co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051180: vitamin transport	3.12E-05
2	GO:0030974: thiamine pyrophosphate transport	3.12E-05
3	GO:0045857: negative regulation of molecular function, epigenetic	3.12E-05
4	GO:0009863: salicylic acid mediated signaling pathway	6.31E-05
5	GO:0043066: negative regulation of apoptotic process	7.88E-05
6	GO:0080185: effector dependent induction by symbiont of host immune response	7.88E-05
7	GO:0015893: drug transport	7.88E-05
8	GO:0045732: positive regulation of protein catabolic process	7.88E-05
9	GO:0061158: 3'-UTR-mediated mRNA destabilization	1.37E-04
10	GO:0043967: histone H4 acetylation	2.04E-04
11	GO:1902358: sulfate transmembrane transport	2.04E-04
12	GO:0030100: regulation of endocytosis	2.04E-04
13	GO:0006865: amino acid transport	4.02E-04
14	GO:0048827: phyllome development	4.34E-04
15	GO:0010016: shoot system morphogenesis	5.20E-04
16	GO:0009648: photoperiodism	5.20E-04
17	GO:0045814: negative regulation of gene expression, epigenetic	5.20E-04
18	GO:0045010: actin nucleation	6.99E-04
19	GO:0030162: regulation of proteolysis	6.99E-04
20	GO:0006491: N-glycan processing	6.99E-04
21	GO:1900150: regulation of defense response to fungus	6.99E-04
22	GO:0048766: root hair initiation	6.99E-04
23	GO:0006486: protein glycosylation	7.16E-04
24	GO:0009932: cell tip growth	7.94E-04
25	GO:0009056: catabolic process	8.92E-04
26	GO:0008202: steroid metabolic process	9.92E-04
27	GO:0010048: vernalization response	1.10E-03
28	GO:0006325: chromatin organization	1.10E-03
29	GO:0016925: protein sumoylation	1.31E-03
30	GO:0009825: multidimensional cell growth	1.67E-03
31	GO:0006487: protein N-linked glycosylation	1.92E-03
32	GO:0006338: chromatin remodeling	1.92E-03
33	GO:0003333: amino acid transmembrane transport	2.19E-03
34	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.32E-03
35	GO:0006284: base-excision repair	2.61E-03
36	GO:0009958: positive gravitropism	3.05E-03
37	GO:0006342: chromatin silencing	3.05E-03
38	GO:0080167: response to karrikin	3.20E-03
39	GO:0048825: cotyledon development	3.36E-03
40	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.51E-03
41	GO:0051607: defense response to virus	4.34E-03
42	GO:0009751: response to salicylic acid	4.64E-03
43	GO:0009816: defense response to bacterium, incompatible interaction	4.69E-03
44	GO:0009627: systemic acquired resistance	4.87E-03
45	GO:0048573: photoperiodism, flowering	5.05E-03
46	GO:0009817: defense response to fungus, incompatible interaction	5.42E-03
47	GO:0048767: root hair elongation	5.60E-03
48	GO:0006499: N-terminal protein myristoylation	5.79E-03
49	GO:0009910: negative regulation of flower development	5.99E-03
50	GO:0006839: mitochondrial transport	6.98E-03
51	GO:0007165: signal transduction	7.18E-03
52	GO:0006897: endocytosis	7.19E-03
53	GO:0009926: auxin polar transport	7.60E-03
54	GO:0008643: carbohydrate transport	8.03E-03
55	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	8.68E-03
56	GO:0035556: intracellular signal transduction	8.79E-03
57	GO:0009585: red, far-red light phototransduction	9.36E-03
58	GO:0010224: response to UV-B	9.59E-03
59	GO:0009620: response to fungus	1.13E-02
60	GO:0016569: covalent chromatin modification	1.15E-02
61	GO:0018105: peptidyl-serine phosphorylation	1.22E-02
62	GO:0042742: defense response to bacterium	1.69E-02
63	GO:0030154: cell differentiation	1.84E-02
64	GO:0009733: response to auxin	1.90E-02
65	GO:0009739: response to gibberellin	1.91E-02
66	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.91E-02
67	GO:0009617: response to bacterium	2.00E-02
68	GO:0006952: defense response	2.48E-02
69	GO:0006810: transport	2.49E-02
70	GO:0007049: cell cycle	2.61E-02
71	GO:0009723: response to ethylene	2.67E-02
72	GO:0046777: protein autophosphorylation	2.95E-02
73	GO:0044550: secondary metabolite biosynthetic process	2.98E-02
74	GO:0006869: lipid transport	3.41E-02
75	GO:0009408: response to heat	3.71E-02
76	GO:0006468: protein phosphorylation	3.75E-02
77	GO:0048364: root development	3.82E-02
78	GO:0009753: response to jasmonic acid	3.90E-02
79	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.53E-02
80	GO:0009734: auxin-activated signaling pathway	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
2	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
3	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
4	GO:0005522: profilin binding	0.00E+00
5	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
6	GO:1901149: salicylic acid binding	3.12E-05
7	GO:0090422: thiamine pyrophosphate transporter activity	3.12E-05
8	GO:1990188: euchromatin binding	3.12E-05
9	GO:0019948: SUMO activating enzyme activity	1.37E-04
10	GO:0003935: GTP cyclohydrolase II activity	1.37E-04
11	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	2.04E-04
12	GO:0008725: DNA-3-methyladenine glycosylase activity	3.53E-04
13	GO:0003730: mRNA 3'-UTR binding	5.20E-04
14	GO:0004559: alpha-mannosidase activity	5.20E-04
15	GO:0035064: methylated histone binding	6.99E-04
16	GO:0015171: amino acid transmembrane transporter activity	7.90E-04
17	GO:0008142: oxysterol binding	7.94E-04
18	GO:0008271: secondary active sulfate transmembrane transporter activity	7.94E-04
19	GO:0015116: sulfate transmembrane transporter activity	1.31E-03
20	GO:0008378: galactosyltransferase activity	1.31E-03
21	GO:0031072: heat shock protein binding	1.43E-03
22	GO:0005509: calcium ion binding	2.56E-03
23	GO:0008514: organic anion transmembrane transporter activity	2.61E-03
24	GO:0005515: protein binding	2.75E-03
25	GO:0005102: receptor binding	2.75E-03
26	GO:0043531: ADP binding	2.84E-03
27	GO:0051015: actin filament binding	3.84E-03
28	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.87E-03
29	GO:0004683: calmodulin-dependent protein kinase activity	5.05E-03
30	GO:0016787: hydrolase activity	7.44E-03
31	GO:0015293: symporter activity	8.24E-03
32	GO:0031625: ubiquitin protein ligase binding	1.01E-02
33	GO:0003779: actin binding	1.17E-02
34	GO:0051082: unfolded protein binding	1.20E-02
35	GO:0005525: GTP binding	1.37E-02
36	GO:0016758: transferase activity, transferring hexosyl groups	1.38E-02
37	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.54E-02
38	GO:0044212: transcription regulatory region DNA binding	1.69E-02
39	GO:0004842: ubiquitin-protein transferase activity	2.34E-02
40	GO:0005524: ATP binding	2.47E-02
41	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.19E-02
42	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.37E-02
43	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.45E-02
44	GO:0003924: GTPase activity	3.71E-02
45	GO:0008289: lipid binding	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0000791: euchromatin	3.12E-05
2	GO:0005911: cell-cell junction	3.12E-05
3	GO:0009986: cell surface	6.07E-04
4	GO:0000123: histone acetyltransferase complex	6.07E-04
5	GO:0005720: nuclear heterochromatin	8.92E-04
6	GO:0090404: pollen tube tip	1.20E-03
7	GO:0019005: SCF ubiquitin ligase complex	5.42E-03
8	GO:0005856: cytoskeleton	8.24E-03
9	GO:0005794: Golgi apparatus	1.10E-02
10	GO:0005829: cytosol	1.19E-02
11	GO:0005654: nucleoplasm	1.38E-02
12	GO:0005886: plasma membrane	1.45E-02
13	GO:0009524: phragmoplast	1.46E-02
14	GO:0005768: endosome	1.52E-02
15	GO:0005615: extracellular space	1.91E-02
16	GO:0005634: nucleus	2.29E-02
17	GO:0000139: Golgi membrane	2.29E-02
18	GO:0005743: mitochondrial inner membrane	3.52E-02
19	GO:0005887: integral component of plasma membrane	4.61E-02