Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G10960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015690: aluminum cation transport0.00E+00
2GO:0009312: oligosaccharide biosynthetic process0.00E+00
3GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
4GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
5GO:1902009: positive regulation of toxin transport0.00E+00
6GO:0046865: terpenoid transport0.00E+00
7GO:0018063: cytochrome c-heme linkage0.00E+00
8GO:0051553: flavone biosynthetic process0.00E+00
9GO:0010324: membrane invagination0.00E+00
10GO:0010055: atrichoblast differentiation0.00E+00
11GO:1902001: fatty acid transmembrane transport0.00E+00
12GO:1902289: negative regulation of defense response to oomycetes0.00E+00
13GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
14GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
15GO:0010112: regulation of systemic acquired resistance1.17E-06
16GO:0051707: response to other organism9.30E-06
17GO:0009636: response to toxic substance1.30E-05
18GO:0009751: response to salicylic acid1.81E-05
19GO:0042742: defense response to bacterium2.02E-05
20GO:0071456: cellular response to hypoxia3.33E-05
21GO:0009617: response to bacterium5.23E-05
22GO:0001676: long-chain fatty acid metabolic process7.70E-05
23GO:0006952: defense response1.07E-04
24GO:0010150: leaf senescence2.09E-04
25GO:0009643: photosynthetic acclimation2.90E-04
26GO:0009759: indole glucosinolate biosynthetic process2.90E-04
27GO:0006979: response to oxidative stress3.29E-04
28GO:0010482: regulation of epidermal cell division4.90E-04
29GO:0033306: phytol metabolic process4.90E-04
30GO:0009700: indole phytoalexin biosynthetic process4.90E-04
31GO:0050691: regulation of defense response to virus by host4.90E-04
32GO:0010230: alternative respiration4.90E-04
33GO:0034214: protein hexamerization4.90E-04
34GO:1900384: regulation of flavonol biosynthetic process4.90E-04
35GO:1990542: mitochondrial transmembrane transport4.90E-04
36GO:0032107: regulation of response to nutrient levels4.90E-04
37GO:1902600: hydrogen ion transmembrane transport4.90E-04
38GO:0048508: embryonic meristem development4.90E-04
39GO:0015760: glucose-6-phosphate transport4.90E-04
40GO:1900057: positive regulation of leaf senescence4.99E-04
41GO:0042391: regulation of membrane potential6.79E-04
42GO:0010120: camalexin biosynthetic process7.58E-04
43GO:0010200: response to chitin8.77E-04
44GO:0009835: fruit ripening9.06E-04
45GO:0010193: response to ozone9.76E-04
46GO:0000719: photoreactive repair1.05E-03
47GO:0015908: fatty acid transport1.05E-03
48GO:0044419: interspecies interaction between organisms1.05E-03
49GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.05E-03
50GO:0009945: radial axis specification1.05E-03
51GO:0019725: cellular homeostasis1.05E-03
52GO:0015712: hexose phosphate transport1.05E-03
53GO:0051258: protein polymerization1.05E-03
54GO:0071668: plant-type cell wall assembly1.05E-03
55GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.05E-03
56GO:0009838: abscission1.05E-03
57GO:0080181: lateral root branching1.05E-03
58GO:0055088: lipid homeostasis1.05E-03
59GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.07E-03
60GO:0050832: defense response to fungus1.14E-03
61GO:0009684: indoleacetic acid biosynthetic process1.43E-03
62GO:0051607: defense response to virus1.44E-03
63GO:0009620: response to fungus1.68E-03
64GO:1900055: regulation of leaf senescence1.72E-03
65GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.72E-03
66GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process1.72E-03
67GO:0006954: inflammatory response1.72E-03
68GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.72E-03
69GO:0035436: triose phosphate transmembrane transport1.72E-03
70GO:0080163: regulation of protein serine/threonine phosphatase activity1.72E-03
71GO:0071398: cellular response to fatty acid1.72E-03
72GO:0010186: positive regulation of cellular defense response1.72E-03
73GO:0015692: lead ion transport1.72E-03
74GO:0015695: organic cation transport1.72E-03
75GO:0015714: phosphoenolpyruvate transport1.72E-03
76GO:0080168: abscisic acid transport1.72E-03
77GO:0002237: response to molecule of bacterial origin2.11E-03
78GO:0009407: toxin catabolic process2.47E-03
79GO:0015696: ammonium transport2.50E-03
80GO:0051289: protein homotetramerization2.50E-03
81GO:0080024: indolebutyric acid metabolic process2.50E-03
82GO:0010116: positive regulation of abscisic acid biosynthetic process2.50E-03
83GO:0006020: inositol metabolic process2.50E-03
84GO:0070301: cellular response to hydrogen peroxide2.50E-03
85GO:0002239: response to oomycetes2.50E-03
86GO:0000162: tryptophan biosynthetic process2.64E-03
87GO:0080147: root hair cell development2.93E-03
88GO:2000377: regulation of reactive oxygen species metabolic process2.93E-03
89GO:0051567: histone H3-K9 methylation3.36E-03
90GO:0015713: phosphoglycerate transport3.36E-03
91GO:0015867: ATP transport3.36E-03
92GO:1901141: regulation of lignin biosynthetic process3.36E-03
93GO:0010109: regulation of photosynthesis3.36E-03
94GO:0060548: negative regulation of cell death3.36E-03
95GO:0048830: adventitious root development3.36E-03
96GO:1901002: positive regulation of response to salt stress3.36E-03
97GO:0072488: ammonium transmembrane transport3.36E-03
98GO:0009693: ethylene biosynthetic process4.25E-03
99GO:0009625: response to insect4.25E-03
100GO:0034052: positive regulation of plant-type hypersensitive response4.31E-03
101GO:0046283: anthocyanin-containing compound metabolic process4.31E-03
102GO:0009229: thiamine diphosphate biosynthetic process4.31E-03
103GO:0016094: polyprenol biosynthetic process4.31E-03
104GO:0006855: drug transmembrane transport4.98E-03
105GO:1900425: negative regulation of defense response to bacterium5.34E-03
106GO:0033365: protein localization to organelle5.34E-03
107GO:0006574: valine catabolic process5.34E-03
108GO:0009228: thiamine biosynthetic process5.34E-03
109GO:0015866: ADP transport5.34E-03
110GO:0010256: endomembrane system organization5.34E-03
111GO:0007166: cell surface receptor signaling pathway5.47E-03
112GO:0042372: phylloquinone biosynthetic process6.44E-03
113GO:0045926: negative regulation of growth6.44E-03
114GO:0009942: longitudinal axis specification6.44E-03
115GO:0006623: protein targeting to vacuole6.74E-03
116GO:0009737: response to abscisic acid6.80E-03
117GO:0002229: defense response to oomycetes7.22E-03
118GO:0006635: fatty acid beta-oxidation7.22E-03
119GO:0000122: negative regulation of transcription from RNA polymerase II promoter7.62E-03
120GO:0050829: defense response to Gram-negative bacterium7.62E-03
121GO:1902074: response to salt7.62E-03
122GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.62E-03
123GO:0043090: amino acid import7.62E-03
124GO:1900056: negative regulation of leaf senescence7.62E-03
125GO:0030091: protein repair8.87E-03
126GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline8.87E-03
127GO:0009819: drought recovery8.87E-03
128GO:0009850: auxin metabolic process8.87E-03
129GO:0043068: positive regulation of programmed cell death8.87E-03
130GO:0006605: protein targeting8.87E-03
131GO:0031540: regulation of anthocyanin biosynthetic process8.87E-03
132GO:0006997: nucleus organization1.02E-02
133GO:0010204: defense response signaling pathway, resistance gene-independent1.02E-02
134GO:0017004: cytochrome complex assembly1.02E-02
135GO:0010208: pollen wall assembly1.02E-02
136GO:0010029: regulation of seed germination1.11E-02
137GO:0006098: pentose-phosphate shunt1.16E-02
138GO:0019432: triglyceride biosynthetic process1.16E-02
139GO:0007338: single fertilization1.16E-02
140GO:0009627: systemic acquired resistance1.17E-02
141GO:0080167: response to karrikin1.20E-02
142GO:0008202: steroid metabolic process1.30E-02
143GO:0090332: stomatal closure1.30E-02
144GO:0015031: protein transport1.33E-02
145GO:0009813: flavonoid biosynthetic process1.44E-02
146GO:0009870: defense response signaling pathway, resistance gene-dependent1.45E-02
147GO:0019538: protein metabolic process1.45E-02
148GO:0006032: chitin catabolic process1.45E-02
149GO:0009641: shade avoidance1.45E-02
150GO:0051555: flavonol biosynthetic process1.45E-02
151GO:0019684: photosynthesis, light reaction1.61E-02
152GO:0009089: lysine biosynthetic process via diaminopimelate1.61E-02
153GO:0009682: induced systemic resistance1.61E-02
154GO:0052544: defense response by callose deposition in cell wall1.61E-02
155GO:0048765: root hair cell differentiation1.61E-02
156GO:0002213: defense response to insect1.78E-02
157GO:0000266: mitochondrial fission1.78E-02
158GO:0009611: response to wounding1.78E-02
159GO:0040008: regulation of growth1.78E-02
160GO:0012501: programmed cell death1.78E-02
161GO:2000012: regulation of auxin polar transport1.94E-02
162GO:0006829: zinc II ion transport1.94E-02
163GO:0006631: fatty acid metabolic process2.08E-02
164GO:0046688: response to copper ion2.30E-02
165GO:0090351: seedling development2.30E-02
166GO:0009225: nucleotide-sugar metabolic process2.30E-02
167GO:0042343: indole glucosinolate metabolic process2.30E-02
168GO:0009753: response to jasmonic acid2.40E-02
169GO:0008152: metabolic process2.50E-02
170GO:0055114: oxidation-reduction process2.64E-02
171GO:0030150: protein import into mitochondrial matrix2.67E-02
172GO:0031347: regulation of defense response2.73E-02
173GO:0006812: cation transport2.83E-02
174GO:0010026: trichome differentiation2.87E-02
175GO:0009695: jasmonic acid biosynthetic process2.87E-02
176GO:0006825: copper ion transport2.87E-02
177GO:0051302: regulation of cell division2.87E-02
178GO:0006813: potassium ion transport3.04E-02
179GO:0016998: cell wall macromolecule catabolic process3.07E-02
180GO:0098542: defense response to other organism3.07E-02
181GO:0009269: response to desiccation3.07E-02
182GO:0016226: iron-sulfur cluster assembly3.27E-02
183GO:0031348: negative regulation of defense response3.27E-02
184GO:0009411: response to UV3.48E-02
185GO:0006012: galactose metabolic process3.48E-02
186GO:0007165: signal transduction3.68E-02
187GO:0009626: plant-type hypersensitive response3.82E-02
188GO:0009723: response to ethylene3.91E-02
189GO:0070417: cellular response to cold3.91E-02
190GO:0006468: protein phosphorylation3.96E-02
191GO:0000271: polysaccharide biosynthetic process4.14E-02
192GO:0000413: protein peptidyl-prolyl isomerization4.14E-02
193GO:0009624: response to nematode4.31E-02
194GO:0006520: cellular amino acid metabolic process4.36E-02
195GO:0045489: pectin biosynthetic process4.36E-02
196GO:0048868: pollen tube development4.36E-02
197GO:0006814: sodium ion transport4.59E-02
198GO:0009646: response to absence of light4.59E-02
199GO:0009749: response to glucose4.83E-02
RankGO TermAdjusted P value
1GO:0004610: phosphoacetylglucosamine mutase activity0.00E+00
2GO:0050334: thiaminase activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0005212: structural constituent of eye lens0.00E+00
5GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
6GO:0033759: flavone synthase activity0.00E+00
7GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
8GO:0030552: cAMP binding2.25E-04
9GO:0030553: cGMP binding2.25E-04
10GO:0030247: polysaccharide binding2.80E-04
11GO:0005216: ion channel activity3.47E-04
12GO:0102391: decanoate--CoA ligase activity3.89E-04
13GO:0070401: NADP+ binding4.90E-04
14GO:0019707: protein-cysteine S-acyltransferase activity4.90E-04
15GO:0047940: glucuronokinase activity4.90E-04
16GO:2001147: camalexin binding4.90E-04
17GO:0015245: fatty acid transporter activity4.90E-04
18GO:0010285: L,L-diaminopimelate aminotransferase activity4.90E-04
19GO:0016920: pyroglutamyl-peptidase activity4.90E-04
20GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.90E-04
21GO:0090353: polygalacturonase inhibitor activity4.90E-04
22GO:0016229: steroid dehydrogenase activity4.90E-04
23GO:2001227: quercitrin binding4.90E-04
24GO:0004467: long-chain fatty acid-CoA ligase activity4.99E-04
25GO:0004033: aldo-keto reductase (NADP) activity6.22E-04
26GO:0047893: flavonol 3-O-glucosyltransferase activity6.22E-04
27GO:0030551: cyclic nucleotide binding6.79E-04
28GO:0005249: voltage-gated potassium channel activity6.79E-04
29GO:0015297: antiporter activity9.32E-04
30GO:0032934: sterol binding1.05E-03
31GO:0015036: disulfide oxidoreductase activity1.05E-03
32GO:0050736: O-malonyltransferase activity1.05E-03
33GO:0047364: desulfoglucosinolate sulfotransferase activity1.05E-03
34GO:0015152: glucose-6-phosphate transmembrane transporter activity1.05E-03
35GO:0043169: cation binding1.72E-03
36GO:0032403: protein complex binding1.72E-03
37GO:0071917: triose-phosphate transmembrane transporter activity1.72E-03
38GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.72E-03
39GO:0004324: ferredoxin-NADP+ reductase activity1.72E-03
40GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.72E-03
41GO:0016531: copper chaperone activity1.72E-03
42GO:0004806: triglyceride lipase activity1.91E-03
43GO:0005509: calcium ion binding2.33E-03
44GO:0022890: inorganic cation transmembrane transporter activity2.50E-03
45GO:0010178: IAA-amino acid conjugate hydrolase activity2.50E-03
46GO:0005432: calcium:sodium antiporter activity2.50E-03
47GO:0008106: alcohol dehydrogenase (NADP+) activity2.50E-03
48GO:0017077: oxidative phosphorylation uncoupler activity2.50E-03
49GO:0035529: NADH pyrophosphatase activity2.50E-03
50GO:0016758: transferase activity, transferring hexosyl groups2.61E-03
51GO:0001046: core promoter sequence-specific DNA binding2.93E-03
52GO:0003995: acyl-CoA dehydrogenase activity3.36E-03
53GO:0050378: UDP-glucuronate 4-epimerase activity3.36E-03
54GO:0009916: alternative oxidase activity3.36E-03
55GO:0015120: phosphoglycerate transmembrane transporter activity3.36E-03
56GO:0004834: tryptophan synthase activity3.36E-03
57GO:0004737: pyruvate decarboxylase activity3.36E-03
58GO:0035251: UDP-glucosyltransferase activity3.55E-03
59GO:0004364: glutathione transferase activity3.88E-03
60GO:0002094: polyprenyltransferase activity4.31E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor4.31E-03
62GO:0003997: acyl-CoA oxidase activity4.31E-03
63GO:0005496: steroid binding4.31E-03
64GO:0047631: ADP-ribose diphosphatase activity4.31E-03
65GO:0008194: UDP-glycosyltransferase activity5.29E-03
66GO:0000210: NAD+ diphosphatase activity5.34E-03
67GO:0008519: ammonium transmembrane transporter activity5.34E-03
68GO:0030976: thiamine pyrophosphate binding5.34E-03
69GO:0050662: coenzyme binding6.28E-03
70GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.44E-03
71GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.44E-03
72GO:0004144: diacylglycerol O-acyltransferase activity6.44E-03
73GO:0005347: ATP transmembrane transporter activity6.44E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity6.44E-03
75GO:0008113: peptide-methionine (S)-S-oxide reductase activity6.44E-03
76GO:0015217: ADP transmembrane transporter activity6.44E-03
77GO:0043295: glutathione binding7.62E-03
78GO:0016831: carboxy-lyase activity7.62E-03
79GO:0102425: myricetin 3-O-glucosyltransferase activity7.62E-03
80GO:0102360: daphnetin 3-O-glucosyltransferase activity7.62E-03
81GO:0080043: quercetin 3-O-glucosyltransferase activity8.38E-03
82GO:0080044: quercetin 7-O-glucosyltransferase activity8.38E-03
83GO:0052747: sinapyl alcohol dehydrogenase activity8.87E-03
84GO:0005544: calcium-dependent phospholipid binding8.87E-03
85GO:0015491: cation:cation antiporter activity8.87E-03
86GO:0004714: transmembrane receptor protein tyrosine kinase activity8.87E-03
87GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity8.87E-03
88GO:0004034: aldose 1-epimerase activity8.87E-03
89GO:0008483: transaminase activity9.32E-03
90GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity9.32E-03
91GO:0008142: oxysterol binding1.02E-02
92GO:0071949: FAD binding1.16E-02
93GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.16E-02
94GO:0008375: acetylglucosaminyltransferase activity1.17E-02
95GO:0047617: acyl-CoA hydrolase activity1.30E-02
96GO:0043565: sequence-specific DNA binding1.31E-02
97GO:0030170: pyridoxal phosphate binding1.43E-02
98GO:0015238: drug transmembrane transporter activity1.44E-02
99GO:0004864: protein phosphatase inhibitor activity1.45E-02
100GO:0004568: chitinase activity1.45E-02
101GO:0015386: potassium:proton antiporter activity1.61E-02
102GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.74E-02
103GO:0016301: kinase activity1.74E-02
104GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.77E-02
105GO:0045551: cinnamyl-alcohol dehydrogenase activity1.78E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity1.94E-02
107GO:0005315: inorganic phosphate transmembrane transporter activity1.94E-02
108GO:0008266: poly(U) RNA binding2.12E-02
109GO:0016757: transferase activity, transferring glycosyl groups2.15E-02
110GO:0003712: transcription cofactor activity2.30E-02
111GO:0008146: sulfotransferase activity2.30E-02
112GO:0004674: protein serine/threonine kinase activity2.50E-02
113GO:0005198: structural molecule activity2.53E-02
114GO:0051536: iron-sulfur cluster binding2.67E-02
115GO:0031418: L-ascorbic acid binding2.67E-02
116GO:0051287: NAD binding2.73E-02
117GO:0015079: potassium ion transmembrane transporter activity2.87E-02
118GO:0008324: cation transmembrane transporter activity2.87E-02
119GO:0019706: protein-cysteine S-palmitoyltransferase activity3.07E-02
120GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.27E-02
121GO:0005516: calmodulin binding3.41E-02
122GO:0008810: cellulase activity3.48E-02
123GO:0004499: N,N-dimethylaniline monooxygenase activity3.70E-02
124GO:0016787: hydrolase activity3.89E-02
125GO:0004497: monooxygenase activity4.26E-02
126GO:0046873: metal ion transmembrane transporter activity4.36E-02
127GO:0016746: transferase activity, transferring acyl groups4.44E-02
128GO:0015299: solute:proton antiporter activity4.59E-02
129GO:0016853: isomerase activity4.59E-02
130GO:0046872: metal ion binding4.92E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane1.35E-08
2GO:0005794: Golgi apparatus3.77E-06
3GO:0005886: plasma membrane9.57E-05
4GO:0005802: trans-Golgi network1.53E-04
5GO:0000813: ESCRT I complex2.05E-04
6GO:0045252: oxoglutarate dehydrogenase complex4.90E-04
7GO:0000138: Golgi trans cisterna4.90E-04
8GO:0005768: endosome7.44E-04
9GO:0005901: caveola1.05E-03
10GO:0031314: extrinsic component of mitochondrial inner membrane1.05E-03
11GO:0005743: mitochondrial inner membrane1.53E-03
12GO:0042406: extrinsic component of endoplasmic reticulum membrane1.72E-03
13GO:0005777: peroxisome2.33E-03
14GO:0030658: transport vesicle membrane2.50E-03
15GO:0009506: plasmodesma3.86E-03
16GO:0000164: protein phosphatase type 1 complex4.31E-03
17GO:0031965: nuclear membrane6.74E-03
18GO:0046658: anchored component of plasma membrane6.84E-03
19GO:0005779: integral component of peroxisomal membrane1.02E-02
20GO:0005887: integral component of plasma membrane1.08E-02
21GO:0017119: Golgi transport complex1.45E-02
22GO:0005829: cytosol1.75E-02
23GO:0005789: endoplasmic reticulum membrane1.96E-02
24GO:0005795: Golgi stack2.30E-02
25GO:0005769: early endosome2.48E-02
26GO:0005758: mitochondrial intermembrane space2.67E-02
27GO:0070469: respiratory chain2.87E-02
28GO:0005741: mitochondrial outer membrane3.07E-02
29GO:0031225: anchored component of membrane3.62E-02
30GO:0005744: mitochondrial inner membrane presequence translocase complex3.70E-02
31GO:0016020: membrane4.75E-02
32GO:0009504: cell plate4.83E-02
33GO:0019898: extrinsic component of membrane4.83E-02
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Gene type



Gene DE type