-02
27	GO:0005737: cytoplasm	1.66E-02
28	GO:0016592: mediator complex	1.78E-02
29	GO:0005829: cytosol	2.14E-02
30	GO:0005773: vacuole	2.76E-02
31	GO:0005819: spindle	3.37E-02
32	GO:0031902: late endosome membrane	3.58E-02
33	GO:0031201: SNARE complex	3.58E-02
34	GO:0005886: plasma membrane	3.77E-02
35	GO:0016021: integral component of membrane	4.00E-02
36	GO:0005635: nuclear envelope	4.91E-02