Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G09650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:1902326: positive regulation of chlorophyll biosynthetic process0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0090279: regulation of calcium ion import0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
10GO:0008298: intracellular mRNA localization0.00E+00
11GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
12GO:0071474: cellular hyperosmotic response0.00E+00
13GO:0015979: photosynthesis1.61E-06
14GO:1901259: chloroplast rRNA processing2.10E-06
15GO:0032544: plastid translation7.49E-06
16GO:0009765: photosynthesis, light harvesting4.39E-05
17GO:0010207: photosystem II assembly4.53E-05
18GO:0015995: chlorophyll biosynthetic process4.94E-05
19GO:0034337: RNA folding2.53E-04
20GO:0000476: maturation of 4.5S rRNA2.53E-04
21GO:0000967: rRNA 5'-end processing2.53E-04
22GO:0015671: oxygen transport2.53E-04
23GO:0042371: vitamin K biosynthetic process2.53E-04
24GO:0043686: co-translational protein modification2.53E-04
25GO:0009657: plastid organization2.90E-04
26GO:0051262: protein tetramerization5.59E-04
27GO:0034470: ncRNA processing5.59E-04
28GO:0010541: acropetal auxin transport5.59E-04
29GO:0018026: peptidyl-lysine monomethylation5.59E-04
30GO:1904143: positive regulation of carotenoid biosynthetic process5.59E-04
31GO:0009773: photosynthetic electron transport in photosystem I5.62E-04
32GO:0019684: photosynthesis, light reaction5.62E-04
33GO:0018298: protein-chromophore linkage6.42E-04
34GO:0009767: photosynthetic electron transport chain7.28E-04
35GO:0005977: glycogen metabolic process9.07E-04
36GO:0048281: inflorescence morphogenesis9.07E-04
37GO:0006954: inflammatory response9.07E-04
38GO:0010160: formation of animal organ boundary9.07E-04
39GO:0090391: granum assembly9.07E-04
40GO:0015940: pantothenate biosynthetic process9.07E-04
41GO:0010114: response to red light1.18E-03
42GO:0006418: tRNA aminoacylation for protein translation1.23E-03
43GO:0007017: microtubule-based process1.23E-03
44GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.29E-03
45GO:0071484: cellular response to light intensity1.29E-03
46GO:0009152: purine ribonucleotide biosynthetic process1.29E-03
47GO:0046653: tetrahydrofolate metabolic process1.29E-03
48GO:0043481: anthocyanin accumulation in tissues in response to UV light1.29E-03
49GO:0009052: pentose-phosphate shunt, non-oxidative branch1.29E-03
50GO:0010148: transpiration1.29E-03
51GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.29E-03
52GO:0015976: carbon utilization1.73E-03
53GO:0019464: glycine decarboxylation via glycine cleavage system1.73E-03
54GO:2000122: negative regulation of stomatal complex development1.73E-03
55GO:0006546: glycine catabolic process1.73E-03
56GO:0010021: amylopectin biosynthetic process1.73E-03
57GO:0010037: response to carbon dioxide1.73E-03
58GO:0055114: oxidation-reduction process1.97E-03
59GO:0006810: transport2.14E-03
60GO:0006465: signal peptide processing2.21E-03
61GO:0009958: positive gravitropism2.21E-03
62GO:0032543: mitochondrial translation2.21E-03
63GO:0006564: L-serine biosynthetic process2.21E-03
64GO:0031365: N-terminal protein amino acid modification2.21E-03
65GO:0042549: photosystem II stabilization2.72E-03
66GO:0060918: auxin transport2.72E-03
67GO:0010190: cytochrome b6f complex assembly2.72E-03
68GO:0000741: karyogamy2.72E-03
69GO:0050665: hydrogen peroxide biosynthetic process2.72E-03
70GO:0032502: developmental process2.90E-03
71GO:0009955: adaxial/abaxial pattern specification3.27E-03
72GO:0048280: vesicle fusion with Golgi apparatus3.27E-03
73GO:0009854: oxidative photosynthetic carbon pathway3.27E-03
74GO:0010019: chloroplast-nucleus signaling pathway3.27E-03
75GO:0070370: cellular heat acclimation3.86E-03
76GO:0009769: photosynthesis, light harvesting in photosystem II3.86E-03
77GO:0009645: response to low light intensity stimulus3.86E-03
78GO:0010103: stomatal complex morphogenesis3.86E-03
79GO:0007155: cell adhesion4.48E-03
80GO:0010078: maintenance of root meristem identity4.48E-03
81GO:0055085: transmembrane transport4.66E-03
82GO:0043562: cellular response to nitrogen levels5.13E-03
83GO:0017004: cytochrome complex assembly5.13E-03
84GO:0001558: regulation of cell growth5.13E-03
85GO:0010204: defense response signaling pathway, resistance gene-independent5.13E-03
86GO:0010218: response to far red light5.63E-03
87GO:0019432: triglyceride biosynthetic process5.81E-03
88GO:0010206: photosystem II repair5.81E-03
89GO:0046916: cellular transition metal ion homeostasis5.81E-03
90GO:0048527: lateral root development5.91E-03
91GO:0009637: response to blue light6.48E-03
92GO:0009853: photorespiration6.48E-03
93GO:0005975: carbohydrate metabolic process7.18E-03
94GO:0045036: protein targeting to chloroplast7.26E-03
95GO:0006949: syncytium formation7.26E-03
96GO:0006896: Golgi to vacuole transport7.26E-03
97GO:0009684: indoleacetic acid biosynthetic process8.04E-03
98GO:0009089: lysine biosynthetic process via diaminopimelate8.04E-03
99GO:0043085: positive regulation of catalytic activity8.04E-03
100GO:0006415: translational termination8.04E-03
101GO:0008361: regulation of cell size8.83E-03
102GO:0016024: CDP-diacylglycerol biosynthetic process8.83E-03
103GO:0010588: cotyledon vascular tissue pattern formation9.66E-03
104GO:0009735: response to cytokinin1.01E-02
105GO:0009664: plant-type cell wall organization1.05E-02
106GO:0010540: basipetal auxin transport1.05E-02
107GO:0048467: gynoecium development1.05E-02
108GO:0010143: cutin biosynthetic process1.05E-02
109GO:0009416: response to light stimulus1.16E-02
110GO:0051603: proteolysis involved in cellular protein catabolic process1.17E-02
111GO:0080167: response to karrikin1.24E-02
112GO:0009944: polarity specification of adaxial/abaxial axis1.32E-02
113GO:0048367: shoot system development1.38E-02
114GO:0051302: regulation of cell division1.42E-02
115GO:0009768: photosynthesis, light harvesting in photosystem I1.42E-02
116GO:0019915: lipid storage1.52E-02
117GO:0061077: chaperone-mediated protein folding1.52E-02
118GO:0009269: response to desiccation1.52E-02
119GO:0019748: secondary metabolic process1.62E-02
120GO:0030245: cellulose catabolic process1.62E-02
121GO:0016226: iron-sulfur cluster assembly1.62E-02
122GO:0009742: brassinosteroid mediated signaling pathway1.71E-02
123GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.72E-02
124GO:0009686: gibberellin biosynthetic process1.72E-02
125GO:0001944: vasculature development1.72E-02
126GO:0048443: stamen development1.83E-02
127GO:0009306: protein secretion1.83E-02
128GO:0032259: methylation1.92E-02
129GO:0016117: carotenoid biosynthetic process1.94E-02
130GO:0042147: retrograde transport, endosome to Golgi1.94E-02
131GO:0010118: stomatal movement2.05E-02
132GO:0080022: primary root development2.05E-02
133GO:0010087: phloem or xylem histogenesis2.05E-02
134GO:0009741: response to brassinosteroid2.16E-02
135GO:0010268: brassinosteroid homeostasis2.16E-02
136GO:0006520: cellular amino acid metabolic process2.16E-02
137GO:0006662: glycerol ether metabolic process2.16E-02
138GO:0010197: polar nucleus fusion2.16E-02
139GO:0009646: response to absence of light2.27E-02
140GO:0009851: auxin biosynthetic process2.39E-02
141GO:0006623: protein targeting to vacuole2.39E-02
142GO:0048825: cotyledon development2.39E-02
143GO:0019252: starch biosynthetic process2.39E-02
144GO:0016132: brassinosteroid biosynthetic process2.51E-02
145GO:0071554: cell wall organization or biogenesis2.51E-02
146GO:0006891: intra-Golgi vesicle-mediated transport2.51E-02
147GO:0006413: translational initiation2.60E-02
148GO:1901657: glycosyl compound metabolic process2.75E-02
149GO:0016125: sterol metabolic process2.87E-02
150GO:0009639: response to red or far red light2.87E-02
151GO:0009828: plant-type cell wall loosening2.87E-02
152GO:0009739: response to gibberellin3.12E-02
153GO:0006412: translation3.16E-02
154GO:0010027: thylakoid membrane organization3.26E-02
155GO:0042128: nitrate assimilation3.52E-02
156GO:0006888: ER to Golgi vesicle-mediated transport3.66E-02
157GO:0016311: dephosphorylation3.80E-02
158GO:0009817: defense response to fungus, incompatible interaction3.93E-02
159GO:0048481: plant ovule development3.93E-02
160GO:0009813: flavonoid biosynthetic process4.08E-02
161GO:0009658: chloroplast organization4.30E-02
162GO:0010119: regulation of stomatal movement4.36E-02
163GO:0042254: ribosome biogenesis4.38E-02
164GO:0034599: cellular response to oxidative stress4.80E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
5GO:0004823: leucine-tRNA ligase activity0.00E+00
6GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
7GO:0019899: enzyme binding3.39E-06
8GO:0019843: rRNA binding7.21E-06
9GO:0002161: aminoacyl-tRNA editing activity1.07E-05
10GO:0016851: magnesium chelatase activity2.42E-05
11GO:0043495: protein anchor4.39E-05
12GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.41E-04
13GO:0005344: oxygen transporter activity2.53E-04
14GO:0046906: tetrapyrrole binding2.53E-04
15GO:0005227: calcium activated cation channel activity2.53E-04
16GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity2.53E-04
17GO:0051777: ent-kaurenoate oxidase activity2.53E-04
18GO:0004856: xylulokinase activity2.53E-04
19GO:0042586: peptide deformylase activity2.53E-04
20GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.53E-04
21GO:0016168: chlorophyll binding4.92E-04
22GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.59E-04
23GO:0004617: phosphoglycerate dehydrogenase activity5.59E-04
24GO:0004047: aminomethyltransferase activity5.59E-04
25GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.59E-04
26GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.59E-04
27GO:0016630: protochlorophyllide reductase activity5.59E-04
28GO:0019156: isoamylase activity5.59E-04
29GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.59E-04
30GO:0008864: formyltetrahydrofolate deformylase activity9.07E-04
31GO:0004751: ribose-5-phosphate isomerase activity9.07E-04
32GO:0016742: hydroxymethyl-, formyl- and related transferase activity9.07E-04
33GO:0005528: FK506 binding1.12E-03
34GO:0004185: serine-type carboxypeptidase activity1.18E-03
35GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.29E-03
36GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.29E-03
37GO:0004375: glycine dehydrogenase (decarboxylating) activity1.29E-03
38GO:0016149: translation release factor activity, codon specific1.29E-03
39GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.29E-03
40GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.43E-03
41GO:0022891: substrate-specific transmembrane transporter activity1.61E-03
42GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.73E-03
43GO:0004045: aminoacyl-tRNA hydrolase activity1.73E-03
44GO:0045430: chalcone isomerase activity1.73E-03
45GO:0019199: transmembrane receptor protein kinase activity1.73E-03
46GO:0042277: peptide binding1.73E-03
47GO:0008891: glycolate oxidase activity1.73E-03
48GO:0016279: protein-lysine N-methyltransferase activity1.73E-03
49GO:0004812: aminoacyl-tRNA ligase activity1.90E-03
50GO:0016846: carbon-sulfur lyase activity2.21E-03
51GO:0003959: NADPH dehydrogenase activity2.21E-03
52GO:0016773: phosphotransferase activity, alcohol group as acceptor2.21E-03
53GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.72E-03
54GO:0004556: alpha-amylase activity2.72E-03
55GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.72E-03
56GO:0005261: cation channel activity3.27E-03
57GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.27E-03
58GO:0005200: structural constituent of cytoskeleton3.49E-03
59GO:0046914: transition metal ion binding5.13E-03
60GO:0009055: electron carrier activity5.41E-03
61GO:0016491: oxidoreductase activity5.44E-03
62GO:0003747: translation release factor activity5.81E-03
63GO:0042802: identical protein binding7.32E-03
64GO:0008559: xenobiotic-transporting ATPase activity8.04E-03
65GO:0008378: galactosyltransferase activity8.83E-03
66GO:0000049: tRNA binding8.83E-03
67GO:0008168: methyltransferase activity8.97E-03
68GO:0051537: 2 iron, 2 sulfur cluster binding9.04E-03
69GO:0004089: carbonate dehydratase activity9.66E-03
70GO:0003725: double-stranded RNA binding9.66E-03
71GO:0004565: beta-galactosidase activity9.66E-03
72GO:0010329: auxin efflux transmembrane transporter activity9.66E-03
73GO:0004022: alcohol dehydrogenase (NAD) activity9.66E-03
74GO:0008266: poly(U) RNA binding1.05E-02
75GO:0031409: pigment binding1.23E-02
76GO:0051536: iron-sulfur cluster binding1.32E-02
77GO:0008810: cellulase activity1.72E-02
78GO:0003727: single-stranded RNA binding1.83E-02
79GO:0047134: protein-disulfide reductase activity1.94E-02
80GO:0003924: GTPase activity2.03E-02
81GO:0004791: thioredoxin-disulfide reductase activity2.27E-02
82GO:0010181: FMN binding2.27E-02
83GO:0020037: heme binding2.30E-02
84GO:0008565: protein transporter activity2.42E-02
85GO:0005525: GTP binding2.45E-02
86GO:0048038: quinone binding2.51E-02
87GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.75E-02
88GO:0016791: phosphatase activity2.87E-02
89GO:0008483: transaminase activity3.00E-02
90GO:0016722: oxidoreductase activity, oxidizing metal ions3.00E-02
91GO:0016413: O-acetyltransferase activity3.13E-02
92GO:0016597: amino acid binding3.13E-02
93GO:0003743: translation initiation factor activity3.26E-02
94GO:0003735: structural constituent of ribosome3.38E-02
95GO:0016887: ATPase activity3.50E-02
96GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.54E-02
97GO:0102483: scopolin beta-glucosidase activity3.66E-02
98GO:0003824: catalytic activity3.80E-02
99GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.93E-02
100GO:0004601: peroxidase activity4.30E-02
101GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.36E-02
102GO:0003993: acid phosphatase activity4.80E-02
103GO:0008422: beta-glucosidase activity4.95E-02
104GO:0000149: SNARE binding4.95E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009507: chloroplast1.82E-30
4GO:0009535: chloroplast thylakoid membrane4.39E-21
5GO:0009570: chloroplast stroma1.96E-17
6GO:0009579: thylakoid6.04E-10
7GO:0009534: chloroplast thylakoid6.42E-10
8GO:0009543: chloroplast thylakoid lumen8.39E-10
9GO:0009941: chloroplast envelope1.14E-08
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.04E-05
11GO:0010007: magnesium chelatase complex1.07E-05
12GO:0009523: photosystem II1.46E-05
13GO:0030095: chloroplast photosystem II4.53E-05
14GO:0009654: photosystem II oxygen evolving complex8.85E-05
15GO:0031977: thylakoid lumen1.28E-04
16GO:0009547: plastid ribosome2.53E-04
17GO:0005787: signal peptidase complex2.53E-04
18GO:0005840: ribosome2.84E-04
19GO:0031969: chloroplast membrane5.67E-04
20GO:0033281: TAT protein transport complex9.07E-04
21GO:0042651: thylakoid membrane1.23E-03
22GO:0015630: microtubule cytoskeleton1.29E-03
23GO:0005960: glycine cleavage complex1.29E-03
24GO:0009517: PSII associated light-harvesting complex II1.73E-03
25GO:0009522: photosystem I2.37E-03
26GO:0019898: extrinsic component of membrane2.54E-03
27GO:0012507: ER to Golgi transport vesicle membrane4.48E-03
28GO:0009539: photosystem II reaction center5.13E-03
29GO:0005763: mitochondrial small ribosomal subunit5.81E-03
30GO:0045298: tubulin complex5.81E-03
31GO:0000311: plastid large ribosomal subunit8.83E-03
32GO:0032040: small-subunit processome8.83E-03
33GO:0009508: plastid chromosome9.66E-03
34GO:0030076: light-harvesting complex1.14E-02
35GO:0005618: cell wall1.80E-02
36GO:0009295: nucleoid3.00E-02
37GO:0030529: intracellular ribonucleoprotein complex3.26E-02
38GO:0046658: anchored component of plasma membrane3.69E-02
39GO:0048046: apoplast3.77E-02
40GO:0009707: chloroplast outer membrane3.93E-02
41GO:0000325: plant-type vacuole4.36E-02
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Gene type



Gene DE type