GO Enrichment Analysis of Co-expressed Genes with
AT4G09900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009661: chromoplast organization | 0.00E+00 |
| 2 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 1.67E-08 |
| 6 | GO:0090391: granum assembly | 1.70E-06 |
| 7 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.05E-06 |
| 8 | GO:0010207: photosystem II assembly | 4.38E-06 |
| 9 | GO:0010190: cytochrome b6f complex assembly | 1.95E-05 |
| 10 | GO:0042549: photosystem II stabilization | 1.95E-05 |
| 11 | GO:0006098: pentose-phosphate shunt | 7.78E-05 |
| 12 | GO:0015671: oxygen transport | 9.14E-05 |
| 13 | GO:0019544: arginine catabolic process to glutamate | 9.14E-05 |
| 14 | GO:0080093: regulation of photorespiration | 9.14E-05 |
| 15 | GO:0031998: regulation of fatty acid beta-oxidation | 9.14E-05 |
| 16 | GO:0043085: positive regulation of catalytic activity | 1.33E-04 |
| 17 | GO:0006094: gluconeogenesis | 1.77E-04 |
| 18 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.16E-04 |
| 19 | GO:0015979: photosynthesis | 3.79E-04 |
| 20 | GO:0006020: inositol metabolic process | 5.20E-04 |
| 21 | GO:0006662: glycerol ether metabolic process | 5.66E-04 |
| 22 | GO:0006021: inositol biosynthetic process | 6.90E-04 |
| 23 | GO:0045727: positive regulation of translation | 6.90E-04 |
| 24 | GO:0015994: chlorophyll metabolic process | 6.90E-04 |
| 25 | GO:0006097: glyoxylate cycle | 8.73E-04 |
| 26 | GO:0006465: signal peptide processing | 8.73E-04 |
| 27 | GO:0016120: carotene biosynthetic process | 8.73E-04 |
| 28 | GO:1902456: regulation of stomatal opening | 1.07E-03 |
| 29 | GO:0046855: inositol phosphate dephosphorylation | 1.07E-03 |
| 30 | GO:1900057: positive regulation of leaf senescence | 1.49E-03 |
| 31 | GO:0010196: nonphotochemical quenching | 1.49E-03 |
| 32 | GO:0034599: cellular response to oxidative stress | 1.67E-03 |
| 33 | GO:0006810: transport | 1.68E-03 |
| 34 | GO:0050821: protein stabilization | 1.72E-03 |
| 35 | GO:0009642: response to light intensity | 1.72E-03 |
| 36 | GO:0032544: plastid translation | 1.96E-03 |
| 37 | GO:0019432: triglyceride biosynthetic process | 2.21E-03 |
| 38 | GO:0005982: starch metabolic process | 2.48E-03 |
| 39 | GO:0006364: rRNA processing | 2.75E-03 |
| 40 | GO:0000272: polysaccharide catabolic process | 3.03E-03 |
| 41 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.03E-03 |
| 42 | GO:0032259: methylation | 3.15E-03 |
| 43 | GO:0006096: glycolytic process | 3.24E-03 |
| 44 | GO:0006790: sulfur compound metabolic process | 3.32E-03 |
| 45 | GO:0006108: malate metabolic process | 3.63E-03 |
| 46 | GO:0009725: response to hormone | 3.63E-03 |
| 47 | GO:0009767: photosynthetic electron transport chain | 3.63E-03 |
| 48 | GO:0010143: cutin biosynthetic process | 3.93E-03 |
| 49 | GO:0046854: phosphatidylinositol phosphorylation | 4.26E-03 |
| 50 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.58E-03 |
| 51 | GO:0055114: oxidation-reduction process | 4.71E-03 |
| 52 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.27E-03 |
| 53 | GO:0030433: ubiquitin-dependent ERAD pathway | 5.98E-03 |
| 54 | GO:0009735: response to cytokinin | 6.15E-03 |
| 55 | GO:0000413: protein peptidyl-prolyl isomerization | 7.51E-03 |
| 56 | GO:0042631: cellular response to water deprivation | 7.51E-03 |
| 57 | GO:0019252: starch biosynthetic process | 8.74E-03 |
| 58 | GO:0009658: chloroplast organization | 1.04E-02 |
| 59 | GO:0010027: thylakoid membrane organization | 1.19E-02 |
| 60 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.23E-02 |
| 61 | GO:0042128: nitrate assimilation | 1.28E-02 |
| 62 | GO:0080167: response to karrikin | 1.29E-02 |
| 63 | GO:0018298: protein-chromophore linkage | 1.43E-02 |
| 64 | GO:0009817: defense response to fungus, incompatible interaction | 1.43E-02 |
| 65 | GO:0010218: response to far red light | 1.54E-02 |
| 66 | GO:0045454: cell redox homeostasis | 1.54E-02 |
| 67 | GO:0009637: response to blue light | 1.69E-02 |
| 68 | GO:0009853: photorespiration | 1.69E-02 |
| 69 | GO:0042742: defense response to bacterium | 1.69E-02 |
| 70 | GO:0006099: tricarboxylic acid cycle | 1.75E-02 |
| 71 | GO:0006631: fatty acid metabolic process | 1.91E-02 |
| 72 | GO:0010114: response to red light | 2.03E-02 |
| 73 | GO:0009744: response to sucrose | 2.03E-02 |
| 74 | GO:0000209: protein polyubiquitination | 2.09E-02 |
| 75 | GO:0046686: response to cadmium ion | 2.94E-02 |
| 76 | GO:0009611: response to wounding | 3.46E-02 |
| 77 | GO:0006457: protein folding | 4.36E-02 |
| 78 | GO:0006633: fatty acid biosynthetic process | 4.45E-02 |
| 79 | GO:0007623: circadian rhythm | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 2 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 3 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.70E-06 |
| 5 | GO:0004332: fructose-bisphosphate aldolase activity | 1.95E-05 |
| 6 | GO:0009374: biotin binding | 9.14E-05 |
| 7 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 9.14E-05 |
| 8 | GO:0005344: oxygen transporter activity | 9.14E-05 |
| 9 | GO:0035671: enone reductase activity | 9.14E-05 |
| 10 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 9.14E-05 |
| 11 | GO:0008047: enzyme activator activity | 1.13E-04 |
| 12 | GO:0047746: chlorophyllase activity | 2.16E-04 |
| 13 | GO:0010297: heteropolysaccharide binding | 2.16E-04 |
| 14 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.16E-04 |
| 15 | GO:0033201: alpha-1,4-glucan synthase activity | 2.16E-04 |
| 16 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.16E-04 |
| 17 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.16E-04 |
| 18 | GO:0004324: ferredoxin-NADP+ reductase activity | 3.61E-04 |
| 19 | GO:0004373: glycogen (starch) synthase activity | 3.61E-04 |
| 20 | GO:0050734: hydroxycinnamoyltransferase activity | 3.61E-04 |
| 21 | GO:0047134: protein-disulfide reductase activity | 4.87E-04 |
| 22 | GO:0019843: rRNA binding | 6.07E-04 |
| 23 | GO:0004791: thioredoxin-disulfide reductase activity | 6.07E-04 |
| 24 | GO:0009011: starch synthase activity | 6.90E-04 |
| 25 | GO:0008453: alanine-glyoxylate transaminase activity | 6.90E-04 |
| 26 | GO:0048038: quinone binding | 6.93E-04 |
| 27 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.86E-04 |
| 28 | GO:0003959: NADPH dehydrogenase activity | 8.73E-04 |
| 29 | GO:0003989: acetyl-CoA carboxylase activity | 8.73E-04 |
| 30 | GO:0016615: malate dehydrogenase activity | 1.07E-03 |
| 31 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.27E-03 |
| 32 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.27E-03 |
| 33 | GO:0030060: L-malate dehydrogenase activity | 1.27E-03 |
| 34 | GO:0008168: methyltransferase activity | 1.48E-03 |
| 35 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.21E-03 |
| 36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.38E-03 |
| 37 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 2.48E-03 |
| 38 | GO:0031072: heat shock protein binding | 3.63E-03 |
| 39 | GO:0008266: poly(U) RNA binding | 3.93E-03 |
| 40 | GO:0015035: protein disulfide oxidoreductase activity | 4.00E-03 |
| 41 | GO:0031409: pigment binding | 4.58E-03 |
| 42 | GO:0005528: FK506 binding | 4.92E-03 |
| 43 | GO:0050662: coenzyme binding | 8.32E-03 |
| 44 | GO:0042802: identical protein binding | 8.51E-03 |
| 45 | GO:0004872: receptor activity | 8.74E-03 |
| 46 | GO:0016168: chlorophyll binding | 1.23E-02 |
| 47 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.38E-02 |
| 48 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.75E-02 |
| 49 | GO:0016491: oxidoreductase activity | 2.39E-02 |
| 50 | GO:0031625: ubiquitin protein ligase binding | 2.70E-02 |
| 51 | GO:0051082: unfolded protein binding | 3.22E-02 |
| 52 | GO:0003735: structural constituent of ribosome | 3.98E-02 |
| 53 | GO:0030170: pyridoxal phosphate binding | 4.07E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.05E-26 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.08E-20 |
| 5 | GO:0009941: chloroplast envelope | 1.58E-17 |
| 6 | GO:0009534: chloroplast thylakoid | 2.47E-15 |
| 7 | GO:0009579: thylakoid | 1.80E-12 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.99E-11 |
| 9 | GO:0031977: thylakoid lumen | 7.11E-11 |
| 10 | GO:0009570: chloroplast stroma | 1.57E-10 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 9.53E-08 |
| 12 | GO:0010287: plastoglobule | 5.05E-05 |
| 13 | GO:0009515: granal stacked thylakoid | 9.14E-05 |
| 14 | GO:0005787: signal peptidase complex | 9.14E-05 |
| 15 | GO:0048046: apoplast | 1.63E-04 |
| 16 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.16E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 3.15E-04 |
| 18 | GO:0009317: acetyl-CoA carboxylase complex | 3.61E-04 |
| 19 | GO:0019898: extrinsic component of membrane | 6.49E-04 |
| 20 | GO:0010319: stromule | 8.83E-04 |
| 21 | GO:0009501: amyloplast | 1.72E-03 |
| 22 | GO:0008180: COP9 signalosome | 2.21E-03 |
| 23 | GO:0009706: chloroplast inner membrane | 3.89E-03 |
| 24 | GO:0005840: ribosome | 4.18E-03 |
| 25 | GO:0030076: light-harvesting complex | 4.26E-03 |
| 26 | GO:0042651: thylakoid membrane | 5.27E-03 |
| 27 | GO:0009522: photosystem I | 8.32E-03 |
| 28 | GO:0009523: photosystem II | 8.74E-03 |
| 29 | GO:0031969: chloroplast membrane | 1.29E-02 |
| 30 | GO:0019005: SCF ubiquitin ligase complex | 1.43E-02 |
| 31 | GO:0000502: proteasome complex | 2.51E-02 |
| 32 | GO:0005623: cell | 3.85E-02 |
| 33 | GO:0005777: peroxisome | 3.88E-02 |