co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0009821: alkaloid biosynthetic process	2.58E-05
6	GO:0000012: single strand break repair	4.45E-05
7	GO:0015798: myo-inositol transport	4.45E-05
8	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	4.45E-05
9	GO:0043087: regulation of GTPase activity	4.45E-05
10	GO:1902458: positive regulation of stomatal opening	4.45E-05
11	GO:0048508: embryonic meristem development	4.45E-05
12	GO:0015969: guanosine tetraphosphate metabolic process	4.45E-05
13	GO:0090351: seedling development	8.24E-05
14	GO:0000256: allantoin catabolic process	1.10E-04
15	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.10E-04
16	GO:0046741: transport of virus in host, tissue to tissue	1.10E-04
17	GO:0009945: radial axis specification	1.10E-04
18	GO:0006435: threonyl-tRNA aminoacylation	1.10E-04
19	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.88E-04
20	GO:0017006: protein-tetrapyrrole linkage	1.89E-04
21	GO:0000913: preprophase band assembly	1.89E-04
22	GO:0031022: nuclear migration along microfilament	1.89E-04
23	GO:0010136: ureide catabolic process	1.89E-04
24	GO:0007018: microtubule-based movement	2.39E-04
25	GO:0007059: chromosome segregation	2.39E-04
26	GO:0043572: plastid fission	2.78E-04
27	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.78E-04
28	GO:0009584: detection of visible light	2.78E-04
29	GO:0006145: purine nucleobase catabolic process	2.78E-04
30	GO:0016032: viral process	2.95E-04
31	GO:0071483: cellular response to blue light	3.73E-04
32	GO:0051322: anaphase	3.73E-04
33	GO:0000910: cytokinesis	3.77E-04
34	GO:0009904: chloroplast accumulation movement	4.75E-04
35	GO:0045038: protein import into chloroplast thylakoid membrane	4.75E-04
36	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.82E-04
37	GO:0009903: chloroplast avoidance movement	6.94E-04
38	GO:0017148: negative regulation of translation	6.94E-04
39	GO:0009942: longitudinal axis specification	6.94E-04
40	GO:0009793: embryo development ending in seed dormancy	6.95E-04
41	GO:0010161: red light signaling pathway	8.11E-04
42	GO:2000070: regulation of response to water deprivation	9.32E-04
43	GO:0045010: actin nucleation	9.32E-04
44	GO:0009808: lignin metabolic process	1.06E-03
45	GO:0071482: cellular response to light stimulus	1.06E-03
46	GO:0000373: Group II intron splicing	1.19E-03
47	GO:0046685: response to arsenic-containing substance	1.19E-03
48	GO:0009638: phototropism	1.32E-03
49	GO:0006259: DNA metabolic process	1.47E-03
50	GO:0006352: DNA-templated transcription, initiation	1.61E-03
51	GO:0006265: DNA topological change	1.61E-03
52	GO:0045037: protein import into chloroplast stroma	1.77E-03
53	GO:0010152: pollen maturation	1.77E-03
54	GO:0009767: photosynthetic electron transport chain	1.92E-03
55	GO:0009058: biosynthetic process	2.02E-03
56	GO:0006302: double-strand break repair	2.09E-03
57	GO:0010020: chloroplast fission	2.09E-03
58	GO:0010207: photosystem II assembly	2.09E-03
59	GO:0006833: water transport	2.42E-03
60	GO:0010073: meristem maintenance	2.77E-03
61	GO:0006825: copper ion transport	2.77E-03
62	GO:0051302: regulation of cell division	2.77E-03
63	GO:0009737: response to abscisic acid	2.87E-03
64	GO:0051260: protein homooligomerization	2.96E-03
65	GO:0031348: negative regulation of defense response	3.14E-03
66	GO:0006730: one-carbon metabolic process	3.14E-03
67	GO:0009306: protein secretion	3.53E-03
68	GO:0034220: ion transmembrane transport	3.93E-03
69	GO:0048653: anther development	3.93E-03
70	GO:0009658: chloroplast organization	4.04E-03
71	GO:0010197: polar nucleus fusion	4.14E-03
72	GO:0000302: response to reactive oxygen species	4.77E-03
73	GO:0009630: gravitropism	4.99E-03
74	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.18E-03
75	GO:0010090: trichome morphogenesis	5.22E-03
76	GO:0010029: regulation of seed germination	6.39E-03
77	GO:0016311: dephosphorylation	7.14E-03
78	GO:0018298: protein-chromophore linkage	7.39E-03
79	GO:0010218: response to far red light	7.91E-03
80	GO:0009853: photorespiration	8.71E-03
81	GO:0045087: innate immune response	8.71E-03
82	GO:0009640: photomorphogenesis	1.04E-02
83	GO:0009846: pollen germination	1.22E-02
84	GO:0009738: abscisic acid-activated signaling pathway	1.27E-02
85	GO:0009585: red, far-red light phototransduction	1.28E-02
86	GO:0055085: transmembrane transport	1.67E-02
87	GO:0006468: protein phosphorylation	2.01E-02
88	GO:0006508: proteolysis	2.10E-02
89	GO:0009790: embryo development	2.16E-02
90	GO:0006413: translational initiation	2.31E-02
91	GO:0009414: response to water deprivation	2.60E-02
92	GO:0009739: response to gibberellin	2.63E-02
93	GO:0007166: cell surface receptor signaling pathway	2.68E-02
94	GO:0042254: ribosome biogenesis	3.36E-02
95	GO:0006970: response to osmotic stress	3.50E-02
96	GO:0007049: cell cycle	3.59E-02
97	GO:0009409: response to cold	3.60E-02
98	GO:0080167: response to karrikin	3.87E-02
99	GO:0006810: transport	3.90E-02
100	GO:0046777: protein autophosphorylation	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
5	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
6	GO:0016844: strictosidine synthase activity	3.18E-05
7	GO:0031516: far-red light photoreceptor activity	4.45E-05
8	GO:0004008: copper-exporting ATPase activity	4.45E-05
9	GO:0008728: GTP diphosphokinase activity	1.10E-04
10	GO:0005366: myo-inositol:proton symporter activity	1.10E-04
11	GO:0009883: red or far-red light photoreceptor activity	1.10E-04
12	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.10E-04
13	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.10E-04
14	GO:0004829: threonine-tRNA ligase activity	1.10E-04
15	GO:0008020: G-protein coupled photoreceptor activity	1.89E-04
16	GO:0008430: selenium binding	1.89E-04
17	GO:0004180: carboxypeptidase activity	1.89E-04
18	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.89E-04
19	GO:0048038: quinone binding	2.76E-04
20	GO:0008017: microtubule binding	2.89E-04
21	GO:0001053: plastid sigma factor activity	3.73E-04
22	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.73E-04
23	GO:0016987: sigma factor activity	3.73E-04
24	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	3.73E-04
25	GO:0008374: O-acyltransferase activity	4.75E-04
26	GO:0009927: histidine phosphotransfer kinase activity	6.94E-04
27	GO:0043022: ribosome binding	9.32E-04
28	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.06E-03
29	GO:0005375: copper ion transmembrane transporter activity	1.06E-03
30	GO:0003777: microtubule motor activity	1.21E-03
31	GO:0004673: protein histidine kinase activity	1.47E-03
32	GO:0005515: protein binding	1.71E-03
33	GO:0000155: phosphorelay sensor kinase activity	1.92E-03
34	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.92E-03
35	GO:0004190: aspartic-type endopeptidase activity	2.25E-03
36	GO:0015144: carbohydrate transmembrane transporter activity	2.29E-03
37	GO:0005351: sugar:proton symporter activity	2.57E-03
38	GO:0004527: exonuclease activity	4.14E-03
39	GO:0015250: water channel activity	6.15E-03
40	GO:0042803: protein homodimerization activity	6.27E-03
41	GO:0008236: serine-type peptidase activity	7.14E-03
42	GO:0005096: GTPase activator activity	7.65E-03
43	GO:0004672: protein kinase activity	8.23E-03
44	GO:0003697: single-stranded DNA binding	8.71E-03
45	GO:0035091: phosphatidylinositol binding	1.10E-02
46	GO:0016887: ATPase activity	1.14E-02
47	GO:0005524: ATP binding	1.19E-02
48	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.28E-02
49	GO:0003690: double-stranded DNA binding	1.32E-02
50	GO:0016787: hydrolase activity	1.33E-02
51	GO:0016829: lyase activity	2.05E-02
52	GO:0005525: GTP binding	2.16E-02
53	GO:0016301: kinase activity	2.18E-02
54	GO:0008565: protein transporter activity	2.20E-02
55	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.31E-02
56	GO:0003743: translation initiation factor activity	2.72E-02
57	GO:0042802: identical protein binding	2.88E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	3.36E-02
59	GO:0004674: protein serine/threonine kinase activity	3.77E-02
60	GO:0008233: peptidase activity	3.82E-02
61	GO:0003729: mRNA binding	3.95E-02
62	GO:0052689: carboxylic ester hydrolase activity	4.15E-02
63	GO:0004871: signal transducer activity	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.00E-06
2	GO:0009574: preprophase band	6.27E-05
3	GO:0009535: chloroplast thylakoid membrane	1.16E-04
4	GO:0005871: kinesin complex	1.88E-04
5	GO:0033281: TAT protein transport complex	1.89E-04
6	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	3.73E-04
7	GO:0030660: Golgi-associated vesicle membrane	3.73E-04
8	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	3.73E-04
9	GO:0031209: SCAR complex	5.82E-04
10	GO:0005874: microtubule	6.02E-04
11	GO:0005773: vacuole	7.38E-04
12	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	9.32E-04
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.19E-03
14	GO:0009536: plastid	1.24E-03
15	GO:0016604: nuclear body	1.32E-03
16	GO:0005765: lysosomal membrane	1.61E-03
17	GO:0005623: cell	1.97E-03
18	GO:0009524: phragmoplast	2.02E-03
19	GO:0009504: cell plate	4.56E-03
20	GO:0005694: chromosome	4.99E-03
21	GO:0009295: nucleoid	5.68E-03
22	GO:0030529: intracellular ribonucleoprotein complex	6.15E-03
23	GO:0019005: SCF ubiquitin ligase complex	7.39E-03
24	GO:0009707: chloroplast outer membrane	7.39E-03
25	GO:0005819: spindle	9.27E-03
26	GO:0005887: integral component of plasma membrane	1.00E-02
27	GO:0005856: cytoskeleton	1.13E-02
28	GO:0005886: plasma membrane	1.32E-02
29	GO:0016607: nuclear speck	1.48E-02
30	GO:0010008: endosome membrane	1.48E-02
31	GO:0009706: chloroplast inner membrane	1.65E-02
32	GO:0005759: mitochondrial matrix	2.27E-02
33	GO:0005622: intracellular	2.34E-02
34	GO:0009705: plant-type vacuole membrane	2.43E-02
35	GO:0046658: anchored component of plasma membrane	2.97E-02
36	GO:0009941: chloroplast envelope	3.56E-02